##maf version=1 scoring=multiz a score=88436.000000 s hg15.chr22 14435061 686 + 49476972 TCAGTGGAGCTGGCAATCTGACGATGCCTCTCTTTGGACCCTGGCCTTCAGCCTCTTCAGGCCATGGTGATCGGGGTCCACCAGGAGAAAGATCTCGGCTGTCATCCAAGCCTCTGTGTAGCACTGCTCCTCCAGGCAGCATTGTCCATGACACAGAAACACCTGTACTGTTGGGGCCCGGC------------ACAGGCTATTCTCGGCCAAAGTGAGCCCCAGCTTAAGGGCCTGGGCAAAGGCCTCTTTGCCCTCA-CCTTGTCCTTCAGGCTCAGCAGCAGGCAACCCCAATTGCAGAAGTC-TCTATCCATCTTGGGAGGTTGTCATCCCCTGAACCTTCCTAGAGCACATTGTCCAGGCCCCCAAAGCCTC---CAAACTCATGCAGTTTGATCAGGCAG----CCAGCAGATGCAGGTGACAGGCACTGTTGCCACCAGCCAGGATGGCCAGTAGTCAGTAGCCCAGTGCCCTTCCCAGGATGCCCTGCATCCAGGAGGGCCTTGGCTTCCTGGGCTGTGGCTTGCACAGAGGACACAGAAGGAGGG--AGGGAACATAGGGTTAGCCCAGAAAGTCCATCATTCCCTCACTTCCAGAGCTCCTCTCTACAGCCAGCCTCTGCTGGCTCCCTGGGGAGGGTGGACTCCTGGGCTGCAGAGGGGCTGCCCACTTCTTCCAGAGGGCCTGGCCATGGGTGAGGG s mm3.chr4 1406986 656 - 152921959 TTAGTGTAGTCTGCAGCCAGAGGTGGCCACCTTGCGAGTTCTCAGCTTCAGTTTCTTTAGCCCACTGTGGCTGGGGTCCACTAGGAGTCCATTCTGGACTGCTGTCCAGGCCTCCTCAAAGTGCTCCTCCTCTAGACAGCGCTGGCCATGGATCAGGAACACACTGGCTGTCATGGCCTGGCCTGGTTGCTCCAACAGGCTGTTTTGAGCCTGGGCTGGTGCCAGGGCCAAAGCCTGGGTAAAGGCCCCTGCGGCTCCATCCTTATCCCCCAGGCTCAGAAGCAGTCGACCCCGGGTGCAGAAATCTTCCGACTGTCTTGGCAGGTCGCTGTCCTCTGCAGGGTGCTGCAGCACCCGGTCCAGGTCCCTGAGTGCCCTGTCATACTCCTGCAGCTGGGTCAAGCAGGCCACCCGGAGACGCAGATGGTAAGGATTGTTGCCCCCAGCCAGGATGGCCAAAGAACAGTAGCTTAGTG-CCTGCCCCGGATTCCCTAAATCCAAGATGTTGCTTGCTTCCTTGGCAGCGGTCTGTGAAGGGGACAC------AGGGAAAAAGAGCGCAGAGTGA--------------------------------AGTCTGTGGACATAGTCAGCCTCTGCTGGTGTCT-----------GGTCCTCGCCCTGTGCAGAAGACACCCACACTCT---GGAGGCCTGGTCATGGGTAGGGG s rn2.chr5 3230941 646 - 191625135 TTAGTGTAGTCTGCAGCCAGAGGCCGCCTCCTTGCGAGTCCTCAGCTTCAATTTCTTTAGCCCACTGTGGCTGGGGTCCACCAGGAGTCCATTCCGGACTGCTGTCCAGGCCTCCTCAAAGTGCTGTTTCTCTAGGCAGCGCTGGCCATGGATCAGGAACACACTGGCTGTCGTGGCCCGGCCTGGTTGCTCCAACAGGCTGCTTTGAGCTTGGGCTGGTGCCAGGGCCAAAGCTTGGGTGAAGGCCCCCGCGGCTCCATCCTTATCGCCCAGGCTCAGAAGCAGGCGACCCCGGGTGCAGAGATCCTCTGTCCGTCTCGGCAGGTCGCTGTCCTCTGTAGGCTGATACAGCACCCGGTCCAGGTCCCTGAGTGCCCGGTCATACTCCTGCAGCTGGGTCAAGCAGGCCATTCGGAGACGCAGGTGGTAAGGACTGCTGCCTCCCGCCAGGATGGCCAAAGAACAGTAGCTCAGTG-CCTGCCCCGGATTCCCTAAATCCAAGAGGTTGCTTGCTTCCTTGGCAGCGGTCTGAGAAGGGGACAC------AGGG--AAAGAGCTCAGAGTT---------------------------------AGTCTCTGGGCACAGCCAGTCTCTGCCGATGTCT-----------GGTTCCCTCCCTCTGCAG-AGACGCCCACACTCT---GGAGGCTTGGTCGTGGA------ a score=32452.000000 s hg15.chr22 14436420 601 + 49476972 CCAAAGGCTGTTGCTGGCCAGACCTGCCCACCTCCCCTCTGAC-CTGCAGGCAC-----TTGCCTTTTCAGAGTCATATTTGAATCCTACTCTTCACATCAGGGTTCAGGCAGCTGTCCAAACACCTTATCTTTTCATCTCTGACCATTTCTTCAGAGTCGACTATGAGCAGAAATCACCCAGACACCCCACAGGTAAGTCCACTTGCCTCACATGGCTCTTCCTCTTGTCAAGAACCTACAAGGGCTCC-CAGTGCCTGAGGAATAAGGTCCACTGGAGACCCTGCCTTTCTTGCTGCCCCTCTCACCCTCTT----CTCCAGGCAGCCAGGCAATCCTCAACACTC----CTC------CCCTCA------AGGAAAGCACACTGCACCCCAGGATTCTGCAGGGGTGCTGCTGTAGGGAGCAAACCACACA------CCACTGAGGCCCGCTTTCCCTGCT-GAGGGG--GGGGCGTCCCAGGGCCCCACACAGGTCCAGGGTCCTGGCACTTTGCTACTGGGCTCCTGCGGGGAACAGTAATGGTCTCTTCC--CACCAGCCTGTGAGCAGCAAAAaggca-----------ggactggg----------------------------------------------------------------tcttgaacccagtctcc---ctccttgctgtgtaaccctgcgtgagctt s mm3.chr4 1407666 535 - 152921959 CTGAGGGCTGCGGCTGGCCCAGCATGTCCACCTCCCCATAGTCCCTGAAGGCAACGTTGTTTCCCGAGCAGAGGCAGGTTTGCACCC----------------------GAAGTTG-CTAAGCATCTTCATCTCCCCTCCCTGATCCTGTTTCTCTAGGCCACTATGAAGGCAGGCAACTTCATCTCATCA----TAAATTCGTTAGACTCACAGAATTCCTCCTCTGCTCAATAACCTACAACGGTTCCACAGAACCTGAG----ATGGGCCTCTGG-------------------GTCCCTCCCTCCCCCTTTTAACTGCATCCAGTCTCACAGCATACAACACCATAAACTCTAAAG-CCTTCAGAGGCAGGTAAAGCTCCGAGCATCCCGGGCC------GAGTCACTCCTATAGGGGATAAACACCACA------------------GATGTTTTTGCTAGGAGGGCTGAAGGGTTCTGGGGGCCTATAGGG--AGAGGACC---------TGCT------TTCCAGCATGGA-TTGCAGTGCCATCTCCCGACACTAGACTGAAGGCTC---------------------GCACATGA--------------------------------------------------------------------GCACCCGCTTTTCTTGTTCCCTGCTGTGTGACCCTGCCAGAGCCT s rn2.chr5 3231599 627 - 191625135 CTGAGGGCTGCAGCTGGTCTAGCAAGTCGGCCTCCCCTTAGTCTCTG--GGCAACATTGTTTCCAGAGCAGAGGCAGGT-----CCC------------------------------CTAAGCATCT-----CCTCTTTCCTGATGCTGTTTCTCTAGGCCACTGTGAAGACAGGCAACTCCATCTCATCA----AAAGTTTGTTAGACTCACACGATTCCTCCCCTGCTCAATAACCTACATTGGTTCCACAGAACCTAAG----ATGGACCTCTGG-------------------GTCCCTCCTTTCCCCTTTTAACTGTATCCAGCCTCACAGCACACAACACCCTAAACTCTAAAATCCTTCAGTTGGGGGTAAAGCTCAGAGCATTCCGGGCTTGT-CAGAGTCACTCCTACAGGGGGCAAACACCACAGGACAGTTGCTTAGGTCGGATGTTTTTGCT-GAAGGGCTGGGGGG--AGGGCGGGCTATAGGGACAGAGGACC---------TGCT------TTCTAGCACGGG--TGCAGTGCCACCTCCCAGAACTAGACTGGAGGCTCCCAGGGAGGGCTCTGAGGCTAACACAAGAGCACCTGCTTTTTTTTATATATTtggttgtgagcctagcctttaacggctgagccatctctccagcccGCACCTGCTTTTCTTGTTCCCTGCTGTGCGACCCTGTAAGAGCTT a score=12490.000000 s hg15.chr22 14437173 132 + 49476972 AGCAGAGCAGCATGGGGGGAAGCAGCCCTGGGCCCCCTGAAGTCCTAGGTGGGCAAACACAGACTACAGAGGGAGCTCCCTTTTCAGATTAGTGGTGAAATGGTATCACATCAC-CAGGAGGGTGTAGAAATC s mm3.chr4 1410834 113 - 152921959 AGCAGAGC----TGAGAGGCAGC---------CCCCCTGAATTCTTTGGAGGGCAAAGGAAGGTTACAGAGAG------CCCTTCAAACAAG-GGCGTCAGAGACCCACATGGCACAAGTGGATGTACAAATC s rn2.chr5 3234865 115 - 191625135 AGCAGAGC----TGTGGGGTAG----------TCCCCGGAAGTCTTTGGAGGGCAAAGGCAGGATGCAGAGAG---CATCCCTTCAAACAAG-GGTGACAGAGACCCACACGCCACAAGCGAATGTACAAATC a score=24599.000000 s hg15.chr22 14437568 238 + 49476972 CAGGGAGTTTGGA-------GTGGAAGGGACGTGAGAAGCTGTCCTGGTCTAAGT-ATCTTTCTCCCATTTTACATAAAGGAATACACAGTGTCAGAAGGAGGACCTGTGTCCAGCCCCTGTGTTCCCCACTCCTGGGCAGATGCGTACCCAGTGCAGCGAGAATGTCTGCGAGGGGGACTTGTCAGCTCCACTGCTCAGCACTGATTTTGATCAGCATTTCCCCAGTGGCAAAGAGGCACTTAAt s mm3.chr4 1411211 223 - 152921959 CACAGGGGTTGGA-------GGATTTGGGGTGTTAGAAGCCA---TAGTCCAGAG-TTCCTTCT-CCACTTCACAGGGAGAAACACTAAGGGTTGG-----GAATGTGGCACAGAGACCCATGTCCCCTGCCCTT------ACACACACCCAGTCCTGTAAGGATGTCTGTGAGAAGCAGGCGCCAACTGGGCTGTGTAGCATTTATTCTAATCAGTGCCTTCCCCATGGCAAGGAGGCCTTGAGT s rn2.chr5 3235364 231 - 191625135 CACAGGGGTTGGAAATTACAGGATTTGGAGCCTTAGAAGTTA---CAGTCCAGAGGCTCTTTCT-CCACTTCACAGAGAATAGTACAGAGGGTACG-----GAATGTGGGACAGGGGCCCATATCCCCTGCTCTT------ACACATACCCAGCCCTGTGAGGATGTCTGTGAGAAGCAAGTGCCAACTGCTCTGTGCAGCATTGATTCTAATCAGTGCCTCCCCCGTGGCCAGGAGGCCCTGGGT a score=16788.000000 s hg15.chr22 14456041 145 + 49476972 ----GTCTGCCTACCCTGCAGGGAGTGCCTCTCCTCGGCCATCAGCTGATCCAGTGCCCAGAAGGTGTCTTCCTCTGGCAGATACAGGAGGAGGATGGCAGTTAGGCAGCTCATGTCCCTGTGGTAGCCCACTTCCTGCAA---GAGCCAGA s mm3.chr2 175027542 145 - 181423755 ----GCTTTCTTACCGTGCATTGCGTGCTTGGGGCCCGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCTTCCTCGTTCATGTACATGAGGAGCAAGGCCGTGATCTGACTCATCCCTTGGCAGTACCCGACTTCCTAAGA---AAGGGAGA s rn2.chr17 79355446 152 + 93540836 GCTTTCTTTCTTACCATGCATGGCGTGCTTGGGGCCTGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCCTCCTCATTCATGTACATCAGGAGCAGAGCTGTGATCTGACTCATCCCTTGACAGTACCCGACCTCCTAACACACAATGAGAA a score=18161.000000 s hg15.chr22 14466124 439 + 49476972 TGCACCTGATGTTCACCAGGGGCCTAGGAATCCACTTGCAGCCTGGGATC------CTACAGGGGCCTAATGTTACCCTGCAGATTGGGTAGCCACTTGGAGATCAGGTATCAACCTGGGGACTGTGGTTGACCTGCAGGCTAATGTCCACCTGGGGACTGGTTATTCACCTGAGGCCTGATGCGCACCTGGGGCCGAATGTCCCCCTCAGGGTGAAT-TCCACCTCAGGCCTGTATGTCCACCTGGGGCCTGATGTCTGCCT-TAGATCTGTGTCCCACTGGGGCCTTGTGTTCACCGGGGA-----------------CTGGTATCCAGCTGTGGCCTGATGATCTACCGCATCCTGTTGCT--CACCTATGGGCTGGTGTCTACCTGGGGCTTGGTGATCACCTGGGAGCCAG----ATATCAACTTGGGGCCTGGGTGTCCACTTAAGGCCTGATGTGGGCCTGGG s mm3.chr12 96148732 434 + 114462600 TGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTC-AGTGTGCACCTGATGGTCA-GTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGTG-GCTGGGTACCTGAGGGCTAGTGTTGCTAGAATCT--ATGTGGTCCAACACCTGGGTGTA-AGTGTGGCTGGCACCTATCGGTCAGTG--TAACAGGA----------CACCTAGGGGGCAG----------------ATCCTGGGCTGCCGCT--AGGATAAATGTGGACTGGAG s rn2.chr6 121204990 344 + 146362310 TTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATC-AGTGTTCACCTGGTGGTCA-GTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTGA------------------------------------GGGTTAGTGTT-GCTGGGAA---------------TGTGAGAATC----TGTGGTCCAACACCTGGGTGTA-AGCATGGCTAACACCTATTGGTCAGTG--TAACTGG------------ATCTGGGGAGCAGCTCACTCAAAGCTTTCATCCT-GGCTGGTGCT--AAGATAAAGGTGGACTGGGG a score=10778.000000 s hg15.chr22 14467625 123 + 49476972 TGTGTTAATGTG--GCCTAATGTACTCCTGGGTTCTAGGGTCCTCTTGGGACCTGATGTCTACCAGGATCCTGGTATCCACCTGGGGCCTGGTATCCACCTAGGGCTTGATATTCACCTGGG----GCC s mm3.chr9 120634760 127 + 124467299 TGTGTAACTAGA--TGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTACCATGCACCTGGATACTGCC s rn2.chr8 124186120 123 + 127756414 catgcacctggatttgctgccatgcacctgga---tgctatgcacctggatgctgccatgcacctgga---tgccatgcacctggatgctgccatgcacctggatgtggccatgtacctggatgctgcc a score=20161.000000 s hg15.chr22 14468254 362 + 49476972 CTGAGTTCTGAGTGTTCACATAGGGCCTGCTGTCAACTTGGAACCTAAGTATTTACCTAGGGCCTGGGTGTCCACCTGGGGCCTGACTTCCAACTGGATCTTGTGTCAACATGGGGCCTGATGTCCACTTTGGGCCTAGGTAACTTCCTGACGACTAATGCCCACATGGCTCCGAAGGACCATCTGAGGCCTGGTATTAATTTAGAGACTGGTATCCACCTGGGGTCCAGGTATCCACTTGGGACCTGATGTTCACCTGGAGTGTAGGAATTCACGTGGGGCCTGGTGTCCACCTTGAGTGTGTGTATCCAACTGAGTGCTGGTGTCCACCTGGAGTCCAGTGTATACCTGGGACCTGATGT s mm3.chr12 96148682 341 + 114462600 CTGCTTCCTCAACCTCCACCTGGGAGTCAGTATACACCTGGGA-GTCAGTGTGCACCTGGGA-GTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGG-----GAGTCAGTGT-GCACCTGATGGTCAGTGTGCACCTGGG------------AGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGG-GTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGT s rn2.chr6 121204940 255 + 146362310 CTGCTTCCCCAACCTCCACCTGGGAGTCAGTGTGCACCTGGAA-ATCAGTGTTCACCTGGTG-GTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGG-----AGGTCAGTGT-GCACCTGGGAGTCAGTGTGCACCTGGA------------AATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG------------------------------------------------GCACCTGA------------------------------------GGGTTAGTGT a score=149.000000 s hg15.chr22 14468616 97 + 49476972 ACATATGGGACCTGGGCATCCATCTAGGACCTGATGTTCACATAAGGGCTGGCATTCTCCT--GGCCTGGTTCCCATATGGAGCCTGGGCGTACACTTG s mm3.chr12 96148877 99 + 114462600 GTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTG s rn2.chr6 121205135 49 + 146362310 GCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTG a score=24255.000000 s hg15.chr22 14469377 244 + 49476972 TGCATCAAGACCCAGGTTGACACCCAGGCTTCAGGTGCACACTAGGCCCAAAGTGT--------------ACACCCA---------------TGCCCAGGTGGGCATCAGGCCC---------------------------------AAGGTGTACACCAGACCCCAAGTGGACATCAGGTTCCAGGTTGACACCAGTCTCT-----------------AGGTAGATCCTTAAGCCCCAATTGGTCATCAGGCCCAAGGTGGATACCTTGACCCCAGGGGGTCACTAGGTCCCAGG-------CAGGCCTCAGGTGGACACTAAGCCCTA s mm3.chr4 151352257 277 + 152921959 TGCCTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCAATATATGACAAACGGGCTCCAAGCCCAGGCCTCAATAGACAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCA-GTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAG-TCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACATTCAGGCTCA s rn2.chr5 188219789 321 + 191625135 TGCTTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCAATATCTGACAAGCAGGCTCCAAGCCCAGTCCTTGATAGACAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCA-GTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAG-TCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACATTCAGGCTTA a score=585.000000 s hg15.chr22 14469993 91 + 49476972 TCAGGCCTCAAATGGATGCCCAGGCCCCAGGTGGATATCAGGCCTCAGGCAAACACCAGGCCCCAGGTAGACATTAGACACGAGATGGACA s mm3.chr2 16604334 89 - 181423755 TCCAGCTTCCAGGGGTGTTCTAGCTTCCAGGGGTGCTCCAGCTTCCAGGGGTGCTCCAGCTTCCAGGGGTGCTCTAGCTTCCAG--GGGTG a score=23892.000000 s hg15.chr22 14470084 328 + 49476972 CTCAGGCCACAAGTGAACATCT-GTCCCCAGGTGGACATCCATCCCAAGGTGGACATCAGGCCAGAGATGTACACCCAGGCCCCAGGAGAACCCCAGGCCCCAGGAGGACACTCAAGGGTCAGAAGGACACCCAGTCCCTAGGTAACTACAAGGCCT---------------CAAATGGACATGATGTTCCAGATGGATATGAGGCCCCAAGTGGATACTAGGCCCAGGTGGAC-CCCAGGTCT----------------GAGGGGTACAC-CAGGTCCCAGAGGAACACCAGACCCTAGGTAAGCATGCAGTCCCAGGTGGACATCAGGTTCCAGGAGGACACCAGGACCCAGTTGGTCAT s mm3.chr4 151352260 265 + 152921959 CTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCA------ATATATGACAAA-----------CGGGCTCCAAG-----CCCAGGCCTCAATAGA------------------------CAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCAGTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAGTCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACAT s rn2.chr5 188219792 309 + 191625135 TTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCA------ATATCTGACAAG-----------CAGGCTCCAAG-----CCCAGTCCTTGATAGA------------------------CAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCAGTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAGTCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACAT a score=1905.000000 s hg15.chr22 14470412 318 + 49476972 CAATCCACAGTTGAACACCAGTTCCCCAAGA-ACACCAGTCCTCAGGTGGGCACCTAGTCCTCTCGTGTGCATCAGGTGCCAGGC-TGACATAGGCAGCAGCTGAACTCTGGGCCTCAGGTGAACATCAGATCCCAGGTTGTCACCCAGGCCCCAGGTGAACACCAGGTTTTAGGTGAACACGAGGTCCTAGGTGGGTGTCTATGCTTCTGGTGAACCTCAGGCCCTAGTGGACACTCAGGCCCTTTATAGACATCTGGCTCCATGTGCACTCCCAGGGCCCAGGTAGACATGAGGCCCCAGAGGAACACCAGTCCTTAG s mm3.chr2 16604462 315 - 181423755 CAGTTTCCAGGGGTGCTCCAGCTTCCAAGGATGCTCCAATTTCCAGCGGTGCTCCAGCTTCCAGCA-GTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAGGGATGCTCCAGTTTCCAGGGGTGCTCCAGTTTCCA-GTGGTGCTCCAGCTTCCAGG-GTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAG--GGGTGCTCCAGTTTCCAGGGGTGCTCCAGCTCCCAAGGATGCTCCAATTTCCAGCGGTGCTCCAGCTTCCAGCGGTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAGGGGTGCTCCAGCTTCCAG a score=22049.000000 s hg15.chr22 14471556 303 + 49476972 CCATAGGTGGACATCTGGCTGCAACTGGATACT-ATTCCCCAGGTGGATACCTAGGCTCAAGGTTGACATTAGTCCCCAGGTAAACAACAAGCCCCAGGTGAATACCTATGCCCTAAGTAGACATCAGGCCTCAGGCTGACACTCAGTCTAACCTCAACATTAGGCTCCAGGTGGACACCCAGACT-CCAGGTGGATACTAGACCCCAGGGGTACACCAGACTCCTGGTGGGCATAAGGCCCCACGAGGACACTAGAATCCAGGTGTATGTAAAGCCACTGGTTGACACCAAGCCCTCAGATGAA s mm3.chr12 18313603 301 - 114462600 CCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACA-CTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACT--GACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGA-CTCCCAGGTGGA s rn2.chr6 25157125 231 - 146362310 --------------------TCAGGTGC------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACT--GATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGA-CTCCCAGGTGGA a score=175.000000 s hg15.chr22 14471930 29 + 49476972 AACATCAAACTTCAGGTG------GACATCATTCT s mm3.chr12 18313552 35 - 114462600 AACACTAGCCCTCAGGTACCCAGCCACACTGACCC s rn2.chr6 25157105 20 - 146362310 ---------------ATTCCCAGCAACACTAACCC a score=21447.000000 s hg15.chr22 14471959 390 + 49476972 CCATGTAAACTCTAGCCCCTGCTAAACATCAGGCTCTAGGTGGAAGCCCAGACCCCAGGTGCACTTCTGGCCACAGTTGAACATCTGTCCCCAGGTGAATATCAGACCATGGATGCATAGCAAGTCCCCAGGTGGACATCAGGTCAAAAGTGAATATAAGTCTCTAGGAAGACATCTGGCCCCAGGTGGATACTGAA-CTAGAGGTTTACATCGGGCCCCAGGTTGACAGCAAGGCCCAGGTAGACAGCAGGCCCCAAGTGAAGACC-ATGCCCAGGTGTATACTGAACTAGAGGTTTACATCAGACCCCAGATTGACATTCAGTCCCCAGGTGGTCATGACACCTCAATTGGACACCAAGTCCTCAGGTCGATACCCAAGTCCCAGGTGGA s mm3.chr12 18313536 368 - 114462600 CCACATAGATTCTAGC--------AACACTAGCCCTCAGGT-----------ACCCAGCCACACTGAC--CCCCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGA-CTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCC-CAGGTGTATA-CTGACTCCCAGGTGGA s rn2.chr6 25157091 265 - 146362310 CCACA--GATTCTCAC--------A---------------T-----------TCCCAGCAACACTAAC--CC------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGA-CCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTC-CAGGTGCACA-CTGACTCCCAGGTGGA a score=7504.000000 s hg15.chr22 14472595 285 + 49476972 CACATGGATACCTAG----------------TCCCCAGGTAGTAGACATCAGGTCCCAGTTTGACATCAGTTTCTGGATAGATCCCTAAGCCCCAGGTGGATATCCAGTCTCCAGCTGAACATCAGCCCTTCGTGGACACCCAGGCCCCAGGTGGATATCAGGTCTCAAGTGAACACAAGTCCCCAGGCAGACATCAGGCACCAGGTACACACTCAGACCCCAAGAGGACAACTGTCCCCAGGTTGACATCACTCTCAAGGTGTACATTAGGCAACAGATGTACACCCAGGTCCAAGGCAG s mm3.chr12 18313537 258 - 114462600 CACATAGATTCTAGCAACACTAGCCCTCAGGTACCCAG-----CCACACTGACCCCCAGGTTCACA-------------------CTGACCCCCAGGTGCACA------------CTGACCATCAG------GTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCC-AGGTGC s rn2.chr6 25157092 155 - 146362310 CACA--GATTCTCACA---------------TTCCCAG-----CAACACTAACCC-------------------------------------------------------------------TCAG------GTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCC-AGGTGC a score=26507.000000 s hg15.chr22 14472880 335 + 49476972 ACACGAGTCCCCAGTAAAACTCAAGGCCCCAGAAGGATACTCAAGCCCTAGGTGGATGCCCAGACCCCAGGTAATTACAAGGCCCCAGGTGGATATCAGATTCCAGATGAACATTAGGCCCCAAATGGATACCTAGGCACCAGGTAGACATCAGACCCCAGGTGCATCCCCCAGTCTCAGGTGCACACTAGGCCCCCAGTGAACACTGGCT-CCAGGTGAGCACCCAGTCCAAGGTAGACACCATGACCCAGGTGGTCATTAGGCCACAGCTGAACACCAATCTTGAGG-GAACACCAGATCCCAGGTGGGTACCTAGTCTCCAGGTGGATATTGGG s mm3.chr12 18313577 334 - 114462600 ACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACT-GACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCA-CACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTC-CCAGGTGGAGGTTGAG s rn2.chr6 25157115 248 - 146362310 ACACTAACCC-------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACA-CCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTC-CCAGGTGGAGGTTGGG a score=225.000000 s hg15.chr22 14473215 14 + 49476972 CCCCAAGTGGACAC s mm3.chrUn_random 115326927 13 + 117911829 CTCCAGGTGGG-AG a score=21363.000000 s hg15.chr22 14473229 374 + 49476972 CCAGCCCCCAGGTG------AACATCAAGCTTCAGGTGGACATCATGCCTCAGGTGAACTCCGGGTCCCAGCCCAGCTGAACATCAGGCTGCAGGTGGATGCCTAGGTTCCAGGTGCACAACAGGTCACAGTTGGACATTCAGCCCCAGGTGAACATCAGGCCATGGGTGGATAAACAGTCCACAGGTGGACATCAGGTCAAAGGTGAACATCAGTACTCAGGTGGACATCAGGCTCCAGGTTGACATCAAGCCCAAGGTGGACACTGAACTAGAGGTTTACACCAGGCCCCAGGTTGACACCCAGGCTCAGGTGGACATTGGGCCCCAGGTGGATACCTAGGCCCCTAGTAAACCTCAGATTCTAGGTTGACATTCAGG s mm3.chr12 18313556 356 - 114462600 CTAGCCCTCAGGTACCCAGCCACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCAC----------------ACTGACCATCAGG-TGCACACTGACCCC------CCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA-CTGACTCCCAGGTGTATACTGACTCCCAGGTGGAGGTTGAGG s rn2.chr6 25157106 258 - 146362310 ------------TTCCCAGCAACACTAACCC----------------------------------------------------TCAGG-TGC-----------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACA-CTGATTTCCAGGTGCACACTGACTCCCAGGTGGAGGTTGGGG a score=6400.000000 s hg15.chr22 14473603 68 + 49476972 CCCCCAGTAGTCATTTGGCCCCAAGTGGACACTCAGGCGCCAGGTTCACATGATGTCTTAACTGGACA s mm3.chrUn_random 115327332 59 + 117911829 TTCCCAACAGGCACAGGGTTTCAGGAGGTCA---------CAGGTAGACAGGGAATTCTGGCTGGGCA s rn2.chr10 101888123 59 + 106208427 TTCCAAATGGGCACAGGGTTTCAGGTGGTCA---------CAAGTAGACAAGGAGTTCTGGCTGGGTA a score=10203.000000 s hg15.chr22 14473671 107 + 49476972 CCAAGGGGCCAGTTTGATACCCAAGTCCTATGTGGATGCCAGGTCCAGGGTTACACTCAAGCCCCAAGTGGACACCAGGCCCTAGGTGAATAACACAACCCATGTGG s mm3.chr12 18313805 98 - 114462600 TCAGGTGCACA--CTGACTCCCAGGTGCACACTGACTCCCAGGTGC------ACACT-GACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTCCCAGGTGG s rn2.chr6 25157257 98 - 146362310 CCAGGTGCACA--CTGACCTCCAGGTGCACCCTGACCCCCAGGTGC------ACACT-GACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGG a score=550.000000 s hg15.chr22 14473778 110 + 49476972 TTATTAGGCCCCAGAATGACACCAGTCCCCAGGTTAACAGGAAGCCCCCAGTGGGCACCTATGCCCCAGCTGGACATCAGGCCT-------AAAGTGGACACCCAGGATCAAGATGG s mm3.chrUn_random 115327045 107 + 117911829 gagtgggtctccaggtgggattgggtctccaggtgggagtggacctccaggtgggag--tgggctccaggtggg-attgggtctccaggtgggagtgggcctccagg-------tgg a score=18684.000000 s hg15.chr22 14473888 347 + 49476972 ACATCAGTACTCAGGTG------GACATCAGGCTCCAGGTTGACATCAAGCCCAAGGTGGACACTGAACTAGAGGTTTACACCAGGCCCCAGG-------TTGACACCCAGGC------------TCAGGTGGACATTGGGCCCCAGGTGGATACCTAGGCCCCTAGTAAACCTCAGATTCTAGGTTGACATTCAGGCCCCCA-GTAGTCATTTGGCCCCAAGTGGACACTCAGGCACCAGGTTCACATGATGTCTTAACTGGACACCAAGGGGCCAGTTTGATACCCAAGTCCTATGTGGGTGCCAGGTCCAGGGTTACACTCAAGCCCCAAGTGGACACCAGGCCCTAGGTGAATAACACAACCCACGTGG s mm3.chr12 18313553 350 - 114462600 ACACTAGCCCTCAGGTACCCAGCCACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGT--GCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTC-CCAGGTGCAC-----------ACTGACCATCAGGTGCACA--CTGACTCCCAGGTGCACACTGACTCCCAGGTGC------ACACT-GACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTCCCAGGTGG s rn2.chr6 25157106 249 - 146362310 ---------------TTCCCAGCAACACTAACCC------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGT--ACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTT-CCAGGTGCAC-----------ACTGACTCCCAGGTGCACA--CTGACCTCCAGGTGCACCCTGACCCCCAGGTGC------ACACT-GACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGG a score=1872.000000 s hg15.chr22 14474235 76 + 49476972 TCATTAGGCCCCAGAATGACACCAGTCCCCAGGTTAACAGGAAGCCCCCAGTGGGAACCTATGCCCCAGCTGGACA s mm3.chr2 19573622 76 + 181423755 ACCATGAGCCCCAGCTAGACCATGTGCCCCAGCTAGACCATGAGCCCCCAGCTAGACCATGTGCCCTGGCTAGACC a score=20410.000000 s hg15.chr22 14474311 432 + 49476972 TCAGGCCTAAAGTGGACACCCAGGATCAAGATGGACATCAGGACTCAGGTGGACATCTGGTGACAGGTGGA-----CATCAAGCTTGGT------GTGTACCTTGTCCCCGGGTAGTCATCAGGCCCCAGTTCAACACCAGTCCCTGGGTG-GATTCCTCGGCTCCAGGTGGACATCCGGTCTTCAGCTGAACATTAGACCCCAGGTGAACACCAGGTCT---------------------------------TAGGTGGACATTAGGCCCCTGGTGGACATAAAGTACCAGTGGACATCCATGTTGC-----------------AGGTGGACACCCAGCGCCCAGATGGGCATCAGGCCACATTTGGACATTGAGGCCCCAGGTGGATATCAGGCCTCAGGTGAACCCTAGGTCCAACATAGACATCAGGCCTTAGGTCGACACTCAAGCACCAGATGGACTGCTGCACCTAAGTAGAAAACAGACCCCTATC s mm3.chr4 151352173 413 + 152921959 TCTGATCTGAAGTGGTCAGGCGGGCCCAGG------GTCAGAGGTT------ACATCTGGGGGAATCTGGAAGATCCATCAACCCCCATCAGACCATGCCTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCAATATATGACAAACGGGCTCCAAG------CCCAGGCCTCAATAGA----CAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCAGTGGACACTCGGGCC-C-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACC-AAGTCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACAT------TCAGGCTCACACCCAGGCCCCACTCTGGGAACATTCACTATGGAGAACAGAGGCTCTTATC s rn2.chr5 188219788 374 + 191625135 -----------------------------------------------------------------------------------------------ATGCTTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCAATATCTGACAAGCAGGCTCCAAG------CCCAGTCCTTGATAGA----CAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCAGTGAACACTCAGGCC-CGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATC-AAGTCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACAT------TCAGGCTTACACTCAAAGCCCACTCTGGGAATCTCCGTTGTAGAGAGCGGAGGTTCTTATC a score=21119.000000 s hg15.chr22 14474743 226 + 49476972 TGGATATCTAAGATACAGGTATACAACAAGCCCCAGGCTGACATCCAGACCCCAGGTGGACACCATAGCCCAGGTGAACAGCAGGCAACAGTTTGGCACCAAGTACCTAAGTGAA-ACAAAGCCTTAGGTGATTACCAGGCCATAGGTAGTCATTAGTCTCCAGCTGGACAATAGTCCCTAGGTGGATACCTAGGCCCCAGGTGGACACTAGACCCCAGATTAACAC s mm3.chr12 18313665 224 - 114462600 TATACA-CTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATC-AGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA-CTGACTCCCAGGTGCACACTGACTCCCAGGTGTATAC s rn2.chr6 25157133 208 - 146362310 --------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACC-AGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACA-CTGACCACCAGGTGAACACTGATTTCCAGGTGCACAC a score=17841.000000 s hg15.chr22 14475137 374 + 49476972 CCCCAGGGGGACACCAGGCATTCATGAACTTCAGGCACCAGCTGTACATCAGGTTCCAGACAAATGTCCAGGCCCCAGGTGGATATCAAACCTCAGATGAACACCAGGCCCCAGGTAGACATCACAAACCAGGTGGACACTCAGGCCCCTACTGAATATCTGTCCCCAGGTGGACATCCATCCCAAGGGGAACATCAGGCCACAGATGTACACTTAAGCCTAAGGCAGACCCCAGGCCCCAGGAAAACTCCAGGCTCCATGAGGGCACTCAGACCCCAGGTGGATGCATTGGTCCTAGGTAAACACATGGCCCCAGGTAAGACATCAGGCTGCAGTGAACACGGGAGCCCAGGTGGGTACCTAGTCCCCAGGTG s mm3.chr12 18313585 317 - 114462600 CCCCAGGTTCACAC----------TGACCCCCAGGTGCACACTGACCATCAGGTGC-------ACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGAC-------------------TCCCAGGTGCACACTGACCATCAGGTGCACACTGA-CTCCCAGGTGCACAC-TGACTCCCAGGTGCACACTGACTCCCAG------------------GTGCACACTGACTCCCAGGTGTATA-CTGACTCCCAGGTG s rn2.chr6 25157123 231 - 146362310 ----------------------------------------------CCTCAGGTGC------------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGAT-------------------TTCCAGGTGCACACTGACTCCCAGGTGCACACTGA-CCTCCAGGTGCACCC-TGACCCCCAGGTGCACACTGACCACCAG------------------GTGAACACTGATTTCCAGGTGCACA-CTGACTCCCAGGTG a score=15659.000000 s hg15.chr22 14475511 304 + 49476972 TGCATCAGGCAGAAGGTTGACCCAGTCCCCAGCTGAACTCTGGGCCCCAGCTGAACGTCATAACCCAGATGGTCACCCAGGCTCCAGGTGAACACATAGTCTTAGGTGGACATCAGGCCCCACATGAACACCCAAGCCCCAGGTAGAGATCAGG-CCTTAGGTTTACACCAAACCTCAGGTGGGCATCTGGCTCCAGA-------TGGCCAT-AGGTGGATAACTAAGCCTCTCCTGGATATCAGGCCCCAGGTAGACACCAGGCTCCAGGCGAACATCTAGCCCCAGGGGGACATCCAGCCCCTGGTGGACA s mm3.chr12 18313570 300 - 114462600 CCCAGC------CACACTGACCC-----CCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACA-CTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCAC-ACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA s rn2.chr6 25157108 214 - 146362310 CCCAGC------AACACTAACCC-----------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CA-CTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAAC-ACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACA a score=249402.000000 s hg15.chr22 14478865 2782 + 49476972 GGA-AACATTAGGATGAATGATATAAAAGAACTAAAATCAAAATGAAAATAAGTATGCTGACTCCTCACACTCTCTTTTATCTCCATGATGAAATAAATACAATTTAAATACCAAGATATGATATACATATTAA-ATGAGTTTTGA--GGAAGGACAGTAAAAAGTAACCATGCATCTTGTATTAATGAACCAGATAACCTATGACATATGGTTTTAGCAGTAAGATTTGATAA--------------------------TATATGTATTTCA-----------------TATTATTTCATAAGA----------------------------------AAAATTATACAT----------------GGATTTTTCTAGTGGCTA--CTTCATCTCCCACTTCT-TTTCATAGTACTGACTAGATTTTAAATTACTGATCATAATGTGTCTTAGTTCACTGAGATGATAAATAGCAAAACATTTCGAATTTAAATAAAGG------AAAGAAATTTTAAGTTTGATTTT-----------------TCCACTAAGCTGAGCTACCTT--------CCAATTAGATTATTTGAGATCTCACAAACAAAATAGTATCACAGCAGGACATAACCTCAGGATTCCTTTTCACATCAAAGTTTTTTACTTTCAAAACTCCAACCTTTACACTATATTGATATAAACGGCGGCAAGACCCGTAGACGGG-AGGTAATGTTATAAATGTACAAATTCCTTATCTATATTTAGATTT--ATACTTTACATAAAGATGTTCCCAAAACAGAAATAATATTATTAGAAATACTAAAATTGAATTTCATCAATACCTAATTTAGATAATAATTATGAGAAAAAGCATGTATTACACTTCATTGTACCTTAAATTTTTCCCATACCTTCATTCACTAGATTCACCATCAATTCAAAATTAGATAACCCATGAAGGAGCT--CA-TGTATATGTATATATACTGATGAAGCACTACTATGTTACTTTTGGAATAAAAATTAATGCTTATCTATATAAC--TTGCCCATTAAAATCCCCAAGCATGGCAATGTGTATAGTCAAAATAGCTACTAGAGTTCATTTTTAAATTCTTGTATATATAATTCTAAGATATAACAGTAAATTAGAGTCTGGCACATAAGGTTTTTTT---AAATAAAAGAGAAGCTATAA-AAATGCACATGAAATTACACTCATTAGAAGAGACTTAATTTTTACATAAACTTGGATTTGCCACTAGTTAGATTTGAGTCCTCAAACATAAACTATATATAAATAAGGGTTGATGTCAATTAATATTATGCTAGACTTATGCCACGACAAAAGCATCATAAAATAATACCAGTCTTTATGATATAAATTATGTAATTGCTAATAAATATTATTCTTCTGAATAATTTTACCCTAGTAATTTTCTTCAACCTGACAGGGTTTCATGGACAATTCGAACCATGAGTATATGCAAATGATAAGGTCAGGATTCA----TATTTTACCTCAACATAGTATATTATAATCACTATGCTATCTTTGTTAAGGATTTTCTATTTATTGTCACAAAAGGCATTCCT--------------TTATAGTATAAC-----------------------------------------------------AACCTAAATGTCAGGGTTTTCTTTATTTAT-------TGTATAAATATCTATCTGCATTAGTTCTAAAAAA---TGTATTAGCACTTTAAGGGCAGAACCCAAATACTGTAATACATTTACACAGCACTGAGTACATCATGTATAGTCTAAGTGTGTATAAAATACCAGCAATTGTACATGTAAAGAAAACTTACCAGACAGTTGTTTCCACTTGACTGTCATTGAGCTGCCAATTATCCAACTGGGGAAACAGTGGAAAAAGCACTTGAATCTGTCCAATTGAATGAATTGCACTATGAATTGAATGTGTTACTATCCCTTTCACATCCTATGTCTAAAAACAAAAATGTTTATTAAACTTCTATAGAATGATTTTCATCACTATTTCCTTGGTCCAAATACGTTTATAAGG-GAATTAAATAACATAGTTGGAAATTTTTTAAGCCCTCAATTA-TAATTTTTATACACATGTAAGACAAAAAAGTGAGTACCTTTG-CTAATCACTTTTAAATTTCAAATCTTAGGTCAACCTAAGATTTTTTTTTACACTAAAAATATGAAGTTAAAATCAAATGTTATTTTAAAATCAGAAATACTATTGATGGATTTAAAGA----CAAGTAATTTTAATGTT-ACAGAATATTAGTAATACAATCTTAAAGCAAAGTATGTTTTTATGTCTAACAACTAACTTATTC----AGTTAATTGATTT-AATTTGAAAGGCTGTATAATATATAAGATAATAGGTATGACAGATTTCCTACTAAGGAGACAAGGCCAGGGTAGAGCATATTGCTACAGAAAAGATAGACATTCTTTAAAGTTTCACTTAAAAGATCTGCAAAAGCCAAAAAGAAACAAAA--AGTCACAG-ATTTATAGATGAGCAATGTTTGatatataaaataaaaatattgttaaattCTGACAAGAACATGAAAACAAAGCCATGATTCACCCACCGGAAGCATTAGAGCATGTTGGGAATGCACAAAAATTGATGCATCCTCTTTTGGTGATGATTCCAGGCAGAGTTGAGTATCAGTGGCCCTAGCAATTATATGTAAAGGCAATGCTACTTGCAAGTTTCCCATCATATAAAACCTGTTTATGATGTTCTGCCAAATGAATATCACTCTTAGATTTAAACTTGAAGGTACTCTGAAAAAATAAAACTAAGGTAAACCCTGTTTTTAA-----AAGCAACA---ATTAAAAAGCCAAA-----------------------------------------------------------------------------GTTTTAAAGCAGAGAAACATTTGCAATAAGAAAGTACTTGTGTACCTTTCATGTGTCAGGGACTATTCAGTGGTGTTACTTACTTCGTTATAGTCACTTCAATTCAATGAGAGTT s mm3.chr3 56229795 2733 + 160674399 GGA-AAAACTGAAGTGGATGATAAAAACAA---TGAATAAAATCTAAAAGCAGAATACTGACTTTTC-----CACTTTCATCTCCTTGATGaaataaataaaacttaaatattaaaata-aatataaGCACTAAAATGAGTTCTGA----------AGAAAAAAAATTCCATAG---TTGCTTAAAAGCCCCAACCAACC-ACTATATGTGGTATTAGCATTAAGATTTTATAAAAGCTATTCATAAAACaaaatattgttataataattttatttataaCACTCCAAACTATTATCTTTCCAAACCTTCACTGAAAAATACAATCTCTTCTAGGTAATAAAATTTAAAATGCCAAGTAATTCTTAAGGATTGTTTAAATAGCAAGACATTTTCTCTGTTTTTTTCTTCATAGTATTTAT-----TTTAAGA-ATAGGCCATAATGTATTACACTCCCCTTAGATGATAAACaa-aatattttttt-atttaaattCAGGATCATGAAGCACGGTTtttgtttgtttgtttgtttgtttctctgtttTCCCTAAACTGATCTATTTTTGATTTCCTGGATGAAAATAAGCAAGCATTCA-GTGCAAAGTAACTGCCCAA-AGGACACAACCTCAGT-TTTCATTTCACTTCAAAGCTCTTGACGTTCAAATCTCCAACCTTTATATTACATTGAAATAAAATAAAGGATAACCCATAGATGGGCAGTGAGTGCCATAAATA--------------TTAGATTTACATTTAAATATGTTTTAGAAAATTGGTCTCCATACAGAAACAATAACACTATCAATACTAATACAGAA-GACTTCAA-AGTCAACTCAGCTAAT-----TTGAGAAAATCATGCCTTACATTTTACTAGATCTTAAACTTTCCCCACAAC------------------------TTTAAAATGCAACAACCCATTAAAAAGCTAGCA-TGTATGTGTATATATATTCATGAAG----TCTTTATTA-TTTTGGACTGAAAAATAATGTTTGTATATATAAC--AAGC---TTAAAATC-----------CAAAGCAAAGTGGCTTTATAAT-------------CCTCAATACCTTA------------GAAAATACA----TGAAACAGAGCTTGATATATAAGACATTTTT-----TAATAAGGGACGTAATAAGAAGTAAACACAAATTGAACTTCA-TAAAAGACATTTAATTTTTACCTGAACATGAACAAACCACCATTT---TTGTGTCCCTCAAAAGTGAAGCATATTTAAAGAAAAGCTCATGTTACCTAATACTGTTCTAATCTTAATTAGTGGC-ACTGCATTATAAAATGA-GTAACT--TTAAGCTCTAAA-TATATAACT--TATTGAATATACCTCATCTTAGTTGTT---------TAATATAATCTTATCTTATAAG------------------ACCTTGAACATTTGCTATGGCTAAGTTTGAAGGTAAATAAGTCTTTTCCTTCGC--TGTATATCATACTCACTTTATTACAT---CTAGAATTATTTCTTTCACTTTACAGAAAAAGATTTTTTATGGTAACTGTTTTT-TATTATGCAGGTGCAatatatatatatatatatatatatatatatatatatatatatacacacacatatatgt-atgtatgtatatatgtatatatatatatatatatatatatatGCCTCAGTTCTAAAAACATTCTTATTAGCACTTCA---GAAAAGCCCAAAAGCTGTAATATA-TTACATGGTATGGAATACGCCATGAAGAACCTAGGAGTGCAAACAGTA--GGATATGGTACA-GCAAAGAAAACTTACCAGACAGTTGTTTCTACTTGACTGTCATTAAGCTGCCGATTGTCCAGCTGGGCAAAAAGTGGGAAAAGTACTTGAATCCCTCCAATTGAATGGATTGCACTATGAATTGAATGTGTTACTATAGCTTTCACATCCTACAAC-AAAGACAAAAATATTTGTCAAACTTCCATGACAAGATTTTTGTCACTATTT-CTTCCCATAGGTATCATTATATGGCTAGTGTCCCCTGATACTATAAGAATTCTCAATCATGTACTTATTGATAGGCACACATGTATACAGTAAAAATG-ATGTATCTTTGACTAGTCACTTTCAAAGCTTGAAT--------AAGCTAAGCCATTATCCTAATC------TATGAAGGC-ATTCTAA--GTTATTCTAGAA--GAAAGTATTATTATTGGATTTAAGGACATTCAAGTAATTTTCAAGTTGGCAGA-------TAAGACCTTCTCAAATCAGAATAT-TTTTTATACCTAGTAAC-ATCATGTTCAGGAAGTCAACAGACTTGTATTTCAAAGGACATGGAA-ACACATGATAACAGATGGGGTAAATTTCCAAGGCAGTCAAAAAG----------------TTG--------AAGACAGAAACTT-------------------GGTTTACAAAAGC-----AGAAGC------AGCAGTAGCATTTGCAGGTGAGCAGTGCTTGCTATGG-GAAGGAACACA-GGCTGGGTGCTGAC---AGCATGGGT--CGAGCCCCG-CCCACCCACCTGGAGCATCAGTGCATGTGGGGAGTGCACAAAGATGGATGCATTTTCTTTTGGTGAGGACTCCAGACAAAGCTGAGCATCGGTGGCCTTGGC-GTTGTAGGAAAAGGCAATACTACTGGCAAGCTTCCCATCATACAGAACCTGTTTGTGATGTTCTGCCAAATGAATATCACTCTCAGACTTAAACTTGAAGGTACTCTGTAAAAATAAAG-TTTCATTAATACTCTTTTTAAGGAATCTTTAAGG---ACTGTAAA-----------------------------------------------------------------------------------TCTTTAAAGCAGAGAAACAATGGCAG-AAATGATTTCTTGTATTCCCTCCA-GTATCTTACCCTGCATCCCAGTGTTGCATATCCTGCTACTCTCACTTCAGATA--CGAGAGTT s rn2.chr2 140590949 2705 + 246339213 GGAGAAAACTGA---GGATGATAAAAAAAA---AGTATAAAATCTAAAACCAGAATACTGAACTTTC-----TACTTTCATCTCCTTGATGAGATAAA----ACttaaatattaaaata-aatataCACA-----ATGAGTTCTGATCTCAAG---AAGAGAAAGATTCCATAAATATTGTTTAAAATGCCCAGCCA-----TTATATGTGGTATCAGCACTAAGATTTTATAAGAGCCATTCATAAAGCaatatattattgtaataattttatttataaCACTTCAAACTATCATCTTTTTAAACCTCCATTTAAAAATACAATCTCTTCTAGGTAATAAAATTATAAATTACAACTAATTCTTAAGGACTGTTTAAATAGCAAGGCATTTTCTCTGGTTTTT-CTTCAGAGCATTAAC-----CTTAAACTATAGGTCAAAATGTAGTACATCTCCCTTAGGTGATAAATAACAAAAAACTTCT-ATTTAAATTCAGGACCATAAAGCGTACTTCATTTTTGTTTGT------------CTGTCTTCGCTAAACTGAACTATTTT-GATTTACTGGATTAGAATCAGCA-GCTTTCA-GTGCAAAGTAACAGCCCAA-AGGACACAACCTCAGG-TGTCATTTCACC-CAAAGCTCTAGACTTCCAAATCTCCAACCTTTATATTAAATTGAAATAAAATGAAAGATAAACTATAGATGGGCACGAAATGTCATAAATAAGCA----------TTAGATTTATATTTATATATGTGTTATGAAATGAGTTCCAATATAGAAACAATAACACTACCAATACTAACACAGAA-GTCTTCAA-ATTCAACTCAACTAAT-----TTAAGAAAATCATGCCTTACATTTTATTAGGTCTTAAACTTTTCCCACGACCTCATTCACTAT-TTTTCCATTAATTTAAAATGCAACAACCCATTAAAAAGCTAATAACGTATATGTATATAT--TCATGAAACCTTTCTTTATCA-TTTTGGACTGAAAAATAATGTTTGTCTATCTAACTCAAGC---TTAAAATC-----------CAAAGCAAAGAGGCGATACAAT-GCTAAAATTTATACTCAATACCTTA------------GAAAGTAAA----TAAAACAGAGCTTGATATATAATGTATTTTTATCATTAAAAAGGGAAGTAATGAGAAGTAAATATGAATTCAACCTCA-TTGAAAACATTTCATTT------------------------------------------AAGAATGAAGTATATTTAAAGAAAAGCTTATGTTACTTAACACTGTTCTAATCTGAGATCATGGT-GTTGCATTATAAAATGA-GTAACTCTTTAAGCTACACGCTAGATAACT--TACCGAATATACCTCACCTTAGTTGTT---------CAATATAATCCGAT-----AAG------------------AGTATGAACATTTTCTATGGCTAAGTTTGAAGGTGA----GTCTTTTCCCTAGC--TGTATATCATACT----TCATTACATTAACTA----TATTCCTCTCACTTTATAGGAAAACATTTTT----ATACTTGTTTTTATATTACGCG------------------------------------------------------------------------------------------CATATATAGACATGTCTGTCTCAGTTCTAAAAACATTCTTTTTAGCACTTCA---GAAAAGACCAATAACTGTAATATC-TTACATGGCACGGAATATGCCACGAAGAACTGAAGAGTGCAAACAGTA--GACTATGGTATA-GCAAAGCAAACTTACCAGACAGTTGTTTCTACTTGACTGTCATTAAGCTGTCGATTGTCCAGCTGGGCAAAAAGTGGGAAAAGTACTTGAATCCCTCCGATTGAATGGATTGCACTATGAATTGAATGTGTTACTATAGCTTTCACATCCTACGAC-AAAAGCAAAACTATCTGTTAAACCTCTGTAACAAGATTTTCATCACTGTTT-CTTATTCTAGGTATCATTACATGG-TAGTGCATTCTGTTATTGTAAGAGTTCTCAAGCATGTAATTATTGATAGACATACATGTTTACGGTAAAAATG-AAGTATCTTTCACTGGTCACTTTTAAATCTCCAAT--------AAGCTTAGCCATTTTCCCAATC------TATGAAGCCAAAGTTAA--GTTATTCTAGAA--AAAAG---TATTATTGAGTTTAAGGACATTCAAGTAATTTTCAAGTTGGCAGA-------TAAGACCTTCTCAAATCAGAATAT-TTTTTATACCTAGCAAC-TTCATGTTCAGGAAGTCAACAGATTT-TATTTCAAAGGACAAAGAA-ACAAATGATAAGAGATGGGAAAGGTTTCCGAGTAGGTCTAAAAG----------------TTG--------AAGACGAAAACTT-------------------GGTTTGCAAACTC-----AGAAGCAAAATGAGTGGTATTATTTGCGGG-GAGCAGTGCTTGCTTTGGAAAAGGAGCACG-GTCTGGGTGCTGGC---AGCATGGGTACAGAGCCCCA-CCCACCCACCTGGAGCATCAATGCGTGAGGCGAATGCACAAATATGGATGCATTTTCCTTCGGTGAGGACTCCAGGCAAAGCTGAGCATCGGTGGCCTTGGC-ATTGTAGGAAAAGGCAATGCTACTCGCAAGCTTCCCGTCATACAGAACCTGCTTGTGATGCTCTGCCAAGTGAATGTCACTCTCAGACTTGAACTTGAAGGTACTCTGTGAAAACAAAG-TGCCATTAATACTCCGTTTAA-----CTTGAAGGTGCTCTGTGAAAACAAAGTGCCATTAATACTCCGTTTAACTTGAAGGTGCTCTGTGAAAACAAAGTGCCATTAATACTCCGTTTAACCTCCACCTCTTCAAAGCAGAGAAACAAGCACAG-GAATGATTTACTGTGTTCCTCCAA-GTACCTGGCCCTGTGT-ACACTGTTGCTTATCTTGCTACTCTCACTTCAGATC--TGAGAGCT a score=12104.000000 s hg15.chr22 14482685 116 + 49476972 AATACAAAACTGGATGCAAACTATTAATTATTAGGCATGTGCCAAGACAAGAGCAACATGAATAATTAAAAATTTGTGTATGCTGTAGTCTGAAGTATTTCATTGATAATACTTTT s mm3.chr3 56232918 102 + 160674399 AACTCCAATCTGGATGAAAACCTCTAATTACCAGACGTAAATCAAGACAAAGGCAAAATGAGCAATTAATCACATGCATATA--------------AACTTATAGATGGTACTTTT s rn2.chr2 140593800 102 + 246339213 AACTCCAATCTGGATTCAATCCTCTAATTGCCAGAAGTAAATCAAAACAAAAGTAAAATGAGTAATTAACCACATGAATCCA--------------AAGTTAGGGATGCTACTTTT a score=37174.000000 s hg15.chr22 14482851 284 + 49476972 ATATCTGCATTCAAAAAAACAATGACTGAATTAAAACACACAAGATATGTTGTT---AAACACTA-AATCAGCTTTCCGTGTC-TGCATTTTACAAATGCTGAAACATTTGTACATCCCATTGTCTAGAACAAAACTCCTGCTTTCATTTTGTTCATCTTGCTTACACTGGAATTAACAAGTTTTAGTA-TATTATCTTAAAAGATTTAAAATACTTTTGTGGA------AATGTAAGATGTTTAATAAAACCTATTCTTATTTGGAAATACATTGGTCTT----AGTTTTTCTGAGTCC s mm3.chr17 63184730 291 + 93529596 ATATCAGCATTCTAAAAAA-AAAAATTGATTTAAG-AAAATGCTGTATGATGTTAGAAGACATTGTAATTATCATCCCGTGTC-TTTGCTGTACTCGTGCTGAAGTGTTTTCACAGTCCTTTGTCTAGAAGAAAATGTTTACTTTCATTGTGATTATTTTGCT--CATTGAAATCAACAGGTTTTGATATTTTTCTCTTGGAAGATTTTTATAACTTTTTGGGAATATGTAATATAAGATCTCTAATAAAATATAATCTTATCCTG---TGCATT-GTCTTCTGGAGTAATTCTTAATCC s rn2.chr9 106136938 289 + 118059026 ATATCAGCATTCT----AA-AATCATCGATTTAAACAAAAGGCTGTATGGTGTTCTGAGACATTGTGATCACCTTCGTGTGTCTTTTGCTGTACTTGTGCTGAAATGTTTTCACAGTCCTTTGTCTAGAAGAAAATGTTTACTTTCATTCTGATTATTTTGCT--CATTGAAATCAACAGGTTTTGATATTTTTCTCTTGGAAGATTTTTATAACTTTTTGGGAATATGTAATATAAGATCTCTAATAAAATATAATCTTATCCTG---TGCGTT-ATCTTCTAGAGTAATTCTTAATCC a score=8211.000000 s hg15.chr22 14492027 632 + 49476972 CTGAATTTCTAAAAAGAAA------AAAAAAGCtttttaatataaaaaaaatttGCTGATGCCTGTCATGGTGCAATTGTACTTACAATATTTACAAATTGAGAAAATGCAT--GTACCTGTGGATTTATCATCCATCCCCACTTACAACAAGGGTGCAGTAAGCTGAGAACTTTCAAAACTTAATAAAATACTATCTGATGTAATGCCCAAATTTACAGGTATCTCTCTTAAAAGT-TCTGACTT-----TAGGTACTC--TACTGTGTGTTAGGATACTA-------AGGATACTATACTATGTCACATGAGCTGTGCACACATGATGACCG-GGTTAAAAAGAATGACAAGATGACTGTTGTTAAAAAGAACGACAAGAAAGACGTGTGAAAAGAATACTACCAACTACAGAGTTTGCAAAACTGTTCAGGACACAGTTTGCTTCTTTGTGA---ATAGAATTACAAAATTGCTTATATTCAGCCTTTTTTCTTG-ATGTTGCCAGGAAGCTCCCATCAATTCTGAAATTTCACATTAGCAATCATATTGGATTTGTATTTTCT---TGATAT--------TCTACCTTTTTATAT----TTCATTTGT-TTGCTTGTCACTG-TATTTAATATCATTCTACTAGAGCTTAAAAAGACACTACAAGTATTTTAT s mm3.chr3 56265595 605 + 160674399 ctaaatacctaataaaaaattaaaaaaaaagaGTTTTGAATATACAAA--------------CTGTTGAGTAATAGGTGTACTTTGTATTTT---GAATTAAGACAATTCATTTGTACTCATAAATTTATAATCT----CCATTTGAAA---AGGCTCAGATGTACACAGACTTTCATAACTCAGTATGATAGTTTCTCATTCCTTGCCCACAATTAGAGATATTTCTTGTATAAATGTCAGACTTTGGTGTAGGTACACCACACCCTATATTAGGAAACTAGTTGTAGAGGA------ATTCAGTGGCTTGGGATTTCTACTTATTTTTACCTCTGTTATA--------------------TATTTAAAAAAATGTCAAGAAA-------GAACAAAATGATA--AATTTC-TAATTTACAAAGCTGCTCAACACAATGCTGGCTCCTTTCTTAGAGGAAGAACTACTTAA-TATTTAGATCTTGCTCTTTCTCTCATGTGTTGTGAAGGTGTTCCTATTAATTCTGAAATT-----ATAATAGTGATACTAGGTTTATACTTAATATATGGTATAAAAATAATGTAATTTATCATCTCACCTTCATTTATATTTTTTGTTACTATTATTTAATATCATTTAACTAGTGCTAAAAAAAA------AGGTACTTCAC a score=880.000000 s hg15.chr22 14492659 36 + 49476972 GAAACAACTCAAAGAAGTAGGAAAGAAAAGCAGGCA s mm3.chr3 56266379 33 + 160674399 gagagaa---aaagagagaggagagacagagagaca a score=32536.000000 s hg15.chr22 14492784 450 + 49476972 ATGAAAGAAGAAGTAGCTGGACAGGCACAAATTCATTTCTAGAGCTAGTAAGACAAAAACAAAAATGATATGGAAAATATATGATAGCAA---GTATTGTTACCTTGACATAAAAATAATAGCATTATTATTCTTCAATATTATTATGGTTATTAAAGTCACTGAGAA-AAAAAGATCTTTTAATATAGGTAAATTCAAACTTTCCTCTCTCTCTCTCTCtatatatatatatatacatatgtgtgtgtgtgtgtgcgtatatatatatatatatGACATAAAAATA--AAAAGAGAAATACCAATGCAAAAATACAAAGGCCAAAGAGGGACTTTTTTAAAT---GTTTTTCCTTTCCATAACACAATCTTCACATTAATTATTTAAATTGAGTTC---AATAAA---TAAACCAAGCTTCCATACAAGACAAGTACTCCTTCAGAATTATAAACACTTTGAGT s mm3.chr3 56268136 370 + 160674399 ATAAGGGGTAAAATGACTATACTAAAACCAGTTGTTACCTAGGCCTAGTGAAACAAA---TAAAACTAAATGG---ATACAAGATAGCAACATGTAATGTCACTGTGACACAAAACAGAAAG-ACTGCTGT-------AAGTATTTTGGTTATTAAAATCACTGGGAACACTAAGATCTTTTAAA------GAAT---AATTTTGTTATTTCTATGTCTAAAC--------------------------------------------------------TAAAA-TAATAAAACAGAAATATGAATATAA------AAAGGTTTTAAAAGTATATTTTAATATTTATTGTTACTCTTCCATAACAAA--CTTCCCATTAATT-TAAACATTAAACTTTTTAAAAAG----CAGCAACACTTTAAATTATGGCATGTGCTCCTCAAACATTGTCA--ACTTTGATT s rn2.chr2 140617895 369 + 246339213 GTAAGAGGGAAAGTGGTTATACTAAAACCAGTTCATATCTAGACCTAGTGAAACAAA---TAAAACTAAATGG---ATATAAGACAGCAACATGTAATGTCACTATGACACAAAACAGAAAG-AGTGCTGT-------AAATATTTTGGTTATTAAAATCACTGGGAACACAAAGATCTTTTAAAA-----GAGC---AATTTTGTTATTTCCATTTCTAAAT--------------------------------------------------------TAAAAATAATAAAACAGAAATATGAATACCA------AAAGGTTTTTAAAG---ATTTTAATATTTGGTGTTATTATTCCATAACAAA--CTTCT-ATTAATT-TAAATATTAAACTT---AAAAAGAGGGCAGCAATACTTTAAATTGCAGCATGTGCTTCTCAAGCATTATTA--ACTTTGATT a score=19215.000000 s hg15.chr22 14493234 150 + 49476972 ATAATGTGTAATTCTCTTTCGGCTCCAAGTAGTTTGAGACTTCACAATTCCCAATGTGATTT-AAACAGAACCTTTATATATTTCCCTAGCCAGGTGTACTGCACATTTAAAACTAACTCATATATGTGCATGCTATATCTTACCTAGAGT s mm3.chr3 56268681 141 + 160674399 ATACTGTATAATATTGTCTCGCCTCCAAATAGTCTGAAACTGTACAACTCCAAATGTGATTTTAAAAAG--TCTACCCGTACTT-----ACCAAGTGT---GTTCATTAAAAACTAATTCATAGGAGTGAATGCTGTATCTTGCCTAAAAT s rn2.chr2 140618436 138 + 246339213 ATACTATACAATATTGTCTCACCTCCAAATACTCTGGAATTGTACAACTCCAAAAGTGATTT-AAATAA--TCTACTCATAATT-----ACCAAGTGC-----TCATTAAAAACTAATTCATAGGAGGCAATGCTGTATCTTGCCTAAAAT a score=70849.000000 s hg15.chr22 14496436 768 + 49476972 AAAGTAACTTTTCTCTTTCCTTGGTACATCAAACTGTACTCTACAGATAACAGACACAAGTGAGTTTTTCAATGGTTAAAAAAAGCCTAACTTTTGACCTTATATATGTGGACTAAAGAAAATAAAAATAAACTTGGAAACTAGCTGTGCATACTGATATTATGTATATATAGTGAAGTCTGCATTTAGTTTGAGACT-CAAAAAGAAATTTATAGAAGAAGGACACAAC-CAGGAATAAGGGAAA-AAAAAGATCCATATTAAGAATCCACAAGATATATATTACAAGTTGAAGATATGGAAATAAATTGAAGACAAA---AAAGTAC-AGATGATATCAATAA---------TAGCTAATATGTCTAGAGCACATATTACCA-TTAGGTAACATGCTAATGGTTTATACCCATTTTCACAAGTTCTA----ACAGCTGGTA----AGCGGTGCAGCTGGGAAAGCAAAAGTTTTAATG-TAAAGATTTCTTTTTGAAAGGCCAGTAAATCTCTTATTAG-------------------GAAGGATAACAACAACTTAGCTAGGGCATCT-GTGGGAAATTAAAGAAAGGAAGAAATAAGAGAATAAATT--TATTTTG----------------AATAATGAAACACAATAAAAGCAAATACTTATGAC-----TTTTCAAGGTTTTTGAGAATCTTCACAGAAGAC-TTTTTAAAATCCACATCATTCTCTGGCCCTGCTCCTAACTAGACCCTTAGTATCATTGC-ATATTGAGAGCTTTACAA--AGGAGAATGTGTTTTCCACAAGTAAACAGTGAAGAAAACACAAAATAG--------AAA s mm3.chr3 56272590 797 + 160674399 AAATTTAGTTTTCTGTCTCTTGGAACCATCAAAATG-----------TAATAGATGTACAAGAG-CTTTCACCATTTCAGAGGATCCCAATGTCTGACTTGATATTTTTAAGTTACAGACAGT---AACTGATCTGGAGAGTGCATATGCATACTGACACTAATCATATATACTGTGCCCTGCACTCAGTTTGAGATC-CAAATATTGATGTATAATAAATCTGGAGAAC-AAGAAATAAGAACAATACATATACTGATACTAAAAATTCCTGAGAAATGTATTACAAGTTAAACA-----AAATAAATGAGAAATAAGAAAAAAACACGAAATAATGTTTATAGAAATATCACTAGGTGCTATGCACTAAACATTTTCTATAAATGAGGTAAAATATTAATGG-TTACATTCATTTTTACAAGGTCAG----ACACCCCTTAGT--AGCAGTTCAGCCGAGCAAACAAAAGTTTTAGTGTTGCATATCTTTTTAGGAAAGGCCAGTAACCTATTTACTAAGGTGAAGTTTCCCCTAATTGAAGCACAATAGCAAGTCAACTACCACATGTCCTGGAAAATTAAAGAAAGaaaaaaat-------tttaatgatattttaaatgatatttttgtataataataGAGAGGAGTAAGGCAAAA-----ATTACTATAATTTTCAAAGTTTATTAAAATCTTTTCAGAAAAACTGTTTTGTATCTGTTTCATTCCCTGAGCCTCACTCTTACAAGACTCTCTGCA--ATTACTATATTTAAAATGCAAAAAACACAGGAATGCA-TTTTCATAAGCAAATAGGAAAGAATAAATAAAATGA--------AGA s rn2.chr2 140621976 772 + 246339213 AAATTTATTTTTCTGTCTCATGGAACCATCAAAATG-----------TAATAGATGTAAGTGAG-CTTCCACCATTTCACAGGATTCCAATGG-TGACCTGATATTTTC-AGTTAAAGGCAGT---AACGGATCTGGAGGGTGCATATGCATAAAGACACTGAT-ATATATACTGTGCCCTACATTCAGTTTGAGATCGAAAAAATTTATGTATAATAAAACTGTACAACAAAAAAATAAGAAAAATACATATACTGATACTAAATATTCCTGAGGTA-----------TTAAAGA-----GAATCAATGAGAAATAAG---AAAACACAAGGTAATATTTACACAAATGTCACCAGGTG------------------CTATAAGAGAGGTAAAATGCGAATGG-TTACACTCACTCTGACGAGGTCAGTAGTGCACCTCTTAAGTAAGCAGTTCAGCTAGACAAACAAAGGCTTTAGTGCTGCATATCTTTTTAGGAAAGACCAGTAACCTATTTACCGAAGTAAACTTTCCCCTAATTGAAGCATAATAGCAAGTTAACTACCACATGTCCTGGAAAATTAAAGAAAGAAAGGATT-------TTAAAT--TATTTTA---------TTTCTATAACAATAAAGAACAGTAAGGACAAATAATCATAATTTTCATTTTCAAGGTTTATTAAAATCTTTTCAGAAAAA-TGTTTTTAACCTGTTTCATTCCCTGGGCCCTACTCTTACAAGACTCTCTGTA--ATTACCATATTTAAAGTGTTAAAAACACAGGAATGCATTTTTTGTAAGCAAATAGGAAAAAATAAATAAAATGAGAACAAACACA a score=87282.000000 s hg15.chr22 14498480 977 + 49476972 tccctagtgcctacaatggtgtccaatactcagtaaataataagtatctattgaaagaatgCCATAGAACAGATGAGACTGAGATAATGAGAGAATGTAAGAGAAATACACGCAAGAGATCAAAGCACTGACCTTACAGAAGACAAAAATTAGACATAAAAGTAAAAAGAAAATGCAAACAAGGATAAGAGAAAACCATTAAAAGCATAGGAAATCCAGTGAAAGAGAATGCTACAGAGGTCATA-------------------AAAGGATAGTTAAGAATTCTGTCATAA----CAAGTGAGTTATAAAAATATTTACTTTTACCTACCTTACGTGGTTGAAAATCATATTTCACACAATGCTGAAAACATTTTCCTTTGGACTTCGATGATGTGACTATAAAACAGTTGCCAACAAAATGAGCAGAGTAACCAACTCCTTTGCTAGCATGAAAACTGTAAAGACAACTGAGAATAGTATAATATCCTCTGATAAAAAGAACTAAACACCTAATGGCTATTAAACATTCCTATAAAAATAAAACTTATTTCCCTGTATGGTAGAAGGAGTTTAATATGT--GTCAAATAAAAACTAAACAAAAATATAAAAGGTTGAGTTAT---AAGTAAATATAAGAAATTTAAAC----TAGGAAATAAAAGACTATGGAAGCTTTTAGTATTTCCATCTAAAATCTCAGAAATACATAAAAACAAATTAACTGCCAACAAAACCCTACCACCAAGTAGACTTTATCTACCTTTAAGGACCATTTGCAATCAGCAAATACAGAACACATTTATACAAAGTTCACATTTTAAATAACAACCTGCTCTC-TAATTCTGGTATACCTTTGAAAATAGCATACAAATTAAAAAGAAAAAggaaaaaaaaaacttggtc----atagtcaagtttgataaatactgcagttgattg-----------------agcaaagcagtacatttttagtttaaaaaattaaaaagatgtaactatgaa--------atatggttgttttcttct s mm3.chr3 56274670 888 + 160674399 TTCCTAGTTCCTACA--GGTCTCCTGCAT--------------GTATTTCTAGGAACAC---CACAAATTAGTTCAGACTGAGAGAATGAAC--GTGTGACAAAAACAC-CACAAGGTGTTAAAA----GACATCAC-----ACAGAAGTCAGACATGAAGAT---AAGAAATTACA------GGAAAGAAAAAGGCACAGAAAGTCAGGAGAA---GGTGAA--AGAACATTACAGAAGTCACACTGCACAGC-CCGGGAAA-GGAGAACAGCTA------CTGACATGGTTTCCAGGGG--------AAGCATCTACTCTGCCCTACCTTGCGAGGCTGGAAATCATACTTCACACAGTGCTGGAAACCTTTTCCTTTGGACTTCAGAGATGTGACTATCAAACAGTTGCCAACAAAATGAGCAGAGTAGCCCACTCCTTTGCTAGTACGAAAACTGTATTAATAA-----AATAATACAG-AAACTCTGGTTAAATGAAATATA---CCAACACGTACTAAAACCTTATACAA----TAAACTGAATTTTCAGTATAGTCATAGT----TAACACATTGGCCAAATAGAAACAAAA-------ACATAAGTTTTA-TAATAACAAAAAAAAGTAAGGGATTTAACC----CAAGAAATAGTAGGCTTTGGAAACTCtttatatttaaatttaaaatataataGACAT---TAAACAAATTAATGATCAAAA-----TGTCTACTGGGCAGACTGTATATG-----AAGGACCATCGCCACTTCACCCGCTCAAAACTCATTTCAACAAAGTTCATGGTGTCAGT-ACAACTTGGTCTCTTAAATTT------------ACAATA------AACTTAA----AAACTATAAAAAGAAAACCTTACCAAGAAGAGCTAATTTTTAT-AATAATGTGATTG---------------------ATCAAATAAGTACATAT---ATTTTAATCTAAATAAGAACATGCTTACTAAACAATCTCATATAATTATAATGTTCT s rn2.chr2 140623942 896 + 246339213 TTCCTAGTTCCTACA--GGCCTGCTCCAT--------------GTACTTCCAGGAAGAATGGCACAAATTATGTCAGACTGAGAGAATGAACAAGTGTGACAAAA-CAA-CACAAGAGGTCAAAA----GTCATGGC-----ACAGAAGTCAGACGTGAAGAT---AAGAATTTA-------------GAGAAAGGCACTGAAAGTCAGGAGAA---GGTGAA--AGAATATTGCAGAAGTCATGCTGCACAGTGCTGGGAAATGGTGAATGGTGA------CTAACATGATTTCCAAGGG--------AAGCAGCTACTCTGCCCTACCTTGCGAGGCTGGAAATCATACTTTACACAGTGCTGGAAACCTTTTCCTTTGGACTTCAGAGATGTGACTATCAAACAGTTGCCAACAAAATGAGCAGAGTAGCCAACTCCTTTGCTAGTACGAAAACTGTATTAACAA-----AAGAATATAA-AAACTCTGGTTAAAAGAAATATA---TTAACACCTACTAAAACCTTATATAA----TAAGCTTAATTCTCTGTATAGTCAGAGG----TAACACATTGGCCAAATACAAGCTAAA-------ACATAAGGTTTA-CAAT---AAAAAAAAGTAAGGAATTTAACTTAAGTAAGACATAGTAGGCTATGAAAA--CTTTATATTTAAATGTAAAATACAACAGATAT---TAAACAAATTAATGATCAAAA-----TGTCTCCTGGTCAGACTGCATATG-----AAGGACTATCTCCACTTTGCCCATTCAAAATTCATTTCAACATAGTTCATGTTATCAATAACAACTTGGTTTC-CAAGTTT------------ACAATA---------------------CTTATCAAAAAGATCTTACCAAAAAGAGCTGATTTTTAT-AATAATGCGATTGATCATATCCATCTATTTATCTATCatatatatacatgt---atatatacacatatatGCACATGACTATTAAACAGCCTTATATGGTTACAATTTCTT a score=92126.000000 s hg15.chr22 14501225 1334 + 49476972 TTCTTATCAATTTGCTATAAATGTTTAATTTAGCCACCTTCTAGTGACACTTTTACTACATTATTAAACAAAAAGTACCCCATTGAACTTAACATACTACAATACATTCAGATGTGAACAGTTAGAAGTGTTTTGGTGGCTACTGGTTCTTCCTTAGTATAATATTTAAAGTTTAATTTCTCTGTTAAAA--AGCAAGACAGAGGTATTTTT-CTGACATTTATTCTCTTTTCTCATATCCTTCCATCATCAAGCTCTTTTGAAAGGAAATACTAGAAATTACAAAAAGTGAAAAATTTTGTGTTATTAATATTATTACTGAGA--AAAAGATAGGAGAATGAAGAAGCTTTATATAATGGCAATGTCAAAATATGAACTTCTATGGTACGATCACCCTCACTGTCACTTTTACATTTCAGTGTTGATGAATTATGTACTAGTAAACTACTATGCATGTAATTTTGGCTCATTCTCTAAACTGCACTCCATAGAGTAGCAGGCAATTTCC------AAAAAAAAAAAAAAATTAAGAGCTTAA---ACTCAGATATAAGAATTGAAGGATCATATGATGTTCTATAAAACATG--------------T-----GTACACATAAGTCTATATTAATAAATTCCTAT----------TAAGTAACTCTAGA-ATTTATAGAAATGCTACTATTAATATATCTGTATTAAAAAGGTATTTTAAGAAACAGATGTGTGAATCTCATTTTTCACCAAGTTAGCCATCGGTCCCCAATACAGGGGTGCTAAGTCATTATAAAAAAAGATACTTGCCACCCTGAAGGTAATTACGTATGATTTTTAATATATTTTCTCAGAAAATCAAATTTTGGGAAATATTTAAATTCAAAGCATTCTTTTTGCGATTTTGCATTCTT-TTAA-CCCATTTTTCATTCCATTCTTTCTCATTTAATGTCTTGTTACATAAATTTTAAACATAATTAAATGCGTGAGTCAAAATGTTTAAGAGTATTCTCTGGTATCTGAACTACTTTGCAGGATCAGATATAATACTGTGGAGAGTAATATCAGCACTTTTATAATTATGAAAATGCTTTTATGTCAGAAGATACTTAAGCTGAAGATTCATGGGTTACAAAAAATAAACA--TTTCAAACTTTAAACTTATTTTCT-GGAATGATACTTGCTCTGAAATAAT-ATTCAAAACACTTTTCC-GAAATGCATCTAGCCACACAGGAGAATGAG---CATGCAAGGAGGTAGAGGGTCGGTGGTGAA-AAAAT-TATAGATTTCAAAGTTATTGTTTGAAATAACCCA-AACAAGCAAAACATTAGTATTTTTATCTTGAAATTCTTGGTGAATTTTATGTTCTAGCCCATAATATAT s mm3.chr3 56278699 1160 + 160674399 TTTTTGTCAATTCATCACAAAT-----ATCCAACCATATTTTAGTGATA--------AAATTATTAACTTTAGAGTACATCTATATTTTTAACACATTATA--ACACTCAAAGATGGGAATTAAGTAGTTTGCTGGTACTCATTCAAACTTTC--AGTGAAGTATTTAGATTTTAATTTCTCTATTGTAAGTAGTTAAGCAGCATTTTCTTT-AGGACACGCATTCCCTTCTCTCATATCC-TCAGCTATAAGGTCCTCTGGAAAATAAGTGC-------------------------------------------TACTGAGAAGAAAAGA-----GAACTAAAAAACTTCACA-------TTTGACAGAAAAT--GCTT--------AACATGCCCTCACTGCTGCCGTC---TCTCAG-------GAACTACT-----ATAAACCACTGTGCAT---ATGCTGGGCACTCCTCGAAAAC-TATTCTGTAAAGTAGTAAGTACATTATATTAGAAAAACAAACAACAAACAAAAAACAAGACTTACTCAGCTAATAGGATTCAAAGATCATATGAGAGCCTACACAATATA--CTACCATATTGAT-----ACACACATAA----ATACTCACACACTTATAC--------------TAACCCCCAACATTGACAGTCGTGCAAGT--------------------------------------------TTAATCTCATTTTTAATCATGTTAGTTATTATTCATC------------CATAAACATGCTCAACACAAATACAAGCTACTTCGGAAGCAACCAGACATGATCTCAAA-----GTAGTAA-GAAACataatttt---aaatttttaatttaaa---------tttaaaatCT---ATTCTTGTTAACCCCGCTGTTTATTTCCTTCTTTC----TTGATATTATACTCTGAAAATTTAAA----AATTAAAGTCTTTATGTGGAATTATTAT-AAAATTCTATAGGTTCTG-ACTCTTTGTAAAAAGTACATACAATATTGT--ACAGTCAAATTAGCACTTTGATAATTGTAGAAATATTTTTATGTCAGAATAAATTTAGACTATACATGTATTTGTGAAAAAGAAAAAACAAATTTTAAAC--TGCACTTATTTTCTAGAAATAACTGCTGTTCTGGGGTCATGAGCCAAAACATTTTTCCTGAAGCATCTCTAACCACAGAGAATAGTTAATTACTTGCCAAGAAGTC-AGATTTGGTAATACTTGAAATACCAAGATTTCAATACTACTATTTCAAATAATACATAATGAGCAAAAAAAAAAAAT-----------CACTTTATATACATTTTACGTACTATTCCACAACGTGT s rn2.chr2 140627903 1140 + 246339213 ATGTTAGCAATTTATTATAAAT-----ATTTAACCACATC-------------------------ACCTTTAGAATACCTCTATGTATTTAACATATTAGA--GCACTCAGAGATGGAATTTCA-CAGTATGCTGGTACTCATTCACACTTTC--AGTTAAGTACACA-------ACCTCTCTATTAAAAGTAGTTAAGCAGCCTTTCTTTTCAGGACAC-------------TCATACCC-TCAGCTACAAAGTCCTTTGGGAAAGAAGTGC-------------------------------------------TACTGAGAAGAAAAGATGAGAAAATTAAAGAACTTCACA-------AATGACAGAAAA---ACTT--------AGCCCGCCATCACTGCTGCCTTC---TCTCAG-------GAACTACTTACT-ATAAACCACTATGCAT---ATTCTGGGCACTCCTCTAAAAC-TATTCTGTAAAGCAGTAGGTAGTTTATTTAAGAAAAACAAGCAACAAACAAAAAGCATGTCTTTTCCAACAAAAAGGATTCAAAGATCATATGATATCCTATACAATATATACTCTCATACTAATGGTACACACATACAA----ATATTCATACACTTATATAAGCTCCTATAAAATAACTCTAAACATTGAAAGTAATGCAAGT--------------------------------------------TTAATCTCATTTGTAATCATGTTAATTATCATTCATC------------CAAAACCATGCTCACCACAAAGACAAGCCACTTTGGAAGCAACCAGACATGATCCCAAA-----GTAGTAAAGaaatataatttt---aaaaatttaatgtaaa---------tttaaaatCT---ATTCTTGTTAACCCCACTGTTCATTTCCTTCTTTG----TTGATATTTTACTCTGAAAATTTTAA----AATTAAAGTCTTTGCATAAAATCATTAA-AGAATTCTCTAAGTTCTG-ACTATTTATAAACAGTAGATATAATATTGT--ACAGTCAAATTAGCACTTCGATAATTATGGAAATATTTTTATGACAGAATAAATTTAGACTACACATCTATTTGTCAAGAAGAAAAGACAATTTTTAAAC--TGCACTTATTTTCTAGGAATAACTGCTATTCTGGGAGCATTAGCCAAAACACTTCTACTGAAACATCTCTAACCACC-----TCTCTAAC--CCTGCCAGTAGATA-AAAGTTGGTACTAAC--AAAT-CCAAGATTTCAAGATTATTATTTCAAAAAATTCTCAATGAGCCAAAAACTAA--------------CACTTTATATACATTTTACATTCTATTCCACAATGTAT a score=69994.000000 s hg15.chr22 14502624 329 + 49476972 ACGGGGGTGGCGGCGGCGGCAGCGAGTTCGGTTGCGCGTGACGCACCGGGTGGGAGCGGAGACCAGGCCGGGAGCAGGCGCC------ACCGCCAGCG---------------------------------------------------------------------------------------------------ACCATGGGGAACATGTTGGCCGCCAGCTCGCCGCCCGCAGGG------------------------------------CCGCCACCTCCGCCCTCGCCGCCGGGCTTCACGCTGCCGCCGCTGAGAGGCGGCCTGGGCGCCGGCACCCCTAGGAGTCGAGGTTCGGAACGGACCCCCGGGGCTGCAACCGCCAGCGCCTCAGGGGCCGCCGAGGATGGGGCCTGCGGCTGCCTGCCCAACCCGGGCACATTCCAGGAGTGCCACCGGAGGTGT s mm3.chr7 120242368 468 - 134401573 ACAGCGGTGGCGGCGGCGGCAGCGGGTTCGGTTGCGCTTAGCGCACGGGGTAGGAGCGGAGCCCAGGCCGGGAAGAGGAGCCGCCGCGGCCGCCAGTGAGAGCCGAGTCCGCTTTGGGTGGGAAGGGCCTGGGGTTGCATCCGGGGG-TGTGCGTGTCGCCCC-GATCCCTGCCCTCTGACCTTTCCCCTCGCAGATACCATGGGGAACGTGTTGGCTGCCAGCTCTCCGCCCGCAGGGCCACCGCCGCCTCCTACGCCGTCCCTCGTGGGGCTCCCGCCGCCGCCTCCTTCGCCGCCAGGCTTCACTCTGCCGCCGCTCGGCGGCGGCCTGGGCACTGGGTCAAGCACTGGCCGTGGTTCGGAACGGACTCCCGGGGCTGCGGCCAGCGGCGCTGCGGCGGCCTCGGAAGATGGGAGCTGCGGATGCCTGCCCAACCCGGGGACGTTCGAGGAGTGCCACCGGAAGTGC s rn2.chr1 206201447 467 - 276301343 ACAGCGG---CGGCGGCGGCAGCGGGTTCGGTTGCGCATAGCGCACGGGGTAGGAGCGGAGCCCAGGCCGGGAACAGGCGCCGCAGCTGCCGCCAGTGAGAGCCCAGTCTGCGTTGGGTGGGAAGTGCCTGAGGTCGCATCCGGGGGGTGTGCGTGTGTCCCCTGACCCCTGGCCTCTGACCTTTCCCCTCGCAGATACCATGGGGAACGTGTTGGCTGCTAGCTCTCCGCCCGCAGGGCCACCGCCGCCTCCTACGCCGTCCCTCGTGGGGCTCCCGCCGCCGCCTCCTTCGCCGCCAGGCTTCACGCTGCCGCCACTTGGAGGTGGCCTGGGCACTGGGTCAAACGCTGGTCGCGGTTCGGAACGGACTCCCGGGGCCGCGGCGAGCGGCGCTGCGGCGTCCTCGAACGATGGGAACTGCGGCTGCCTGCCCAACCCGGGGACGTTCGAGGAGTGCCACCGGAAGTGC a score=64250.000000 s hg15.chr22 14502953 1333 + 49476972 AAGGAGCTGTTTCCCATTCAGATGGAGGGTGTCAAGCTCACAGTCAACAAAGGGTTGAGTAACCGTTTCCAGGTGAACCACACAGTAGCCCTCAGCGCAATCGGGGAGTCCAACTACCACTTCGGGGTCACGTATGTGGGGACAAAGCAGCTGAGTCCCACAGAGGCGTTCCCTGTACTGGTAGGTGACATGGACAACAGCGGCAGTCTCCACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAAGAATTCTCGAAGCCCACTACCTCCAGAGCATCAGGCCTTGCCTGGCCCTGGGCAGAGAGCTGGTCTACAACCGGCGGCCTGGGGACGAGGG----CACTGTCATGTCTCTAGCTGGGAAATACACATTGAACAACTGGTTGGCAACGTTAACGTTGAGCCAGGCGGGCATGCACGCAACATACTACCACAAAGCCAGTGACCAGTTGCAGGTGGGTGTGGATTTTCAGGCCAGCACAAGGATGCAGGATACCAGCGTCTCCTTCGGGTACCAGCTGGACCTGCCCAAGGCCAACCTCCTCTTCAAAGGCTCTGTGGATAGCAACTGGATCGTGGGTGCCACGCTGGAGAAGAAGCTCCAGCTCCTGCCCCTGACGCTGGCCCTTGGGGCCTTCCTGAATCACCGCAAGAACAAGTTCCAGTGTGGCTTTGGACTCACCATCGGCTGAGCCCTCCTGGCCCCCGCCTTCCACGCCCTTCCGATTCCACCTCCGCCTCCACCTCCCCCTGCCACAGAGGGGAGACCTGACCCCCCTCCCTTCCCTCCCCCCTCAGGGGTTGGGGGGGACATCGGAAAGGAGGGACCCCGCCACCCCAGCAGCTGAGGAGGGGATTCTGGAACCGAATGGTGCTTCGGGATTCTGAGTACCAGGGGCAGTGTGCCCAG-------TGGGCATGGGGTCCCAGGAGGGATTCCGGAAT-TGAGGGGCACGCAGGATTCTGAGCACT--------AGGGGCAGAGGCGGCCAGACAACCTCAGGGAGGAGTGTCCTGGCGTCCCCATCCTCCAAAGGGCCTAGGCCCGCCCCGAGGGGGCAGCGAGAGGAGCTTCCCCATCCCGGGTCAGTCCACCCTGCCCCGCCCACTTTCCCAC--CTCCTCGGTATAAATCAAGTTTATAAGTTATGGAAGAACCAGGACATATAACAGAAAAAAAAAAAAAC-------AACAAAAAATATACGTGGGAAAAAAAAAAGA s mm3.chr8 96613744 1225 - 128923138 AAATAGCTCTTTCTGGTTCTGATGGAAGGTGTCAAACTTACAGTCAACAAAGGGTTGAG-AACCATTTC-AACTGACCCACACAGTAGCCCTCGGCACCATTGGGGAGTCCAACTACCACTTCGGGGTCACATATGTGGGGACGAAGTAGCTGAGTCCCACAGAGACGTTGTCTGTGCTGGTGGATGACATGGACAATAGTGGCAGCCTCAATGCACAGGTCACCCACCAGCTGAGTCCAGGTCTCACATCCAAAAGGGCCATCCAGACCCAGCAGTCCAAGTTCGTGAACTGGCAGGTGGATGGCGGGTATGGTGGCT-------------GCTGTTACCTTGGGCAACCCAGATGTCTTGGTGGATTCCGGAATCCTCCTGGCCTACTACCTCCAGACCATCATACCTTGCCTGGCCCTAGGTGGAGAGTGCGTCTACCACAGGCCGCCTGGAGAGGAGGGAGGGCACTGTCATGTCTCTAGCTGGGAAATACACACTGAACAACTGGTTGGCTACAGCAATGCTGGACCAGGCTGGCAGGCATGCGACATATTATCACAAAGCCAGTGACCAGCTGCAGGTTGGTGTGGAGTTTGAGGCCAGCACCAGGATGCAGGACACCAGTGCCTCGTTTGGGTATTAGCTGGATCTGTCCAAGGTCTACTTCCTCTTCAAAGGCACTGTGAACAGTAACTGGATCGTGGGCACCACGCTGAAGAAGAAACTTCCGCCCTTGCCCCTGACACTGTCCCTCTGCGCCTTCCTGAATCGCTGCAAGAATAAGTTCCTGTGTGGCTTCGGCCTCACCATCAGCTGAGCCCTCCTGTCCTTCCTCTGC------------AGGCCACCCCTGGGCCAGCTGCC------------------------CTCCCCTCCCCTCCCTCTCTCTT--GGGGTTGGGG----CAGTGGAAAGGAGCGAAC---CTACCCCA--------------------------------TGCCCGAGGATCCCCAGCACCAGGGGACAT-TGTCCAGGGGTCCCGGGTCCCGGGGTCCCAGAGGGAGTTCTGGGATCTGAAGGGCATTC--GATTGTGAGCACCCAGGCAAGAGGCACAGAGGTGGCTGTACAGTCTCAGGAAGGAAAGACTTGATGTCCCCGTCCTCC---------------------TGAGGGCAGC-AAAGGAGCG--------CCGGGCCG-----------CCTGTCACTTTTTCCTCCACCCCTCCATAGAAATCATGTTTATAAGTTATGGAA-AACCGGGACATTTTACAGGAAAAAAAAAACACCTTaaaaaacaaaaaatacacatagagaaaaaaaaaaa a score=111564.000000 s hg15.chr22 14504286 869 + 49476972 TACACCATGCTTATCTAAGGCTTTTAGTACCTCCTGTCATAGTTGCATATATGCCAGATTGAGGGGCACAGAACTAGGGGAATTTGATAAAATGCTCATTATACAGAACTGTAATACCTATTGTGGCATTTTAATTATGTAAAAGCTTAATGAAATACTACATAAAAAGATACTGTTTATTTTTCTGATAGATTTCATA------GCACTCCGTGGTACTGAG-ATTTTCTAAAATT-----TAGAAAACA---ACATTAGTAATTATATTTGTCTACTATAGTAAGTATATTT--TTCTTCTTTCACTCTTCAGGTTTTCCATTAATATAAAAAGTAAAATTTCCATACATTTCCATTTATTT---TAAATCAAAGTAGTGTCAACAAATCTACATTACCTATAGAATATAAAGAGAAGTATGTGAAACTTTATAAACTTTTAAGTTATACTTCCCTAACAATCAACCCCATACCTGCTCTCATGTCATCTACAGCACTCATTTTCAGCAATACTTGTTTAATTAGCCCAACTTCTGTGCTAGTCTGTACATTCCAAACACTTTTTCATAGAATGGCTGTAAACATGCTCCCTATTTCTGCTTGACATGTTACATCACAGTGCTCTAAAAGCTCTGTCATGCGTATTATACTCTCAGCATCCTGGATAATAGAGTTCATCTCCAGTTCAAATTCTCCACCAACCAGCTGAAAGTAAACAGAAAGAAACAAT----------AGTGTTAACATGGGAGGTTACTGATAACAGTAGAATAAAATA---------------ATAACAAGAGTTCAAATCTACTACTCTAAAAAAGTTTCAAGGCTTTTGGTGTAAAATTACTTTTTATAAAAAGTATAAGAGCTACAGATAAATGACAGGCATTGTAAGCATTGAA s mm3.chr3 56280224 844 + 160674399 TCCTCTGAG-------AAGACTTATCCTGCTGATTCTGCAGGCTCCAGGTGCAGCAGCTTGGGAGGCTTGGAGCTGGAGGAACTTGGTGAATAGCT------------CTGAACTACATATTGTAATATTTTAAATGTGTTGTAGTTCAGTTATATGTAACAT-AAAAGATACTGTTTGTTTTTCTGATA-ATTTCCTATTGTTTTTACTCCATAGTACTAAGAATTTTCTAAAACT-----TGGGGGAGGGGTTGTCTAGTATTTATGTTTGCGCAGCACAAT-------TTTGTTTTCTCTTCTTGTCTACACA-TTTACATTAATATAAAAA-------TGTCATATATTCTTACTTATTTATACAAATCAAGGCAATTTCTACAAATCTGT-TTTCATGTAGACTATCA--AGAAGTCCCTGAAACCCTGTAACCGT--AA--AGCACTTTGTTATCAGGTCA-CACTTACCTGCTATCATGTCATCTACTGCACTCATTTTCAGCAACACTTGCTCAATTAGCCCCACTTCTGTGCTGGTCTGTAAATTCCGAACACTCTTCCGTAGGATGGCTGTAAACATGCTCCATATTTCTGCTTGGCATGTCACATCACAGTGCTCCAAAAGCTCTGTCATACATGTTATGCTCTCAGCATCCTGGATAATAAAGTTCATCTCCAAATCAAATTCCCCACCAACCAGCTGGAAGTAAACAGGGAAGAAGAAAAACTGTAAGCAGAACTGACATGGGAGGCCATTTCCAACACCAGCAGAGAATAATGCCATACCATCGAGTATCAAGGAAGCGCGGACACTAATA------ATTTTCCAAGTCATTTTCATAAAGCAAATTTTGGTCAAA-GTTTAAGAGTTAATGATAA--------------AAGGAATGAA s rn2.chr2 140629416 845 + 246339213 TACTCTGAA-------AAGGTATGCCCTGCTGATTCTTTAGGACTCAAGTGCAGCAGGTGGGGAGGCTTGGAGCTAGATGGATGTGGCAAATGGCT------------CTGAACTACATATTGTAATATTTTAAATGTGCTGTAGTTCAGTTATAGGTAACAT-AAAAGATAATGTTTGTTT--CTAATA-ATGTTCTACTGTACTTACTCCATAGTACTAAGGATTTTCTAAAACTGGGAGTGGGTGGGTGGTAATCCAGTAATTGTGTTTGTACAACACAAT-------TTT--TTTCTCTTCTCGTCTACACA-TTTACATTAACATAAAAGA-ATATTTGTCATATATTCCTATTGATTTATTTAAATCAAGGCAATTTCCACAAATGTGT-TTTCATGTAGAATATGA--AGAAGTGTGCAAAGCTCCCTAGCCATCTAA--CGCCCTTGTTTACCAGGCCA-TGCATACCTGCTATCATGTCGTCTACCGCACTCATTTTCAGCAACACTTGCTCAATCAGCCCCACTTCCGTGCTGGTCTGTAAATTCCGCACACTCTTCCGTAGGATGGCTGTGAACATGCTCCATATTTCTGCTTGGCATGTTACATCACAGTGCTCCAAAAGCTCTGTCATGCATGTTATGCTCTCAGCATCCTGGATAATAAAGTTCATCTCCAAATCAAATTCCCCACCAACCAGCTGAAAGTAAACAGGAAAAAAAAAA----GTAAGCAGAATTGACATGGGAGGCCATTTCCAACACCAACACAGAATA---TCATACAGTCGAGTATCAAGAAAGCATGGACACTAATC------ATTTTCTAAGTCATTTTCATAAAGCAAATTTTGGTCAAA--TTTAAGTGTTACAGATAA--------------AAGAAATGAA a score=50709.000000 s hg15.chr22 14506181 558 + 49476972 AGAAATCTAATTTTCACATAAATGGGAAAGGGTGAT------TTcaaatctagtaaa----tcagagcaaactacagcatgtgattcct-------ggatgggattcaggaaaaattcctaaaaagagggtttggcctttaaaagtgataatcaacagaaaatatagaatttactaaggataaattttaagacatgaaattcattttcctttttgatattactaGTCTTACAGATAAAGAGATGT--------------AACTGGGGCATAATCTCCATATATAGAAGATGAAGAAACATGAAACTGAT------ACAACTTACAATAAATGTTGCAATAATGAAATGAATGTTAAAAATAAGTTGAAC--AGAAATATGCAAGGTCTTGTAATGCTTTTTTTTTTAAGCACAAATGTGAATTGGGTAAAGAAAGCTGATTTAACAGCAACACATTTGACTTCAATATTATGGCAAATGAGTCCAAAGTCATACTGCCCCTCCCGTT----TGGTattttaa------------------------gtacagtaatagacaaatacacacagaataaaataacataataatactctgttactctctgttgatcgaatcccataag s mm3.chr3 56281068 556 + 160674399 AGAGGTTTAATTTTTACAAAGGTGG--AAGGAAAATAGTAAATTCAAGTCTAGAGAAAGACACA---CACACACCATCAAATAATTGTGGGAGTGAGGAGGGGAATCAGGACAAACTCC----------------CTTTTTAAAAG----ATCAGAAGAAGAGATAGAGTA-TCTAAGGATAAATATTAAAACA--AAATTCACTTTTA-TTTT-ATCTTATTGAACTTATAGGGGAAAAAAAGAGATGTAATAAAGAGGAGCTTGGTTCAATTTCC--ACATGAAAAATGAAGAAATATGAAACTGGTGCAAGAACAACTTACAATAAGTGTTGAAAAATTAAAAAGAATG---------ATTTGTACAGAGAAATATGTAAGGCCTTATAA------TTGCCTAAACCATAAAATTAAAAAGGGGA---GAAGTAGATTTACTGTCAATAT-TATGAC-------TTGTGGCAAATAATT--CAAGT--TATCACTGTTTCCATCAACATGCTACTTTGAAAACCATTACCAGCCCCACTAAATGCATAGTACTGGA--AACACACAGAGAATAAAATATTATGAC-ATGT----TTATTCTCTGTTGATCAAATCACATGAA s rn2.chr2 140630261 529 + 246339213 AGA-GTCTAGTTTTTACAAAGGTGG--AAGGAAAAC----------AGTCTAGAGAA----ACA---CACACTATAGGAGATAATAATGGGGGTGGGGAGGGCAATCAGGACAAATGGC----------------ATTTTAAAAAT----CTC---AGAAGAGATACAGTAGTCTAAGGATAAATATTAGAACA--AAATCCACTTTCATTTTT-ATCTTATTGAACTTGTAGAGGAAAAAGAGA--------------CAGTTTGGTTCAATTTCC--ACATGGAAAATGAAGAAATATGAAACTGATGCAAGAACAACTTACAATAAGTGTTAAAACATT-AAAAGAATG---------ATTTGTACAGAGAAATATGTAAGGCCTTATAA------TCTTCTAAACCATAAAATTAAAAAGGGGA---GAAGTAGATTTACTGTCAACAT-TATGAC-------TTGCGGGAAATAATTAAAAAAT--TACTACTGTTTCAATCAACAAGCTACTATGAAAATCATTACCAGCCCCACTACATGCATAGCAACAGATGACCACAAAGAGGATAAAGTATTATGGT-GTAC----TTATTCTCTGTTGATCAAATCACATGAA a score=58939.000000 s hg15.chr22 14506743 729 + 49476972 attatattcggttataagcatcattcttaaaaaagaacactgtcaaactggaTATCCTTTTGGTCTAAAGAATGATAAGATTTAGGAATAAAATAATAAT----------------CATATACAACACCTCACAAATTCAAAGTAATTAATTCCtttgttcattcaataaat-aatttattaaggtctagaagttactgttctgggaactagaatatatgaacatccaagataaagaccatgcact-aacagtgctaaattctagGAACAAAGATTTATATGTATGTATGCATACACTACTTTATTCCAAAAAAACACTGAAGGTGGCTACAAGTTA--------------------------------------------------------------------TGTAAAGCATGAAGGAAGGCATAAAATATGAGTAGATGAGAAAAGAGGAAGCAAAGGAAAACAAGATTAGGAACAGACAGGGAGTAGAATTAGGATCAAGAAGTAGAATTAATTTCCTATCAC-TGAAAGGTATTCGCAAATACGGACAGGTCACCACAGAATATGATATAAATAAGATAAATAGTAACAATACCACCACCTAACCTTACATGGCGTTTAGTCCTGTTTTAAAGGTTTTACATCCATTATgacactattcttatcttcattttacagagaaggcatcataggcacagagttataagtatgttgaagaatgttacaaaaccggtaagagacccaggatccaagcacaagacgtctgtcttcGTGCAAGTTCATATAAACATTACAATCTCATTT-AAGAATAT s mm3.chr3 56282209 656 + 160674399 GTTACATTCAGCTAGAAACATTATTCTTATTGTATAATGATA--AAAATGAATATTCTTTTAGTCTACAGAATAA-AAGATTTAGGAA-AAAATACTTGTTT--------------TTTTTTAAAAACTTGGTATATTTGAAAAT----ATTCATTTGTTCATTTAGTAAGC-TGTTTTATGATAACTA-----------TTTTGGAACTATTAAATACTAATAGACAAGAAAAAGTTCACACACA-AAGAATGGTAAATTCCAGGAAGAGGTATAAATATGCAT------ATAAACTATCTTATTT---AAAACCAGCAA----GCCCATAAAATA---------------------------------------------------------------------ATAAAGCATAAAGGCTGCTTTAAAATAAGAGTAACT--GTAAGGTGAAAGCAAAGGAAATCAA-ACT--GAAAAGACAGGAAGTAAAAC-----TCAAGAAAAA-----CATTTCCTACTACTTGGA--GGATTCCCAAATCTAGACA------AACAG-------CATTAACAGGGCAAATGATGACAGCACCACCACCTCACCTAGCACGGCA-TCAGAACTA-CTTTACTGCTTTAAATCGTTTAAGAGTCTATTATTGTATTTACTTTAATGAAAAAGAATCTTAGGAACAGAGTTAAAAA--TCTTGAAGATATTCATTG----GGTGGGGGATCCAAGGTCCAACTGTGAGAAGACTGTCTATATGAAAGTTTATATAA-----AAAATATCATTT-AGGAATAT s rn2.chr2 140631291 740 + 246339213 ATGACATTCAGCTAGAAACATTATTCTTATCGTACAGTAAT---AAAATGAATATCCTTTAAGTTCACAGAATGA-AAGATTTA-TAA-AAAATAACTACTTCAGTTAGTGATATATTTGATATATACTTGGTATATTTGAAAATATTCATTCATTTGTTCATTCAATAAGCACTTTTTGTGATACCTA----------TTTTTAGAACTATT--ATATTGGTGGAAAAGAAAAAGTTCACAAACCTAACAAAGGTAAATTCCAGGAAGAGATGTGTACATGTAT------ATAGTCTATTTTATTC----AAACCAGTAA----GCCCATAAAACACTAATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcgcgcgcACATAAAAATATATAAAGCATAAAGGCTGGTTTAAAATAAGGGTAACT--TTAAAGTGAAAGCCAAGGGAATCAA-ATTGGGAACAGACAGGAAATAACAC-----TAGAGAAACA-----CACTTCCTACAAC-TGGA--GCATTCCC-AATCTAAACA------CACAG-------TATTAACAAGGCAAATGATCTTAGCACCACTACCTCACCTAGCATGGCA-TCAGTACTA-CTTAACTGCTTTATGTCTTCTAAAAGTCTATCATCATATTTACTTCAGTGAAAAAGAATCTGAGGTACAAAGTTAAAAA---CTTGAAGACTGTCATTG----GATTGGGGCTCCAAGATCCA------AGAAGACCACGTATATGAGAGtttatataaaaaataaaatatCATTTGGGGAATAT a score=4135.000000 s hg15.chr22 14514177 31 + 49476972 ttattccttactacacctatctattgaatgt s mm3.chr3 56381138 31 + 160674399 TCATTCAGTATTGTGCAGGTCTATTGAGTAT s rn2.chr2 140728523 31 + 246339213 TCATTCAGTGTCGTGCAGATCTATTGCGTAT a score=3827.000000 s hg15.chr22 14514208 28 + 49476972 attttgcaagccatgtgtagtttcaagg s mm3.chr3 56381499 28 + 160674399 ATTCTGCCAACCATGGATGGTTCTAAAG s rn2.chr2 140728869 28 + 246339213 ATTCTGGCCACCATGGACAGGTCTAAAG a score=2359.000000 s hg15.chr22 14514236 110 + 49476972 tacaggaaatgtagcggtaaatgaaacaaagtccctgtcctcat---atagcttatgttctaatacaggtca--------cagacaataaactagtaaaatgtatataaataatatgattt s mm3.chr3 56381527 115 + 160674399 AAAAGGAGATGCAACAGGGAAT---ACAGAGTCCCCATCCTTATGGGAAAGGTCACCAAGTTGTAGAGTTCAGCACCTTGCAGACAGTGAACTGATAAAATCTACATGAATACTAT---TT a score=59428.000000 s hg15.chr22 14514346 733 + 49476972 cagaaaatgataCTTTTTTATGGTATTTATTTTTATGAAAAAAATATAGTCTTGTAGTAATTTGTTATACAATTTTTTCCTGACTACCTTAGCACTACTTGAAGGCAGGGACTATAGCTT----ATAAATAAACTCTGCAGCAATAAGCTATGCTCATTGATT----GATACATGGTAAATACTT-------GATAAATGTCTCAATTAA--GGAAAGAAAGGAGGAAATAACTTAAAGGTAAAAAT---------TCAATACATTCAGTAGTTTGATACAGATTACTTACATTACAAGGCAATGTCACATATTAAAGGAAGAAAAACAAAAGGTTTTAAAGTCAGAATAAAAT-CATTCCTCTAAAGGACTGTTAAATTCCCTAAAACATGATTTTGGGGGAATAATAAGGTCCTCAAAACTAGCATTCAAAGTATTAAACCATCATTGTTGTGttaagtaaattatttggcctcttggagtcttgattttcttaccaatgaaataggaatgaGAGCATAGGAATGAACAGCTCTCATTATAGAAAGGGGTTGTAAGCACAAATGAGATAAATTATGATCCTTTGAAAAGTACAAAGTATTACAGAGAAAGCAATAGCATTAATTCTGGCAGCAGTCTGGAATGGAGCAGTAATTCCAGTCATCTGGAAATACAGGCAG---TAGTGAGTCATGGCTACAGACTCAGAGCAGGGAACTGGTTTGGATAAAGTGTGTG-ACAAGTTGTGGGGGATATTAAAAGG s mm3.chr3 56381642 630 + 160674399 CAGAGGATTATAACTTTGTGT-GCATTCATGGATAGAAACTGACAGTGGTGGTGTAGTCACTTGTTAGACATTTTACACTTGGTT------------------------GACTACACCTTTCTAACAAGTAAAGTGTTTAACAGTATCTTAAGCTCAG--ACTCTAACATACAAGCTTGAATCTCTAAAGAAGATAAACAGCTCTATTGA--AGAAAAAAAGGTGAAAGAAGGTAAAAAATAGAAATGTCAACAACTCAAAACTCTCAACAATTTGATATAAATTCCTTGCACTAC-AGGTGAGATTAACTATTTTAAAAAAA--------CAGTTCTAATATGAGAATAAAAAACATTCT----------------GTCCCTTTACACATGCATATTAAG---GATTGAAATCCTCAAAGTTGG----CAGAGT----AACTATAAGTGTTTGGT-------------TGGTATCTTTGGATCTCAGTTTTCTTATTCATGAAGTAAGAGTG-GAGTATA--------------------------------ATAAACTTAGATACGATC-------ACACTTTGTAAAGCACAAAGTGTCACAGAG--AGCAGTGAC--TAACTCTGGCACT--CCTGAAGGGAAGCAGTGATCCCAATCACCTAGAACTGAAGGCAGGGTCAAAAATTCAGGGCTATAGACTCCAAAC-------TGGTTTTGA---AATATGGGTACATGATGTCAGGGCAATGAAAAGG s rn2.chr2 140729552 647 + 246339213 CAGAGGATGATAACTTTGTGT-GCATTCGCGGATATAAACTGACAGTGGTGGTGTAGTCACTTGTTAGACATTTTACACTTGGTT------------------------GGCTACACCTTTCTGACAAGTAATGTTTTTAACAATATCTTGAGCTCAGTGACTCTAACGTACAAGCCCGAATCTTCGAAAGAGAAAAACAGCCATATTGAGAAAAAAAAAAGGAGAAAGAATTTAAATAATAGAAATGTTAACAACTCAAAAATCTCAACAATTTGGTATAAATTCCTTGCACTAC-AGGTGAGATTAACTATTAAAAAAAAAAA---AAACAGTTCTAGTACAAGAATAAAAA-CATTCC----------------GTTCCTTTACATGTGCATATTAAGAAGGATTGAAATCCTCAAAGTTGG----CAGAGC----AATCCTCATTGTGTGGT-----------------ATCTTTGGATCTCAGGTTTTTTATTCATGAGGTAAGAATG-GAGTATA--------------------------------ATAAACTTAGATGCGATC-------ACACTGTGTAAAGTACAAAATGTCATGGAG--AGCAGTGAC--TAACTCTGGCACT--CGCAAAGTGAAGCGGTGACCCCAATCGCCTAGAGCTGAAGGCGGGGTGAAAAATGCACGACTTTGAACTCCAAACAGGAATCTGGTTTTGATGAAACATGGCTACATGACATCGGGGCTAAGAAAAGG a score=247247.000000 s hg15.chr22 14515397 2271 + 49476972 GAGCTAGGCAGGTTCCACACCCAGAGCTAGTGGTCAGGAATCAAATGGCAAGGAATCAAATCTAGTCATACAAGCCACAGTCGGGTCAAACCT-----------------------------------------GAAAAGACAGTTGCAGTGACCATGGATCCTCAAGAACAGAATAGGAAGGCAATATAAAGTTTGGTAAACAGTCAGGAATCTGGAAATGTGATGAACAAAAAGAAGGATAATGTAAATGAGAGGCCAAATTTGAGATCTTCAAAAATGCAGCAAGGCAGTTTTGTGCATCAGCTCCAGTGTATGTATAAGGATCCTT-TGAAGGAAAGCATTCA-CTCTTGAGGAGCAGGTGCTCAGGATTACATGATTGAGGTAAGGGAATGTAGGTGGAGCCGAACCAACACTTTCTCCTCAAGAAAATTCTGGCAATAAATATCTTAGCCAGTTTTTAGAAGAATCTTTCCAGTCATTCATTTTCTAATTGGACAGCAAGATAAAGCTTCATCAAATCTCTAGACAAATTTCCCTTGGGACTTATGCCATGTTTTCATGATACCACAAAATATTTTGAAAGTAAAAAAACTCAATCGTCGATGTATGCACTCATTATTAGATCCTCAGTATGTATGGTTTCAGCTATGAATGAAAGCATTGCCTCCTTTCTTGT------TGACCTGAGTTTACTAAGTAATTGGCTAAAGTTAATTAATGAATCAATT---GTACTGTAGCAACATGCATGTGAA-----TGCTAGGCAAAACC----CTCCTGTGGATGGGAGAGAATTACTGTCTTTGGGTAACTGTTTGTTTGCTTTCTATCTCTACATTCAAAACTGACCAAGGAATGCCACTAGCTAGACATGTGTAGTGACTACCAGTGAACCTCAGGGAGGCTCACTCAGGACTGGCTACCCCCAGGATGGAGGGGTGGCATGCCAGTAAGGAACCTGGCCTTAGCAGCAAGTTGGTTT-----------TTTTTCTGCAAGTATCTTCTATTTCTTCTCCAACCAATTTTGTTCCCCTTGGTTCTTGGGAACCATTATA--CTGTTAGGTTAATGGATCATTGGT-TTATCCACCTGTACATTTCCTGAATTTTGGCCATTCAACCATGCATTCCTGGTGACTGGGTTTATAAGTATTAGTTTCCTAGGTCCAACACCACATTTGGATATCTCTTAACTATAAATTGGTGTAGTAACCGTGATATATCAGCATAGAGATGGCTCCATCCATTAAAAATAT-ATTGGTATTGGTGGTTTCAAAAAATTGTATATTTGTTACTGGCATCTAAAACAAATGAATGGCCAGATACAA----AATTGTACAGAACCCAGATTAGTATCTAATAAAGAATTAATAAAGAATATGAATTAATGTAGATATATCCATTTACATATTAATTGTTTTTTTCAAATTGGCCAAATTTTTCAAAACAATTACATATTAAAAACTGAGATATACGGAAATTCTAACTAATAGGTTTATAGTCATTCCTAGGGTAGGC---------ATTAACACTTCTTGGTAAGTTCTGTAAGTTAATTATAGTTTAACTTCCTAATTAATTAATTCTGTAAGTCAATTTATAGTTTAACTTCCCAGAGGCTTTGGTGTCTTTTTTTACCCTCACTTTAAAATACACACAATAGTATATAATATATCACATTTGGTCAACAGTTCAAATTTTTTTATTCT-------------------------------------------------------------------TTAAAGCATGTACAAAAAATATACTAGTTAGAATTCCTGTGAAAAATTCTAATACAGAGGAATTATATGGCTATGTTTGGAAAGATAA--TATT--TCTTTAAAAATGTGTTTTCTTTATGTTT-----TATGTTTGCAAT----------------------------------AAGGATTA-----------------------------------------------------------------TTT-------------------------------AAGTTTGATTGAAGAACTTCATGATTCTTATGTATTA---TTTTCTTGTATTGAGAAATAGTGGCCCATTGTTGGGCTGTATTTAAAATTAATGTGTATGAAACAAGAAATATTTAATTAGAGTTATTAATTTTCCACAAGTA----ATATGTGTACTTGACCTAAATCAGTATC-TTTTATCATATCAGCCTCACATACAACAAGAATAATAGCAAGGACAACAACAACAAATTTGAATGTTTCCTTTGTGCCTATGCT---CCTAACTATCATGTTATACTCATTCATATAAACCTAACAATTAATTTGAAGTTAGACACACAGGATTTACTCATCAGTATTAGAGCATTCGCTGTTATCCAGGAAGAAAACTATCCCTGGTGCTGAAACTGCTCTGTGTAGTCCATGCGGTTGAAGAATTAAA--AGTCTCTTTTAGACATTTCCTTTCATTGAAATTATGAATTGGATAAGTGTTCATACCTTAAAGGAAGTA s mm3.chr3 56382272 2191 + 160674399 GAAAATGGCAAGTTCAATGCTCAGATGCAATGGTTGGGAAGAGAAGGTCAA-AAATCTGAACTG---CTACGACAAAAAGTTAAGGAAACCCC------------------------------------AGAAAAAAAATATAGTTGAGGCAAAAAGAAATCCCC-AGAGCAGACCAGAAAGGCAGACTCAGGCTGGGCAAAC--------ACCTGGAAACATAATAAACAAAATGAAAGA-----TAAACAAGTGGCCAAGTTTGACAGCTTCTACAG-GCTGCCTGGGAATTTTGCACCTTATTTCCAGTGTTCTCATACTACTCTTTGGGAATCCAAGCCTAAAATCTCTGAAGGATAGATGCCCTAGAGCAT--------------------------------------------CTTCT-AGGAAAATCCTAGCAAT--------------------------------------------------AGTGGACAGCAAGACGAGGCTTTGTCTGATCTACAGACAAATGTCCCTT-GGCTTACTGCTGTGTTTTCATGATTATGGAAACTGTTTTGAAAGTAAAGAACCTAAATCAGGTGTTTATGCACTC---ATTAGATACTCCATATGTATGATTTCAGATGGGAATGAAAACATTTTCTCTGCTCTTGTGTCTTATGACCTAAATTTACTAACTTCCTCCCTCAAGTTAGTTGACAGATAAACTCAAGAAATGTATGTGTAAATGTTTCATGTAGCTGCTTGGCAAAACAAACACTCCTTTGTATGGGAACAAATTACTCTCACTAGGTAGC----TGTTTGATTTCTATTTCTAAATTTAAGACTGACTACCAGATG-TGCAAGCCAGTTGTTGGAAGGGATCACCCATGAACCCCAGT--------CTAAG---------CTTTCTTGATGGAGAAGTGGTAAGCTGGTAAA---------CTCAGGATCAAATTGGTTTGGGATATTGGCTTTGGTTTCCTGCATCTTGTACTTCTTTTCCAAAGAACTTTGTTCCCCTCAGTTCATGAGAACAGTTACAGGCTATTATGCTAATGGACCATTGGGAATATGTGCCTGCATATTTCCTAAATTTTGGCCATTTGACAGAGCATTTCTGGTAATTGGGTTTACAAATGTTAGCTTTCCAAGTTT-TTATTGCATTTAGACATCTGTTAAATTTAAATTGGCATAATAACTAAGTTGTGTTGATATAAAGATA----CTGCCATTAAAAATGTCATAGGGATTAGTTGCTTCAAAATGTTTTAGATTTGTTATTGGCATAT-TAATAAGTAAATGACCAAATGTAATATTAACTGTGCAGTATCAGAATTTGTTACTAATGAAGGATAGGT-------ATTAATTAATTAATACATGTTTATTTAAATGTTACAG--TTGTTTCACA-TGGCGAACTGTGTCAAAATAATTACACTTAAAAGGTGAAG--ATGAAGAAATTCTAGTGCATAGATTTTCAGTCATTC--AGGGTAGACAATTAACCAAGTAATCCTATTTGGTAATTTCTTTGTGCTAA------------------------TAATCCTACA-----------AGCTTAACTCCCTAAAGGTTTTAGTCTCTG--------CCCATTTAGAAACATGTACAA---CATGTAATATAAT-----TAGTTAACAGGCC--ACTGTTTTATTC--------------------------------------------------------------------TTAAGGCA--TATAAAAAGTCTAACTG--AAAACTCACATGAAAACTTTTAATTCACAGGCATCCTATAGCTATGTTCAGGAAGACAATTTATTAATCTTTAAA---GTGCTATTTTTATGTTTGTAAGCATTACTGAATTTGGAAGAACGTCAATTCATACTTTTCTTCATCCCAAGGACTGAACATAGGGCCTCACATGGGCCACATTCCCAGCCtatagcattggaaatgtaaatgagctaaatacctaataaaaaatggaaaagaaaaAAAAAGAAATAAGTTTAAAAAAAAGATTTC---TTTCATATGTTTTGTACTCTTCTAATATTGAGAAATGCTAGTCCAATCTTATGCTATATTTAAGCTTAGAATGTA-AAGCCTAGAAATATTTAACT--GATCATTAATTTTCCACATATATTGAGTATCTGTAATGAACTTACA----TATCTTTTTGTTACACCATCTTTCCATATAACATGAAGAGCA-----------------------GACTATTTCTCCTGTGACTGTGCC---CTTA---ATAATGTTATACTCATTCATATGAACCTAGCAATTAATTCGAAGTTAGACACCCACCACTTACTCATGTGTATTGTGATATTCACTATTAGCCAGGGATATTACTCTCCCTGGTGCTGAAAATG---------------GAAA-TGGAAAACTGAATCAGTTTCTCTAAGATGTAACCTGCCATTGAAACTACTCAGTGGATAAATATTCATACCTCAAGTAAAGTG s rn2.chr2 140730199 2255 + 246339213 GAAAATGGCAAGTTCAATGCTCAGACCCAGTGGTTGGAAAGCGAAGGACAA-AAATCGAAACT------AAGAGGAAAAGTTTAAGCAGCCTCCCTCCCTTCACCCCCACCTCCGTGCCCCCTCCCTCGGCCAAAAAGAAATAGTTGAGGCAAACAGGAATCCCC-AGAGCAGAGCAGAAAGGCAGACCCAGGCTGGGCAAAC--------ATCTGGGAACATACTAAACAAAACGAAAGA-----TAAACAAGAGGTCAAGTTCGACAGCTTCTGAAG-GCTATCTGGGAATTTTGCACCTTGTTTCCAGTGTACTCATATTGCTCTTTGGGAATCCAAGCCTGAA-TCTCGGAAGGAAAGACACCCTGAAGCATGTGTTTGCAGAAAGAAAATCT--GTATAGTC-AACCAG---GTTCTCCT-AGGAAAGTCCTGGCAAT--------------------------------------------------ACTGGACAGCAAGACAAATCATTGTTTGATCTATAGACAAATGTCCCTTAGGTTTAATGCTGTGTTTTCATGCTTCAGCAAAGTGTTTTGAAAGTAAAGAGCCTAAATCAGGTGTTTATGCACTC---ATTAGATACTCCATATGTATGATTTCAGATGGGAATGAAAACATTTTCTCTGCTCTTGTGCCTTATGACCTAAATTTACTAACTTACTCCCTCAAGTTAGTTGACAGATAAACTGAAGAAATGTATGTGTAAATGTTTTTT-----TGCTTGGCAAAACA----CTCCTTTGGATGGGAACAAATTACTCTCATTAGGTAGC----TGTTTGATTTCTATTTCTAAATTTGAGACTGACTACCAGATG-TGCAGGCCAGTTGTTTGA-GGGATCACCCGTGAATCTCAGT--------CTAAG---------CCGCCTTGATGGAGAAGTGGCATGCTGGTAAG---------CTCGGCATCACATTGGTCTGGGGTTTTGGTTTTGGTTTCCTGCATTTTGTACTTCTTTTCCAAAGAACTTTGCTGCCCTCTGTTCATGAGAAGCGTTACAGGCCATTATGCTAATGGACCATTGGGAATATGTGCCTGCATATTTCCGAAATTTTGGCCATTTGACAGAGCATTTCTGGTAATTGGGTTTACAAATGTTAGCTTTCCAAGTTT-TCATTGCATTTAGACATCTGTTAAATTTAAATTGGCATAATAACTAAGTCGTGTTGATATAAAGATA----CTGCCATTAAAAATGTCACAGGGATTGGGTGCTTCAAAATGTTTTGGATTTGTTATTGGCATAC-TAATAAGTAAATGAACAAATTCACTATTAATTGTGCTATATCAAGATTTGTTACTGATGAAGAATAGGT-----------ATTAATTAATACATGTTTATTTAAATGTTAGGGGTTTTTTTCACA-TGGCCAACTGTATCAAAATAATTACACTTGAAAGGTTAAG--ATGAGGAAATTCCACTGCATAGATTTTCAGTCGTTCTTAGGTTAGACAACTAGCCAAGTGATCCCATTGGGTAATTTCTTTGTGCTAA------------------------TAATCCTACA-----------AGCTTAACTCTCCAAAGGTCTTAGTCTCTG-------CCCCATTTAGAAACATGTATAA---CGTGTAATATAAC-----TAGTTAACAGACC--ACTGTTTTAGTCTTAAATTTTTAGTTCTGAGCCTAGACTTTAACGGCTGAGCCATATCTCCAGCCCCACGGTTTTATTCGTTAAGGCA--TAGAAAAAGTCTAACTGAAAAAAATCACATGAAGAGTTTTAATTCACAGGAATCCTATAGCTATGTTCAGGAAGACAAGTCATTATTCTTTAAA---GTGCTATTTTTATGTTTGTAAGTACTTCTGAACTTTGAAAAACTTCAAATCATACTTTTCTTCATCCCAAGGACTGAACATAGGGCTTCACACATGCCACATTCCCAGACT------------------------------CCT------------------------------------------TAAGATTTT---TTTTATATGTTTTGCACTCTTCTAATATTGAAAAATGCTGGTCCAATCTTATGTTATATTTAAGCTTAATATGTA-AAGCCTAGATATATTTAGCT--GATTATTAATATTCCACATATATTGGGTATCTGTGGTGAATTTACA----TATCTTTTTATTACATCATCTTTCCATGTAACAGGAAGGGCA-----------------------TAATATTTCTCGTGTGACTGTGCCCTTCTTA---ATAATGTTATATTCATTCATATGAACCTAGCAATTAATTTAAAGTTAGACACTTACCACTTACTCATGTATATTGTGATATTCGTTGTTAGCCAGCAATATTACTTTCCCTGGTGCTGAAAATG---------------GAAATTGAAAAAATGAATCAGTTTCTCTAAGATGTAACCTGCCATTGAAACTACTCATTGGATAAATGTTCATACCTCAAGTAAAGTA a score=9576.000000 s hg15.chr22 14517668 194 + 49476972 TTAAATTTCACATATGTTA------------------------------------------------ACATCTTA----ATTAATATAAGATTAATATTCTACTTATGACTATGTTATAAT-----------------ATTGAAAAATGAGTTTATGATGAGTTTCATTAGTTTCT---------------AGAGAAAACAGTGGTTTAAAAAATTTCAGTC--ATAAGACATTGAAGAGTCTATGACTGTTCCAGAAATCTGAAAACATA-TACCACTAA s mm3.chr3 56384694 269 + 160674399 TTAAATGTAACAAATTTTA-----AGAAAAAATAGACAAAACATTT-----TAAAGGAATGACTTTCACATGTTAGTATATTTATGTAAG-TAAATATGTTAGTATATGTTATGTTAGTATATTTATGTAGTATATTTACTAAATACTCTCCttatttttattattataatattttattGGAAAATTGTTTATAAGACATAGCAGTTTAAAACAAATTAGTAT-ATTGGACATCAAGAAATGTTTAAATGTTCAAGATGTCTGAAAACATATTACCACCAG s rn2.chr2 140732669 239 + 246339213 TTATATGTAGCAATGTTTACATTTAGAGAAAATAGAACAAATGGTCTAAAATAAAGTAATAAATCACATATGCTAGTATATTAATGTAAG-GCCACA-----------------------------------------ATTAAATATTGTGCTTGTTTTTATTATTATAACATTTTTGCTGGAAATGTTTGATAAGACATAGCAGCTGAAAACACATTAATATGACTGGATACCAAGAGATGTTTAAATGGTCAAGATGTCTGAAAACATATTACCACCAG a score=6555.000000 s hg15.chr22 14517862 261 + 49476972 TCAAAAGTTT--CTCCATTCATGTTGACTAGCATTTGCCTTAGGTGTCAGAATTAATGGATTTGTGTTAAAAATAAACACCTGAAATCTAATTCCCTAACTACATTATAACACACTTGATTTCAAGTTCTTAGCTTTTATTTAATGCTTCTAATGACTTTAAATTGTAGCAAAATGGGCTTCCCCCAAGAGCACTGCTTTGTTGATCCTGAGTTGGGGTCCTAAGCCAGAAGTTAACTATGCTTTCATATATTCTTGCAAGTA s mm3.chr3 56384963 240 + 160674399 CCAAATAGTTGACGCGGTTCATGTTCAGCAGTATTTA-TGTAGGTGTGAGAATTAAAGGATTTGTTTTAAATGTAAATACCTTCAATCTTATT--TTAGTTCCGCTGAAGCATACTTGATTACAAGTAGTTA------------------TAATGAC-TTAGAATACGACGAAATCATTTTTTCCATGGAGAATGGTTTCATTGATCCTGAATTGGGGTCAT-GTCCAGGGAACAGCTATGCTTCTCTCTATCCCCATAAAca a score=45186.000000 s hg15.chr22 14520102 441 + 49476972 cttggcatagcagatagaaaataattgtgatatgagacaggcctgaattggatttatggctctattgcatatttgttttgtgattttgggaaagtcatttaatctctccgaattttagtttctttagggat---taatagtaccttttccagggagctgttattaggatgagacaa--------------------cgACCAGAACATAGCAAGAATTCATTAGTGCTCTCACCACCCTTCCCCCATTGCAGCCCTCAGTACCTGAATGGCAATCGTGCATCTTCTCATCAGCCTGGAATTGCTTCCCCTTTCATCTTTGGCTCT-GCAGTATTCAGT-GTCACTAGTGAAATGTGTGAAATG----AATGAATCGACAACTG-ATGCTTAATACCTAATGAGACAAGTGAATGAATCCTTTTGTTCATTTTATGGCCAGAAAGATAGTGTAATTAAGTAATAACAACTGG s mm3.chr3 56385792 415 + 160674399 CTTGGTAAAGTCTGGAGAAGGTGACTGTAATGCAGGACAAACCTGATTTGTCTTCCTGGCTCTATTGCATATCAG-TCTGTGATTTGAAGAAAATC----AATCACTCTAAAT----GTTTCTCCAGAAAT---TACCAGCACCACTTTCAATGAATTGTTGTCATAATGAACTGAGTTCGTTTCATCTGCCTGGGTATCTAGGGCATAACAAGAAATTGTGACCCTTCTCTCCA-TCTGCTTCCACTGAAATCCTGGACACTTGAGAGACA------CCTACTCTC-----------AATGCTCC---------CGTTGGCCCTGGAAGTGCTTGGTAGGCACTAGGGATGCCTGTGAAGTG----AGTGAGTC----ACTGAATGCTTAACATCTAAGGACATAACTGAAACAATCTTTTT-TCCATTTTATATCCAGAAGG--------AATAAAAAATAGCAGTTGg s rn2.chr2 140740851 422 + 246339213 CTTGGTAAAGTCCAGAGACAGTGACTATAGTGCAGTCCAAGCCTGCTCTGTCTtcctggctctattgcatatcgg-tttgtgatttgaagaaaatc----aatcgctctcaatgttggtttctcctgagattaataatagcacctctttcaatgagttgttatcacaatggaatgagttcatTTCATCTGCCTGGTTATCTAGAAC---ACAAGAAATTGTGACCCTTCTCCCCA-CCTGCTTCCATTGCAGCCCTGGATACTT--GAGACA------CCTACTCTC-----------AATGCTCA---------TGTTGGCCCTGGCAGTGCCTGATAGACACTAGGGACACCTGTGAAGTGAATAAGTGAGTC----ACTGAATGCTTAACACCTAAGGGCACAGCTGAAACTATCTTTCTGTCTGTTTTATATTCACAAAA--------AATAAAAAATAGCAGCTGg a score=28987.000000 s hg15.chr22 14521579 258 + 49476972 CCCTTTTTTCTGTCTTCCTGG---CTCTCTAGTCCTAGGAAGTTAAAAAGAGTCAGAAAATCCCATCTTTTCTTCTATGAAGTTTGGGAGAAAAGTCAAGATAGGCT----ATAAAGTGTTGCACGTGATAATCCAAGCATCCTTCTACTGATAGTAGAGTCTCATTATCCTTCCTCAGATATATGCAGTGATGAAAATAGATAATGAGAATGCATGCATCCAAGTAACTCTTTGAGTGTATAAGGGCTGATTAAGTTGAAAGAA s mm3.chr3 56386495 240 + 160674399 CCCCTTATTCTTTATTCCCTG---CTCTCTAGTCAT-GGAAGTTGCAATGA-TAAGAGAGTCCCATCTTCGCTTCTCTGACGTCTGGG------GCCAAGACAGATTGATTATGAAGTGCTGAAC------------GCTTCACTGT--TGGTAGTAGAGTCCTACTCTCCTTTCTAAGATATCAGAACTGACAAAAGCTGAAGATGGGAAAATGCACAGTCAAGAGACTTTGGAGGAACACAAGGAGTCATTAAACTGAAAGAA s rn2.chr2 140742798 246 + 246339213 CTCCTTATTGCATATTCCCTGTGGCTCTCTAGTCAT-GGAAGCTGCAATGA-TAAGAGAGGCCCAGCTTCACTTCTCTGACATCTGGG------GCCAAGGCAGATT----ACGAAGTGTTGAACTTGATAGTGTCTGCGTCTCT----TGATAGCAGAGTCCTAGTCTCCTTTCTCAGACGT---AACTGACAAAAACTGAAGACAGGAAAATGTGCACTCAAGAGACTCTCGAAGAACACAAGGAGTCATTAAACTGAAGGAA a score=14616.000000 s hg15.chr22 14522127 100 + 49476972 TTGCAAAGTATCTACTAATCTAAAAAATGCACAGCCTCAGTTCTCAAAGAGTTTATGTTGTAGGATCACGTCAGTTCCATATATAATTTGTTTATCACAA s mm3.chr3 56386735 96 + 160674399 CTGCACATTGTCTACTGAAAC-AAAAATGCA-AATCTCACTTCT--AAGTGTTTATATACTAGCATTATGCTAATTTCATATATAGTTTCTTTTTCATGA s rn2.chr2 140743044 96 + 246339213 GTGCACATTGTCTACTGGAAC-GAAAATGCA-AATCTCACTTCT--AAGTGTTTATGTGCTAGCATTATGCCAGTTTCATATATAATTTCTTTTTCATGA a score=129519.000000 s hg15.chr22 14522442 1561 + 49476972 aacAA-GTATTTTAAAAGATCAAAATAAGGGTAAGAGAATATGGATATTTAGGCTTATGGTTACTTACATGGAACAGTTGAGGCCATTAAAAAATGTCTAAGACATAGGCAGTGGAAGGCTGAATTCAAGAAAAAG------TCTCAGAGCTGAGGAAACAAAGAACCT--ATGAGGTTAAGGTGTTAAATGAGCCAACCACATGAGTGTGAAAGGGAGGCCAAATGAGAAAATGATGTTGCTTGGGTGTAGAGGAAGTTCTGGAATAAATGTGGCAGTTGTTAGAAGACATTATAGTTAGAAGACATTATAGTTAGATGGATAGACAGTAAAGAAGGGGCTTTTGTATTAAAATAGAGGAATAGTGGTTGGGAATAGGAAATATGGAGCTAAAATTATGCCAACCCACTTCTATTAAATAAATTCTATGACACCTTAGCCTTTGGGAAAATGACTAGCCTTCAGTGGAGCACATGTCAAGGGAAGCATTGTCCCCATATAGATAGCTGAATTT--TAATTAAAGCAAAGAAATGGAGTCAATGTCCTCTAATGAGGTTTCCAGAAGTCACATTGA-AAATATTTGGGAGGGAGGGAAGATTGATTCAGAAGTAAAACACAGAGCAGTATGGAGATATGACACTGGAGAGCATAAATGAGT----CGAGTTTTCAAAAAAATAGAACAAAATT-TTTTGAAGTCAGTTGCCTATTAGCTTCCCTCACAGTTCTTAGGGAGATATAACTGAAGG-CCTCCAAAGAATTTGTGTC---TGTCC---------------------------------------ATAAGGTACAGAATAAATTTATTTCAAAGATCTCCTCCTCCCAGAGTTGATTATTTGACTTAGGGCAAAAGACTGAATGTAAATAGTAGCGAAACTGTCTCTGATATTATTGTAAGGAATAAAATAATTTTGCTTTGTAAATAAAATAGAATATTTTCTAGAGAGAACTGACCCAAACTCAATTTTAG-GACTGGTCCTGAAATTCAGAAATGCCTTTCCCATATTGCCTAACTGTGCCTTTTTCACTGGAAAGAAAGTGCTGCCTTCAGGGAGCACGCCTCCGCAGAGATCAGTAAAATCAATGAGAAATGCAATGTCCATTTGTCAGTAAAGACATCTGAAGTTTGATGGGTTTCTTGGGA-CTGGATAACTAGTTAAAGATTCTAAAGAAAAATTAAGTGGGGCATAGAAACCAAAAATCTCAAGAGATCTTTGAAGAAAGAAACATGAAAAATGAGGACAAATTTAGAGAAATGTTGCTGGCATAGATGTTAACTTCCAGAAGAAGATGGAAATAGACTACCATGCAAAACAAAAA------GACAGAAGAGAATATTAGCACTCTGTTGCAAAGGAgaataggtatgctctactggtaagtataatgcaaatattccaatatctgaaaaaaatcccaaatccaaaatacttctggttccctg----cattttggacaagggatactcaacAGGTATTTTAAAAGATCAAAATACAGATCACAGAATATGGATATTGAAGAATATGAGCAAACGAGAGTAAGAAAAAATGTTGGAGGACTTTTAAAAATGTATAAAGGAATTAATGAAT s mm3.chr3 56390061 1324 + 160674399 AATAA-ATAATTT-GAGGATCAACATAAACATCC-------TAGGTA--AGAGTTTATGATTTATGATATGGAGTA-TTGAGGCCA------------TAAAATATAGACAAAAAGTGATCAAATCTAAGGAAAAGCGCAGGTCTCTCGGATGAATAAATCAAGAACCCCCATGAAGTTGAG-CTTCAGAAGAGCCAAAT----------------------------GAAAATAATGGTCCTTGGCTGGAGAGGATATTCTGGCATA--------------------------------------ACTCTAGCCAGATCCTTATAGAT-------GAAGCTCTTAT-----CATTGAGGAGCACTGAACTGAAATAGGTAAGACTGAGCTAAAGATACGTTAACACACTTCTAC-------ATCCTATAACATTCCAG--TTTTGGGAGATGACCAAAT-------GAATGCTTTTCAAGGGAAGCCACAT-GCCATAGAAAATGATTGATTATTTAATTAAAGCAGATGAATGGAGCAAATGTCCTAAAATAAAGTTTCTAGAAGTTTCAGTGG-AAATATTTCTGACGGAAAGAAATCTGGTT----GACAAAGCACAAGGTAATA--------------CAGGTAGGATAAATGACC----TGAA-TTTAATGCAAACAAAATAAAATTACTTTGAAGTTAGTTGTGTA-TGGTTTATCTCATTGTTCTTAAGGAGATGTAACTAAAGGTCCTCCAAGGAA---GTATTTATAGTCCCAACCCCACAAAAATTCTAGTTT---CTTATTTTTCCCTCCAGAGTATATAGTA----CACTGTCAGTGTTCCCATTTCTTGGAGTTAATTACTTGGTGGAATGTAGAA-------------TAATAGCAAAACTGCCTTTGATATTATCAGAAGGAATAAAATAAGTTCCCTTTGTTAGTAAAAT-----------CATAGAGAATTTATT----GTCAGATTTTT-AGTTAACCTCACAGTTCAGAAACACCTTTCGCATATAACTTAGCTGTGCCTTTTCCCATTAGAATCAAGTGCTGCCTTCAAGAAGTGTGCCCGTCAAGGGATCTCTAAAACCAACGAGAAATCCAATGCCAATTTCTAGAGACAGACATGAGAAGTGGGATAGGCCTCTAGGGGGTTAGATCACTTCTAAAAAA--CTACACCAAAATTAAATGGCACATAGATGGCCCAAATCCCAAGAGATCTTTGAAGAATACAGCATAAAAGATGGAGACCAATTTAGAGAA---TTTTTGGCATGGATCTCAACTTCCAGAGGAGTATAGAACTAAGATATTATAGAAAGAAAAAA----CCGACACTAAAGGAATTTGGCACGGTCTTGAAAGAGAGACTGA------------------------AAAAATATTTAAG-----GATGTAACTCTCAAA-------------TGAATTAATG----CAGTTTGAAGAA-GTCTATCC--------TTTT------------------------ACtattaatttttaa-----------------atta---aaaaat----------tatta--tatatataatatatttGt----- s rn2.chr2 140745593 1327 + 246339213 AATGATATAACTT-GAGGATCAACACAAGCATAG-------TGGGTA--TGAGCTTATGATTTATGATATGGAGCA-CTGAGTTCA------------TGAAATATAAACAAAAAGAGATCAAATCTAAGAAAAAGTGCACCTCTCAC-------TTTCTCAAGAACCCC-ATGAAGTTGAGGCTTCAGAAGAGCCAAAT----------------------------AAGAATGATAGGCCTTGGCTAGAGAGGATAATCTGGCATG--------------------------------------ACTGTAGCCAGATCCTTACAGAG---AGAGGGAGCTTCTAT-----AGAAGAAGAGCATTGGATAGAAATAGGTAAGACTGAGCTAAAGATAAACTAACACACGTCTAC-------ATCATATGACATTCCAG--TTTTGGGAAAGGACAAACT-------GAATGCTTTTTAAGGGAAGCCAAAT-GCCATAGAAAAGGATTGATTA--------AAGCACATGAATGGAACATATGTCCTAAAATGAAGTTTCTAGACGTTTCAGTGGTAAATATTTCTGAGGGAAAGAAATCTGGTT----AACAAAGCCCAGAGGAGTA--------------TAGATAGGATAAACGACCCTCATGAG-TCTCATGCAAACAAAATA-------------GTGAGTTGTGCA-TGGTTTATCTCATTGACCTTAAGGGGATGTAACTAAAGGTCCTCCAAAGAA---GTATT---AGACCCAACTCCACGAAAATTCTAGTTTTTTCTTTTTTTTCCCTCCAGAGTATATAGTAAGTTCACTTTTAGTATTCCCATTTTCTGAAATA---TATTTGATAGAATGTAGAAGCTTGGATATAAATAATAGGAAAACTGTCTTTGATATTATCCTAAGGAAGAAACTAAATTCTCTTTGTTAGTAAAAT-----------CAAAGAGAACTTATT----GTCAGTTTTTTTAGTTAGCCTCACAGTTCAGAAACACCTTTCCCATACCACTTAGCTGTGCCTTTTCCCATTAGAATCAAGTGCTGCCTTCAAGAAGCACACCTGTCAAGGGAGCTCTAAAACCAATGAGAAATCCAATGCCAATTTCTGGAGACAGACATGTGATGTGAGATGGGCCTCTAGGGGTTTAGACCACTTCTAAAGGA--CTACAGCAAAATTAAATGGCACATAGATGACCCAAATCCCAAGAGATCTTTGAAGAATACAACATAAAAGATGGAGACCAACTTAGAGAA----TTTTGGCATGGATCTCAACTTTCAGAGGAATATAGAACTGGAATATTATATAAAGAAAAAAAAATCTGTCACTAAAGGAAATTAGCACTGTCCTGAA----AAACTG-------------------------AAAAATATTTAGG-----GACATAACTCTCAAA-------------TGAATTAATGAATACAATTTGAAGAA-GTCTATTC--------CTTT------------------------ACtattaatttttaa-----------------attatttaaaaat----------tttta-ttatatataaaatatttaa----- a score=25484.000000 s hg15.chr22 14524003 232 + 49476972 GCAATTAGTA--TTATT--TTTTAA---ATCAGTCATTAATAGCCACTCGCCATGATTGCCAACCCCTTTGATGAGTACTAATTTCAAA------ATTATTAAGGAAAGGCAAATATTTAGATTCATACAGGTTAAAAGAAAATATTTTCAAAATTTCAAATTTAAGCTTATAAATGTTCTAAT-----CTACTTTTGAATGTGTATTCGTGACCCAAGATTGGTTTTTTCCAGGCCCCATCATTCTAAT s mm3.chr3 56391537 234 + 160674399 CCTTTCACTA--TTAAT--TTTTAAAACATTAGTCTTTAATAGCTA-TTGCTATGCTTGCCAA-AATTTTGATGAGTACTAATTTCAAATATATTATTATTAAAGAATGTTAACTAGTTACACTTATGTCTATCAGGAGAAAATATTTTCAAATTTT-CAATTTAAGGTCATA-------TAATATAATCTGTTTT-GAATATATACCAATAA-CCCAGGTTGATTTTTCCAGAATAGTACCAATTTAAT s rn2.chr2 140747447 235 + 246339213 cctttctctgatCTAATAATTTTAAAACATCAATCTTTAAGAACTA-TTGCTATGCTTGTCGA-AATTTTGATGAACACTAATTTCAAATGTATTATTATTAAAGAA-ATTAACTAGTTACAATTAGGTCTATCAGGAAAAAATATTTTCAATTTTTTCAACATAAGGTTATA-------TAAT-----CTGTTTTTGAATATATACCAATAATCCCAGGTTGATTTTTCCAGGATAGTGCAAATTTAAT a score=13941.000000 s hg15.chr22 14527820 77 + 49476972 AAAAATAATAAGCAATCTGAGATTATTTTTGTGCATTATTTTGTTCTTAGGCTATATTTCATCATGAATATACAGTC s mm3.chrX 55987468 77 + 149996094 AAAGATAATATGCAATCTAAGATTACTTTTCTGTTTCTCTGTATTCAATGTGTATATTTCTCCAGGGATATACAGTC s rn2.chr1 17261659 77 - 276301343 AAAGATAATATGCAATCTAAGATTACTTTTCTGTCTTTCTGTATTCAATGTGTATATTTCCCCAGGGATATACAGTC a score=15564.000000 s hg15.chr22 14528105 194 + 49476972 GTTTCCCTAATATGGTATTATAAAACTGTTTAAACATATAAAAATGTTG-------TGGGAAGTGCATATTT-ATAGTCCAACCACTTAGATTGTACAATTATCATTTTGTTATATTTGCTTTACTACATATCTATCACTCTATCCACCATTCTATCCAATTATC----AACTCACCGTTTCTTATTTATGTCAAAGTATATATTT s mm3.chr4 126775690 191 + 152921959 GTCTCCCTGA-ATTTCCCTATGGAAATGTTCAGATATATCAGAAAGCCGGTAGACTTGGGCTGTGGATATTAGACACATC--CTATCTAAAGTCTACACTTAACATCTTACCAGATTAGCCTCACCACATAACTATCAAAGTAACCATCCTTCTGTCCATTCATCAACAAA--CACCCTCTTTT----------AAGAACATATTT s rn2.chr5 28063053 180 + 191625135 GTTTCCCCCA-A-TTCCCTATGAAAATGTGCAGGTGTATCAGAAAGTCGATAGGCTTATGCAGCAGATATTA-ATATATC--CTATCTAAAGTCTAGAGCTAGCATCTTACCAGATTAG-CTCCCCTCATAACCATCA----AATCATCCATCTGTCCATTCATC----AA--CACCCTCTCTT----------AAGAACATATTT a score=11889.000000 s hg15.chr22 14530878 85 + 49476972 TCTCTGGTCTT--CTCATTCTAAGGACATAACAGGTTCTCTTTTTCTCTGGAGATGAAATCTAGATCTTTGATTTTGGAACCAAATT s mm3.chr9 80408696 87 - 124467299 TCTATGGCCTTGGCTTGGTTTAAAGCCTTCATACATTCTGGTTTTCTCTGGAGTAAGCCTTAAGCTCTTTGATTTTGAAGCCATATT s rn2.chr8 82489110 87 - 127756414 TCTACGGCCTTGGCTTGGTTTAAAGCCTTCATACATTCTGCTTTTCTCCAGATTAAGCCCCAACATCTTTGATTTTGAAGCCATATT a score=15809.000000 s hg15.chr22 14530963 121 + 49476972 TGGACTCTTGACTCTGAAGCACCAATTTCTTCAGCAAGTTGTTCTCTGGAATCAATCCCAGGGTATGGGTTTTTCATAAATGCATGGATGACTGTGTGTAATTGAAAGGTGCTATAGGTGG s mm3.chrUn_random 21423098 121 + 117911829 TGAATCCTGGATTCTGGGATGCCTGTTTGTTGAGCCAGTTTTTCCCTGGTAACAATCCCAGGGAACCGATTCTTCTCAAAAGCTTCAATTAGAATATCAGTCTGGAACTTTGTGAAGTGCG s rn2.chr16 82672654 121 - 84226546 TGAATTCTGGATTCTGGGATGCCTGTTTCTTGAGCCAGTTTTTCCCTGGTAACGATCCCTGGGAATCGATTCTTCTCAAAAGCTTCGATTAGAATATCAATCTGAAACTTTGTGAAATGCG a score=19036.000000 s hg15.chr22 14531084 151 + 49476972 -TACAACACCATCTGGCTTCTCTATTTTGAAACTCCACACCAGGTTAATCTT-GTCCATGGCTGTGGCTTAAATCTAAAGTC-----AGGTTCTGGTGTTTTCTGGAATCCATGCCTAGCTCTTTGATTCTGAAACCAAATCTGGATTCTGGACTCTT s mm3.chr9 80408662 137 - 124467299 -TATGACATCATCTGATTTCTCTATCTTG------------------ATTTT-GTCTATGGCCTTGGCTT-GGTTTAAAGCCTTCATACATTCTGGTTTTCTCTGGAGTAAGCCTTAAGCTCTTTGATTTTGAAGCCATATTTAGCTTTTAGACTCTT s rn2.chr8 82489074 138 - 127756414 CTATGACATCATCTGACTTCTCCATCTTG------------------ATTTTTGTCTACGGCCTTGGCTT-GGTTTAAAGCCTTCATACATTCTGCTTTTCTCCAGATTAAGCCCCAACATCTTTGATTTTGAAGCCATATTTGGCTTTTAGACTCT- a score=20853.000000 s hg15.chr22 14531235 181 + 49476972 CTGCATTGATTGCTAAAGCAAGTTTTTGTTTGGTAGCATAACCTGGGTAAGGTTTTTGAGTGAAGGTATTGATGAGGATTTTCAATTGATCTTCTGTGAATTTGGTGCAATTGCACCTATGATTTGTTGCTACCATCTTGTGTGAAGAGGGGTC----TTCAACTATGCAGAAAGAGAGTTCTGG s mm3.chr9 80408969 172 - 124467299 CTGTGTTGCTTTCTAAACCAAGTTTCTGTTTGAAAGCAAAGCTGGGTTAAGGTTTTTGGTTGACTGT-CAAA-ACCAGTTTTCAGTGGCTCCTC--TGAATTGGGTACAGCTGTTCCTG---------GCTGTCATATGGTCAGAAGCATTGTCCAATCCCAGGGAGGTGGGGAGAGAATCCTGG s rn2.chr8 82489382 173 - 127756414 CTGAGTTGCTTTCTAAAACAAGTTTCTGTTTGAAAGGAGAGCTGGGTTAAGTGTTTTGGTTGGCTGT-CAAATACCAATTTTCCATGGATCCTC--TGAATTGGGTACAGCTGTTCCTG---------GCTGTCCTGTGGTCAGAAGCATTGTCCAGTCCCAGGGAGGTGGGGAGAGAATCCTGG a score=46425.000000 s hg15.chr22 14532136 649 + 49476972 AGATTCTACTCATCCCACACCAAAATGTAAACAGATATATTATTTTCTATACTCCCAGGATAATTTTGGTTTTA-CTTAAGCATCACTATCGCCCTCAAATGTCAAGTGGAAAAATAAATGTGAATAATCCCACCACTAGCCTCCAGACTTGATGTTCATGCTATTTCGTTTTTAAAATGACCTTTTAAAAGTTATAAATTAGAAA-CGTGGAAGTAGAATGGCTTCATGCAAGA------AATACTGGAATAAGATCC--------CTGTTCTGGTCCCAGAGTcttagacaagtcattcagcctttctaagcatcagttctccc-ttcaggaaaacatgggcattcatctctacgggagctgctagctctaactgtcagtgagtttctgaAACTTGCCCAGGAAGGAGCAGCCCCAGTGTGAGTGCATGCCA-CCCCTGTGCTTGCCTTTTGCCTGCT-TCTTATCCTTGAGGTAGCCTGCAGGCTTCTCCTCATTCATCTCCTAAGCCAGTGCTATCTGACGGCACAGAATATGTTTCCAATTCTGGTCTCATCTGAAATACATTTT------TCGTGGAAGAAA-GATTACATCTATGACCTGCAAAGCATTATGCTCCTCTCTGTATTCCGGATCTTGTGTTATTTT--TTTAATATGGGAAAATTTATGAt s mm3.chr6 66394361 587 + 149950539 AGATCCCAGTTATTCTACATC--AATCTATACAGCAGCATCACTTT---TATGTCAAAGACATTTTCAGTTTAT--TTAGTCAT------------------TTATTTGGATAAATTAATGTGAATATTCTGATTGTCTGCCTCCTGACTTTATTTCAGTTCTATTTTGTTTTTA------------AGAGATAATAAATGAAAAA-GTTGGAGGTAGGCTGGTTTTATTAAAAACAAAGCAACATTGAAACAAGACCCAGACATATGTTCTCTGTCCCTCGAG-CTTAGACTGGGGGCAGAGC-----------TCAGAGGTCTCATTCTGGGAAATATGGATAACAACCCCTGGGTGTGCGG--AACTCTAGTCGTGCATGGATTGCTGAAGTGCACCCAGGAATGGATAG-CC---TATGAACACATGCCAGGTTCCAGGCTTGCCTTTTGCAGGCTCACTTAACTCTTGGTTGTCCTAAAGGCAACTTTTCCGTTGG-----AAGCCAGTGTTACCTAACAAAAGGGA--AGGATTTCAGTGCTAGTCATATCTGAAAGAAATTCT------TCTCAGCAAAAATGATTATGTCTGTATTCTGCAAA---------------CTATATTTC------TGTGTTTTTTAAAATTTATGTGTGAAAAATTAAGAT s rn2.chr4 90992127 566 - 183307734 AGAACCCGGTTATTCCATGCC--AATATAAACAGCTGTATTACTTT---TATGTCAAGCATATTTTTCATTTTTCCTTAGCCAT------------------TTGTTTGGGTAAATTAATG-GAATATTCTGATTGTCTGCCTCCTGACTTTATTTCAATGCTATTAT-TTTTAA------------AGAGATCATAAATGAAAGATGTGGGAGGTAGGATGGTTTCATTAAAAACAAAACAGCATGATAACAAGACCCAGAAACCGCTTCACTATCCCTAGAG-CTTAAACTGGGGGAGGAGC-----------TCAGAGTTCTCATTCTGGACAATGTGAATAACACCCCCTGACCATGCAG--AACT------------------CTGAAGTGTACCAAGGAATGTCTAACCC---TATGAACACATGCCAGTTTCCAGGTTTGCCTTTTGCAGGGTGTTCTATTTCTTAGTTTTCCT-AAGGCAACTTTTCTGTTGGA----AAGCCAATGTTACCTAACAGAAGGGA--AGGATTTTAGTGTTAGTCATACCTGAAAAAGATTCTCCCCCCCCCCAAAAAAAA-----------GTATCCTGCAAA---------------CTATATTTC------TGTGTTTTTTTAAATTTATGTGTGAAAATTTAAGAT a score=60702.000000 s hg15.chr22 14533082 727 + 49476972 TTATGTCTTTTTATATGA-GAAAAATTTATTGAGATCATAAGGAAAAAAAAATCCCTGAGCCAAAAAATGTCAACCAAGAAGAAAAAGAAAGTGAGAAGTAAGAAAAATATGTATTTTAGAGAAAGTGAAGTGGGCATAGCAATCACATTGAAATCTGGGTATAGAACAACCTTCATCTCTAAAATTTATATTTAGT-----------------------------CAACCACTATGCTAAGCAAGGTTGTG-GTAGGAATACCTGCCACCTATTTTAGGCCACATGTCTCTTAC------GGGCAAAAAGTAAAGCAAAGCCATAATTGT-GG-------TTCGATATTTTGGATGTATTAATTCTCATTTCAGCATT--TGCATAGTCTCACATTTTGGAAAACAAAATTGTGGTGATTTCACTTGTCTCTCCATATCATGATTATATTCAAAACTAGGAAACAAACGTAGACTAAAGAAGC--AAATACTAAAGAGTGAGATCATGCAGGTTAAACAGATACTCTTTCTCAGGGAAA----AGTCATTTACCCATCATGAGCTGAT--ATACTGTTGTGAGTTTATATGGTTTAGTGTATTTACAACTTAACTAAGTATACATGATTCACTGTGTACTGTAGAATATAATTAAATTGACATTTGCTGGTACGGAATAAATTTGCACATCAGTGAAATAAATGATGAAAATAAATAAAGTCTGAGGCCAGATAATTCCATTGGTTACCAATTTATGTCTTCA--GCTCTACACCAAAGCAAA s mm3.chr6 66394948 707 + 149950539 TTA-TTGTTTTGACATGA--AAAAATCCCTTGAGTTCATAAGGAGAAAGAAGT---AGATCCATAAA--GTCAGCC---------AAATAAGTGAG--------AAAATATACATT-------AAAAAAAATCGACAGAGAAATCCCTATAAAATCTGATTGCAACA-AACTTTCATCTCTAAAATTTTTGTTTAGCATGTATCTTTATGTTTTTATTTATGTTTATGACTGCTTGTCTCAGCAAGAAAGTA-AAAAAAGTGCAAAGC-TCTGATCAGAGTCTCAAGCCCCTAATTACAATTGGTGCAAAGCAGAGTGGAGCTGGCATTGT-GGGAGAGCCTTTAATGCTTAGGA-----------GCCTTTCAGAATTTATGTATAGTCTCACTTCTTAGGAAATAGGA-TGTTGGGATTTTA-TTTCTTCTCCCTTTCATGATTATATTCAAAATTATAGAAGCTTTG-----TAAAGAAACTAACATACTAAAAGGGCAGATCACATAATTTAAACAAATATACTTTCTCAGAAAGAAATGAGTAACTTTTTAATCATGTTCTGACTAATACTTCCA-AAGCCTTTATGGTTTTAGCTATTTGCCAATT---------CAAATGGCTCACTGTGCACTGCAGACAACACATGCATTGGTATTTACTTACTAAGGGGAACCTTGCTTCTGAGTAAAGTAAATGGTAGAAACTAATGAAGTCTGTGTCCACGTGATCTC-------------TTATGTGCTCATGACTCAACATTAAAGCAAA s rn2.chr4 90992693 687 - 183307734 TTA-GTGTTGGGATATGAGGAAAAATCCC-TGAGTTCATAAGGAGAAAAAGTT---GGATCCATAAA--ATCAGTC---------AAGTAAGTGAG--------AAAATACACAT---------AAAAATACCAACAAAGAAATTCCTATAAAATCTGATTGCAACA-AACCTTCATCTCTAAGATTTATGTTTACCATGTATCTCTGTGTTTATAATTATGTTTATGACTGCTTGTCTAAGCAAAAAAAAGCGAAGAAACGCAAATC-TCTGATCAAAGTCTCAAGCCCCTAATTACGAGGGGATTACA---------AGCCAGGATTGTGGGGAGAAGTTTTAATGCTCAGGA-----------GCCTGAAAGGGTTTGTGTACAATATCACATCTTAGGAAATAAAA-GGTTGGGA--------TCTTCTCTGTTTCATGATTATATTCAAACTTGTGGAAGATTTG-----TAAAGCAGCTAACAAACTAAAGGGACAGCTCACATAATTTAAGCAAATACACTTTCTCAGAAAGAAATGAGTACCTTTCTTATCATGTTCTCACTCATAATCCCA-AAACCTTTATGGTCTTAGCTATTTACCAGTT---------TGAATGGCTCACTGTGTGCTGCAGACAATACTTGCACTGATATTTACTTACTAGGGGGAAACTTGCTTCTGAATGAAATACATGGTAGAAATGAATGAAGTCTGTGTCCATGGGATCTC-------------CTACGTGCTCATGACTGAACACT-----AAC a score=5609.000000 s hg15.chr22 14533889 98 + 49476972 TCATTTTGTACAACCAGAAATGGAAAAGGAGTCAGTCAAGGTGGGGCAGAAGTTTCTAACAAAGTCTAAAGCATAGTTTTATATAACTAATAATAAGG s mm3.chr11 64577830 70 + 122862689 TTATTTTGTACAACAGAAATTGAAAGGGGACC-----------TGAAAGAAGTTCCCACTA-----------------CTGTGGAGCAAATGACAATC s rn2.chr10 46723392 74 + 106208427 ----TTTGTACAGCTGAAATTGAAAGGGGACCTGATCC---TGTGAAAGAAGTTCCCACTA-----------------CTGTGGGGCAAATGGCAATC a score=2221.000000 s hg15.chr22 14533987 318 + 49476972 ACACAATGTTTAGCTTACTTAATTCCCAAACTGAGGTCACTAAAACTTAAGAATATCTACCAAAACTTAAGCAAAATCTCAGAGAGAAAC----TTTAAAAATAACATTTTATTTTTGATCATTCAAAATGTTTCAATCAATATTCTGAGCCTAAACGTGTAGGTGAGTGCTTTCTCCATCTTTGCACATGTGAAGTGCGCCTGAAC-CATAGCCCCACATTTTCTCAAACACCATCACACTCATAGAACAGAAAGGAAAGGGCAGTTTCACCAGCTAGCCCCCATAAACCACTCCCTAGGGTCCTCCCCAGCACCTGCTAAA s mm3.chr11 64577900 236 + 122862689 ATATAAAGTCTGACTAACTTAACTCCTAAACTCTGGTCATCAAATTCTTGGAA-ATTTACAAAAACTTGAGCTGGATC--AAGAAGAAATCCTTTTTAAAAACATCAATGTCTCTCTG-----TCA----GTTTAAATCTTTATACCAGGCC---------GGCTGGTGGCTTGCTCCA-----AGGCCTGTAAATT---TCTGGTCTCCTAACCCCA-ATCCTCTCAGACACCA-------------------------------------CAGC-----CCCATGAGCC---------------CCTTAGACATCACTAAG a score=43466.000000 s hg15.chr22 14534305 551 + 49476972 TTTGGGAGGCCTGATTCCAGGGGGCTGGATAATGAGCTGGCAAAATAAACCCAGAAGAATCGTAATTGCAGACAAAGATAAACTCAGGTTCCAGCACAGATAGACAGCCCATACCAGTGCTTTTGATATTAGCTGCAGTTAA-GCGGGCAGGAA--------AGGCTCCCACTCTATGGCCGGTGGTG------TGGTCAGCTCAGCGCCGCCACCTCGGCAGGCT----------------------------CCATCCCACCATCACCCTCCCAATCA----GGCTGATAGTGTCTCCTTATGCCAAGTGGAAGGAACTGCAATCAAATTCTGACACGACCTGCAAATCCTCCAGGGCCCTGGGCTACTGGTTAGGCCAGTAGGGCTGTGTATCAACCGATTAAACCAATTAATAACTGGC---AGCACAG-CACGGCCTCC-TTCT-CAACAAATTACGATGCTGATCCCCAGACTCGGCCATCCATGCC-CATGGTCTATTGTTCTTAC------GCTTTCAAAACGCCTCCCCTGCTTCATGCTTTCTAGTCTTGAGGACTTGGCTTAAATATGCTTCTGAATTGCCACTCC-CTCTTGTTGACAAt s mm3.chr11 64578136 534 + 122862689 TTTGGAAAG--TGATCAGAGAACCCTGGAT-ATGAACTGG-AAAGTCAGCTCAGAACTCTG---------------GACAAACTGGGCCTCAAACAGA---------CTGGAACTAGCTC-----ATATTAGCTTCGATTTT-GCAAACTTGGG--------------------------TGGTGGAGGCAGCAGGGTCGGCTCCAAGTTGCCACCAAAGCAGGCTCTGACCTCCCAGGATTCTGCCACACACCCTAccccacccccacccccacccccacGTTGGCTGATGGTGCATTGGTAGG--GAGCTGTAAGGACTG----CAAATTCCCTGGCATCCAGGAAAATCCACGAGGCTCTGGGCCCCTG---------GCAGGTCTGTGTATTAACCCATTAAACTCATTAACAACTCGCTCAGACACAGCCACGACCCTCATTCTACAACCGATTGC-CCGCTGACCCCAGAACTCAACCATCCATTCCACACACCCTCCCATTTTGTCTCAAAGGCCTTAAAAGCGCCTCGCCTTGCTCACAC--TTCGGCTTTGAGGACTTGTTTTAACCAAGATTGTGCCTTGCAACAACATTCTAGTTAATCAT s rn2.chr10 46723853 506 + 106208427 TTTGGGAGG--TGACTGGAGAACCCTGGAT-ATGAAGTGG-AAAGTTAGCTCAGAACTCTC---------------TACAAACTGGGCCTCAAGCAGA---------CTGGAACTAGCTC-----GCATTAGCTTTGATTTTTGCAAACTTGGGCGCTGTAATGACTCCCGATGTCTGGGTGGTGGCAGCGGCAGGGTCAGCTCCAAGTTGCCACC-------------------CAGGAGTCTGGG-------CTAGCC---------------------GTTGGCTGATGGTGCTTTGGTAG------CTATAAGGGCTG----CAAATTCCCTGGCACCCAGGAAAACCCACCAGGCCCTGGGCCCCTG---------GTAGGTCTGTGTATTAACCCATTAAATTCATTAACAACTCGCTCAGACACAGCCACGACCTTCATTCTACAACCGATTGC-CTGCTGACCCCAGAACTCAACCATCCATCCCACACCCCCTCCCATTTTGTCTCAGAGGCCTTAAAAGC-CCTCGCCTTGCTCACAC--TCCGGTTTTGAGGACTTGTTTTAACTACGACTGTGCCTTGCAACTCC---CTGGTTAATCAT a score=21977.000000 s hg15.chr22 14535150 240 + 49476972 GACAGTTCTTTACACCGTTCTCCAG-------------TTGGGGCGGAGTGGGAGACACCACGGAGCCTACCTCTGCAGGAGGCACAGCTTGGCAGAA---GGGAGACACCAGCCAGAGGAAGGATGCATTTTAGGCACCGAACTTTAGGTAAAGCGCTCTGGGTCAGGGGTCTCCTCCAGAG--TGGTCTGTTTAAAGTTAAAAAGGTCGCCTTCAAAATAGTTGTAAAATCTATACACTTACCCAGACA-------------------------------TACACAt s mm3.chr11 64578670 251 + 122862689 ------TATTTATGCTGTTCTCCAGCGGGTGGCCTATCTCGGGACAGAGAAGGAGGGACCCTACAGGCCTGGTTTGGA----GCACAGCCTTG-AGTGCCCGGTGGACTCCAGCC-GGGAAGGGA---------------------TAGTTGCAGCCCTCTGGGTCAGCGG----CTCCTGAGCCTGTTGGATTTAGACTT-TCAAGGTTGCTTTCAAATAAATCGTGAAGTCCTTACATTGCTCCAGGCACTCCGAACAGTCTAAAATGATTTATAAGCTCTAAATAA s rn2.chr10 46724359 252 + 106208427 ------TATGTTTGCTGTTCTGCAGCGGGCGGCCTATCTCGGGACAGAGCAAGAGGGACCCTGCAGGCCTGGTTTGGA----GCACAGCCCGGGAGAGCCCGGTGGACTCCAGTC-GGGAAGGGA---------------------TAGGTGCAGCTCTCTGGGTCAGCGT----TTCCTAAGCCTGTAGGATTTAGAGTT-CCAGGGTTGCTTTCAAATTAGTCGTGAAGTCCTTACATTGCTTCAGGCACTCGGAATAGTCTAAAATGATTCACAGGTTTTAAATAA a score=235905.000000 s hg15.chr22 14535670 2376 + 49476972 ACC-TATTAATTATTCTTAATT----AAAACATTTAAAG----------GACACAGCATTTGGGGTCAGCACAG------------------------CATTTGCAGTGGCTGCTCC------AGCTTCGGGTCCGCAGGTCACCGCGGGGGCCCGGTGCCTACTGGCCCG-GCCGCCCTGCGGGTTAGCTCATGGGGATTCTCTGGAGAACCCTGAGCCCACCTCCTGCGCCCCGCCCAACCTTGGGTCCCCAGGCCC----AGCCTCCGAGGCCCCGCTCCCAG--CGCTG----CCGCCAGAGCTCCAGGCTGCGCTCCCCCAGGCAAAGGCGCCACCGGCGTGTCCAGCGCAGCCTCCTCCTCCAGGCGGCGCGTGTGAGTCAATGGAAATGACCGTGGCGGGCGGA-GCAGCCACCTAGGACATCGC-------GGAAGCCTCCTGAGGGGACTTCCACGGCTTGTCCCAGGAGCTTCTACAACAGCTGGCATTGAGAGTTCAGTTATAATATTTTCCGCCAGTTTTTCCCAGCCCGGCCCC-CAAGCGTCTGATTTTAAA----------------GTTC---CCGCCTCAGGCTCCGGGGCGCC------------------TACCCTGCAAGGGCGCCAGTTCTCCGACACCTGCTAGGGAATGAATCCCCATCCCAGGAGGAAGGCGTGGCGGGGACG---------GAAGAAACAACCACAC--------GATCTGTGACAGTGACCAAGCTTTAGAGG----CCCCGTGTGCCTGCCAGGCGCCTGAGCCCACACC-----GTCCACGCTTCCCTGCCCCGGCGGGAACCAC-CTGTTCTCCTTGCACCGGCGAGGGCCCGGGGTCACCCCCCGCCGGGC--CGACCCCAG-GCAGCTCCAG-AACCCCCTCCCAATCGCCCCG------TCTTGG----GAGCGCAGGGAGTCTGGCTCTT---------------------------CCCTGCC-----------AATAACGA----AATC-ATCACGGACATTAGGAAAGCG--GGGCGAGGCTGGGAAGGGAGCGGCTTTAATC--CGGGGTCCGCCCCCTTCAATTCTCCAGC--TTAGCGGTCCCGAAAGTGGGGTGGGGACGGGGATTGAGG-CTGAGCTCGC-TTCTTCCTTGTTTTCCG-GGTCTTGCGCCTC--TGAAGCGAACTAGGCC----TGGAGGAGTGCTGGGGGTCGAGGAAA----CAG-GGTTGG--GGTGACCGAGGGACAGGTGGGGCGGGCACCTGGGCCCCGGTCGAGG---CGGATTCCGAGGCGGAGCCGCTGCCTGCCTGCGCCTCGCCTGCTCGGTCCACCCAACAGCTCCGCCCTAGACTCGCAGCTGCGGAAGCGGTGGGCCG-GGTGGTGATTACAACCCTGAGCGCT--GTCCCTTTGGAACCTGACTCCCGACT-----------CCGCTCAGCAACC-----------------------GGGAGGTT---------------------GCGACCTCAAAGCCCTCTGTGCTTCTC-------------CATCGATACCGGG-------------------------CCGCCTCTCTCGC--------------------------CTGCAGCGCACGCCTCCGCCC------------------------CCAGGGGCAGCGCAGCGAG-------GCGGAG----------ACCCTCCT---------------GCATTCCGAGCGTGCGGGGCAGCCCTCAGACTGAG--------------------------------GACCTGCGACTTCGTGGG------ACGCCGGTGTCCGCCACTGCGCCCCTCCAGGGAGCAGAGGCGGCTCTGGAAGTCGGTTTAGGGCGGAGACCGCGACTGGAGGGGCGCAGAACGCTCTTCCCAGCGTCCCGGGCTCCACCGGCACAATTTTAAAACCAGGGGCGA---AATCCGAGTCCTGCCG------CCACGCGGG-----------GGTGGAGCGTGACCGCCTCGCCGCGCGCTGTCTCAGGCTCCGCCGGCT-----TTAGCGCCGCGAGGCTGCCAGGTGAGTTCCAGGGCTCTGTGGTTCCTAGAGCGCTCCCGGG-----AGTCTCC-----TGGCTG---CAGCGGGAACCG-------------------AGCTGGATGCCCGGACAGCGCCGGGGTCGTTTTTCTGCCCCTGCCC-------CGTGGCCGGAGCCGCAGGCCTGCCGCTACCCCCACCCGGGCCACGCCTTCCTTC-----CTCGCGGCC-GGACCGC-GCCAGAGTCCCGGGCCCTGGC-TGGAAACTCGCAGGCCCCGGGCA--GCCTGGGCCGCAAGTGCGAT-GAAGAAGCGGGGCCCGGC-------GCGCACATGT---GGTTC-CGGGCAGGAGCCCCGG------CCGCCTCGTGCCCTTCTTCTCGCCCACGACGGTGGCCGGCGGCGGCCTCTGCTTCCCGGACCCATGAACAAAGCTGGAGATGCGGCTTTGGA-----GTCGGCCCTGGGACCTGCTTCTTCT-------------------------CTTGGCTTCG-------------------------GGGACCGCAGCCCAGGG--CGTTCCCTCCGGATCGGTGGCCAGGGCTTGCGGGGCGTGTGCGACTCGGGACCCCCAGCCGGGCAGCAGCGGCC-------------------------------------------------------GCCAAGCATGGCAAGGAGCAGCGCCAGCTT-CTCCCCACCGCGTCCCGGGATGGCG--GGCTTCGGGTGGGAGCCGGCCCGGGACATCCAGGTGGGATCAGCCACCGCTCAGGCCTTGTCCCA---------AGCGGACGCGGCCAGAGGCA-GTCTCAGCACCACGCAGG----CCGCGGGCTCAGTGGGCAAAGAGAGGGGCCCCCG s mm3.chr11 64578921 2818 + 122862689 ACAGCATTAACTTTTTTTTCTTTTA-AGAAAATATTCAGTAACTCTGCTGGCACACTGGTCGCTGGTGGGACAGCCAGGGAAGGCCGCGCGGACAGGACACTTGC----GCTACTGCTACTGCAGCT--AGATCACCAGGTCACCGCCGCGA-------------GGCCCGTGCCTCCCTATGGCTT--CCGAAGGAAA--------AGGACCCCGGCCC-----CCCGCGGCCTGTTGGAACCCGGG-----TGGCCCGCATGGCTGCTGGCGGCGCGGTTTCGGGTCGCCGGTCCCCGCCAAGCTCTTCGGCTGTGCTCTCC--------GTCGCCGCCCA-------AGAGAAGCGAGGGCCTCCAG----------------AGCCCCAAGGGCGGTGGCAGGTGGAGGCAGCCACCTCTGCCGCCGCCTCTGTGTGAATCTTCCAGTGGGGATTTCCACCACCTGCCCCAGGTGCCTCTAAAA------CCTTCAAGGGCTCAGCGAC----TCGCCCGCCACTTGCTACCAACCCAGCCCG-AGTGGGTCTGGTTaaaaaaaaaaaaaaaaaaaaGACCCAGGCTGCCTCGGGTTCGGCTCCGCCAGAAATGATTCTAAAGATTAGCCTGCCA----CCAGGTCCTCGGAA------------------CCTTATCCCAGGAGCCCGTTGTGTACAGGACGAGTGGAGGCAAAGAGGTAATGGCATCAACAACACATCGATGGCAACAGCCTACAGATAGCGAAGGCCCCCGTG-----GTAAACTGCTCCTGGCTGCACCCAAGGATTCACCCTTCCAGGCCCAGCCAGAATCCAAGTTATTCCCAGTGCCCGGATGAGACCC--AGG-----ACTCATCGGACGAGAATCCGAGCGTTGCACCCGGAGTCTCCATTC--TTAGCCCGCAGTGTTCTGGGAACTGTGAGAAAGGAGACCGTCACTGCTGGCTTAAACCTCCAGACTTGGGCAACTCTTCC---CAATTTAAAATAATAATAATAGTA-GTAAAGAACAAAGGGGAGGGGGCGAGAGAGGCTGGGAAGGAAGCTGCTTTAATCCTCAGGGTCAGGCCCTTTTATTTGCCACGCCATCCGTGTCCTAGAAAGTATGGTCGAGGCAGAGAGCCGGG-TTCGGTTCGTGTTTCTCCTTGTTTTCGGAAATCCTGATGCTCTTTGAAAGTAATTGGGTC----TGGGGGGAAA---AAAATCGAGGGAGACGCTAA-TGCTGGGTGATGACCTA--------------AAGCGCTGAGGACCCGGCTGGGTTTCCGGAAACTGGGGTGTGACCCCT------------------------------CCAGCAACT-CACACCAAACCAGCAGCCCGGGATGCAGTGGGCAGAGGTCGTGAATGTGACCCGGGAGCCTCGGTCCCTTTAGAACTGGGCTCACAGCCGGAAGCCACGACCCCGAAACAACCCTCATTTCTCAATCAATGGCCCAGGGATATTCTTTGAGGTCGGACATGTACCAGGTCCGCAGAAATACACGTCCTTGTCTTGGCGCTCCCAGCACCGAGACCGGGAAGGCGAAGCGGCTGC--GCCGGCAGCGCCTCGGGCGCCCAGAAGCCTTCAAAGAGGCTGCGCGCTGCAGTGCGCGCCTTTGCCCGACAGGGACCAGCACAGCTCCACGCCCGGCGCGCCGCAGCCAGCAAAGTCGCGCAGCCTCCCGGTTACCCTCCCTAGCACAAGCGCCTCGCAAGCTGAGCGGGTCAGACCCCCTTCGGGTTGCGGCAACAAGAAGAATTGTAACAAAAAGTTA---GACTCAAAACACCCTTGGCTCTGAGCCTTAGCCTGCGCCCCTCTCCCCATCTGGGCAGCAGAAGCGACTCTAGCAGTTGGTGCTCGTTAAAGGCTGTGACC-CAGAGGCGCACAACACTCCTCCCCGCGTCCCTGGCTGC-----------------AAGAGAGACAA---AATCCTAACCACTCCGAGTTATTCGCGTGGGATGCGGCCACAGCCAAAAGGTAACCGGTTCCTCCGGCGCTTTCCCAGTAGCTGCCGGGTGGGTGTCTTTGTGGAGAGATCACCTAAATGGTTCTAGGGCGCAGCATACCAGCCAACGGTGCCAAGCTAAAAGTTTCTGTAGGTGGCTGTCTCAGCCTACTCCGGAGCATCTGATTTCTCCCCAACTGTCCACCAGCAATGTGC---GGTCGCACTTTGGTCCCCGCCCGCCCTAAATTGACGGAAGTTGTACCCCTGCTTCCCTCCCCACCTGACGCGCAACGGCCGGTGGGGGCTCACGGTCGGGATCACGGCCGGCGCAGCGGCCCCTGGAGAGGAAACTCACCGGTACCAGGCAAGACCCTTGTGGTAGCTGCGGTCGAAAAAGTGGGGCTCGGCGCCCACGGCGCGCACGTCGGGGTGCACGCGCAGGAACTCCAGCAATGCCCGCGTGCCGCCCTTCTTCACCCCGATGATGATGGCCTGCGGCAGCTGCTTGCTCCCAGCGCCGCTGAAGAAGCTGGAGATGGGACTGGGGGAGTCCGGCGCCTCTGGACTCTGCTCCTCCTGGCTCCCAGCGCCTACTGTCTTATCCTTGCCTGCAGCCAGCGAATTGGCCGGAGGTGCCCGGAAGGGCATCTTAGGGGATGTCTCATTCGGAGCTGTGACCAGGGCTGGCTGAGCGTGAGTAGCGCGGGACCCCGAGCCCAGGAGCAGCAGGCCGGGAGCGGCGGTACAGGAGCCGGCGCACGAGTACAAAAACATGTACAGCCAGATGCAAAGCATGGCGAAGAGCAGCGCGAGCTTCCTCCTCACcggcggcgggggcggcggcggctgc-ggcAGGAACCGGCCCGGGACATCGAGACAGGACCGGCCGCCGCTCAGGCGCTGCCCCATACGCGGCCCGCGGGCGCGGCCAGGGGCATGGCTCAGCACATGGCAGGAGTCCCGCCGGAACAGAGAGCACCGCGACGGTCCCCTG s rn2.chr10 46724611 2775 + 106208427 ACAGCATTAAATTTTTTTTCTTTAAGAAAAAATATTCAGTAACTCTGCTGGCACACTGATCGCTGGTAGGACAGCCAGGGAAGGCCGCGCGGACCGGACACTTGC----GCTTCTGC------GGCT--AGATGACTAGGTCATGGCTGCGG-------------GGCCTGTGCCTCCCGGTGGCGC--CCGAAGGAAA--------ATGACCCTGGGAC-----CCCGCGGCCTGTTAGAGACCAAG-----AGGCTCGCAAGGCTGCTGGCAGCGCGGCTTCGGCTCGCCGGTCCCCGCTA--CTCTCCGGCAGTGCTCTCC--------GCCGCCGCTGG-------AGAGGAGCGAGGGCCTCCAG----------------AGCCCCAAGGGCGGTGGCAGGTGGAGGCAGCCACCTCTGCCTCCGCCTCCGCGTGAATCTTCCAGTGGGGATTTCCACCACCTGCCCCAGGTGCCTCTAAAA------GCTTCAATGGCTCAGCGAC----TCGCCTGCCACTTGCTACCAACCCAGCCTGGAGTGGGTCTGG-----------------------ACCCAGGCTGCCTCAGATTCGGCTGGGGCAGAAATTATTCTAACGATTAGGCTGCCA----CCCAGTCCTCCGAA------------------CCTTATCCCTGGAGCGGGCTGTGTATGGGACGAGTGGTGGGGAAGAGGTAATAGCATCAACA---CATGGGAGGCAACAGCCTACAGTTAGCGATTGCCCCCATG-----GTAAACTGCTCCTGGCTGCACCCAAGTATTAGCCCTTCCTGGCCCACCCAGAATCCGCATTATTCTCAGTGCCCGGAGGAGAGCACGGGG-----ACGCAGCGGACAGCGATCCGAGCGTAGCACCCA-AGTCTCTATTC--TTAACCCG----------------GAGAGAAGGGAGTCCGTCACTGCTGGCTTAAACCTCAAGACTTGGACAACTTCACCATTTTTTTTAAAAAAAAAA----AGTGCATAAAGGACAAAGGGGAAGGGGCGAGAGAGGCTGGGAAAGGAGCTGCTCTAATCCTCAGGGTCAGGACCTTTTATTTGCCACGCTATCCATGTCCTAAAAGA-------GAAGCAGAGAGCGGGGGTTCGGTTCGTGTTTCTCCTTGTTTTCGGAAGTCTTGACCCTCTTTGAAAGTAATTGGGTCGGGGTGGGGGGAGG-TGGGAATCGAGGGAGACGCCAAGTGCTGGGTGATGACCTA--------------AGGGGCTGGGGACCCGACCTGGTTTCCGGAAACTGGGGTGTGACCCCT------------------------------CTAGCAGCT-CACACCAGACCAGCAGCCCGGGATGCAGTGGGCAGAGGTCGTTAATGTGACCCGGGAGCCTAGGTCCCTTTAGAACTAGACTCACAGCCGGAAGCCACGACCTCGAAGCAACCCTCATTTCTCAATCAATGGTCCAGGGATATTCTTTGAGCTCAGACGGGTACCGGGTCCTCGGAAACACAGGTCCTTGGCGTGGCCCTCCCAGCATAGAGGCCCAGGAAGCGAGGCGGCAGCACGCCGGCATCGCCTCGGGCGCCCAGAAGCCTTCGAAGCCGCTGCGGGCTGCAGTGCGCGCCTTTGCCCGACAGGGACCAGCACAGCTCCACGCCCGGCTCGCCGCCGCCAGCAAAGTCGCGCAGCTTCCCGGCTCCCCTCCTGAGCACAAACGGCTCACCAGCCAAGCGGGTCAGACCCCCTTCGGATTCCCGCAACAAGGAGAATTATAACAAAAAGTTAACAGACTCAAGACCGCCTTGGCGCTGCGCCTTAGCCTGCTCCCCTTTCCCCATCTGGGCAGCAGAAGCGACTCTAGCAGTTGGTGCACGTTGGAGGCTGTGACC-CAGAAGCGCACAACACTCCTCCCCGCGTTCCGGGCTGC-----------------AAGAGAGACAACAAAATCCTAGCCACGCCGAGTTATTCGAGTGGGATGCGGCCACCGCCGGAAGGTAACCCGTTCCTTCGGCGCTTTCCCAGTTGCTGCCGGGTG----TCTTTGTGGCGAGGTCGCCTGAATGGTTCTAGGGCGCAGCGCACCAGCCAGCGGTGCCAAGCTACAAGTTTCTGTAGGTGGCTGTCTCAGCGTACCCCGGAGCATCCCAATTCTCCGCAACTATCCAACCGCAATGTGC---GGTCGCACTTTGGTCCCCGCCCGCCCTAGGTTGACCGAAGTTGTGCCTCTGCTTCCCTCCCCACCTGACACGCAACGGCTCGTGGGGGCTGAGGGTCGGGATCGCGGCCGGCGTAGCGGCCCTTGTA-AGGAAACTCACCGGTACCAGGCAAGACCTTTGTGGTAGCTGCGGTCGAAAAAGTGGGGCTCGGCGCCCACGGCGCGCACGTCGGGGTGCACGCGCAGAAACTCCAGCAGCGCCCGCGTGCCGCCCTTCTTCACGCCGATGATGATGGCCTGCGGCAGCTGCTTGCTCCCAGCACCGCTGAAGAAGCTCGAGATGGGACTGGGGGAGTCCGGCGCCTCTGGACTCTGCTCCTCCTGGCTCCCGGCGCCTACTGTCTTATCCTTGCCTGCAACCAGTGAGTTGGCCGGAGGTGCCCGGAAGGGCATCTTAGGGGATGTCTCATTCGGAGCTGTGATCAGGGCTGGTTGAGCGTGAGTGGCGCGGGACCCGGAGCCCAAGAGCAGCAGGCCCGGAGCGGCGGTACAAGAGCCGGCGCACGAGTACAGGAACATGTACAGCCAGATGCAAAGCATGGCGAAGAGCAGCGCGAGCTTCCTCCTCACcggcggcgggggcggcggcggctgc-ggcAGGAACCGGCCCGGGACATCGAGGCAGGACCGGCCGCCGCTCAGGCGCTGCCCCATACGCGGCCCGCGGGCGCGGCCAGGGGCATGGCTCAGCACATGGCACGAGTCCCGCCGGAACAGAGAGCACCGCGACGGTCCCCTG a score=176078.000000 s hg15.chr22 14538067 1585 + 49476972 TCTCCAACCTC--CTACTTAACAGCCCCTGTCTCATATGCTGGTTCCTG--TCTCTAATAGTTCCTAGGTGTCTGGGACCGGTGACTTGGCCCCTGTTATCCCCGAGCTCAGCCGCAGGCTTCAGGGACCTGGGCAAAGTGTGGATAACCCTGCCCGCCTTTTGGGGAG-GAAAGCCAGTTGCTCCCCTAGCCTCTACTGTGGCACTACGAAGCAAGGGCAGCCAAGCTGATCGCTGGTTTCATCTGCACCACCCCACTCCCTCTGGCAGGTGATGAGATGGCCAGTGACGGGTGGGTTGGCAGCTGGACTGGCGTGGCATGGCTAGCTGCCCTGGGCACCATATTCCCTGCCTGTCACCACTCCTGGTTGTCCAA----CAAAGC-AAAGTCACAATGACAAGATCCAGAGAGGGGAGTCTCCAGCTGGAGATGGTGCCGCTGTCACAGGGCACCAGAGCAGCAATGTGACAGCTTCTCATGGAGG-------------CAGACTCTGTTCCCAGTCCCTACCCAACCCTGGCTTGATCCTTGTCAGTGTCTTATTTCTTTGCCTTGCCTTT--------------ATCTCAGCCTGGCTTCCCTTCCAGGCAGCTC-TGAGTGGCTCTTGGTCCAGGCTTGTCTCCATCTCTCCTTCCTCTTCCCAACTCCCTAAACTCAGGACCCAGTCACTCCTGCTCCTTacatacacacacacactaacacacgcacacactcactctcaccctctcccccccacacactcacacacacTCCCACCCTACCTTAGGAAACAGGTTTCCTTCCATGAACCTTTATTAAGACCTGTGGGGAATGACCAGGATCTGGG--CCCCCAGTGTGTCTGTGA--GCCAGCTT------GTGTGTGTGTGCAAAGGTGTGAGTGTGTGAGCATCCATGTGGCTGTGGAAATTAGAAAGCATGTGTGTACACACGCGAGTGTGACAGTG-AAGTGCTGAGAGTTGAAACAGTGTGCGTTTGGGGTCAGTGTGACCTTGTCTGTGTGGGCACACAGGTGAGCTGTGGCGACGGTGGAGGGATGTGAGTGACTCTGAGTGTGGAAGCTGAGCCCAGGGCAGATGGACAAATGCATCCTTTGAGCT----------CCTGTAG-AGACTGCCA-CTCCATACCT-TGCTCAACTACTCCCTCTTTGTCATCCTGGGCTCCCTCAAATCAGGATGGGGTGCAGGAAGGGGAAGTGAAGCTGGTGACCTATGGGAAGGGGA-CTGTCTGCTTCCTGGGCCTGTCAGCCACTGATCTGTTCCATGTTCCTACAAATACTTACAAATCCCAGCTGCTGAGGAGCAAGACATCCTCCACCAGCCAGTTGGGGCTCCTGGCCTGGA-------------GCTATGGAGCGAGACACATGGGGGAGGGGAGGGGG----GACCGCATCAGAAAGGCTGGCATCAGGGACTCCTGAGTTCAGCTCCTAGTTTTGCCAAAGGTTAGCCTGGGCACCCCAGTATGTCTTCATCAGGAACTGCAGAGCCAGACACACCATCCACGCCTCTGCCCCAGGAAG-CGGCCCTACCTCTGCCTGAAGAGAGAGACTCCCACCTCAACAGCCAGCTTTCTGCCTTCTAGTCACGCCTCTCAATTAGGGGTAAAA-AGAG s mm3.chr11 19060771 1473 - 122862689 TTTCCACCCCCCACCCCATTACAGTCCC------ACTCCCTTTTCTCTGCCTGTCTCATGGGTCCTGGAGTCTTGGGAACACATAGATGTTCCAAAC--TCCCCAAGCCCCACTTGGGAGTTCAGATCCCTGGGCAAGGTCTGATTAACCCTGTCCATCTTTTGGGGAGTAGGACCCTCTTGCTTTCTT----CCTGACACGTCCCTTCAAGGTAAGGACAGT---GCTGATCCCCGGTCTCATCTG---------GGTCCCTCT---CGATGATGAGATGGGCACTGATGGGTGAGCTGGCAGTCAGGCTGGAGTGGCACAGCCAGATGCCTTGGGCGCTCT-CTCCCTGCTTGTCACCACTCCCGGCTGCCCAAGCAGCAAAGC-AAAGCCACATTGACAAGATCCAGAGGGGAGAGGCTCCAGCTGGGGCT-GTGCTGGTCTTTCAGGCCACTGGAGCAGCAATGTGACAGATTCTCATGTGGG------GAGGGGGGGGGCTCGGTCCCTGGTTCCCGCACC---CCGTTTCAGCCCTTGGCAGTCTC-CATTTCTTTGCCTTGCTTTTTGTTTCTTCCTTCCATCCCAGACTGACCT----------CACCTCAAAAATGGCCCTTGGTCCAGGCCTCTCTCCGTGT-CCTCTTTTTCTTCTTACTCACTCA--------------------------CTACACAC---CACACACTTGCATG-----------------------------TCACACATGCACACACGCACACAC---------------------CTCTCCAGGAATCTC--TTAAGACC-ATAGGAAGTGACTGGGACTTGAGTCTCCCCACCCCGTCAGTGATTTCGAGCTGgtgtgtgtgtgtgtgtgtgtgtgCGCAAGCCTGAGAGCATCCGTGCAGATGTGGGAGTTACA----GTGTGCAAGCACACACAAGTGTACGAGTAAAAGTCCTTAT----------GTGTGAGTTGGGCGTGAGCTTGGCCTTGGCCCTGTGATCCCTCGAGTGGGCTG-GGTGA-GGAGAGAGGATGTTGATGACTGTGAGTGTGGAGACCTATCCCGGGACAGATGGGAAAATGCACCCTTCCAGCTGGCATCTCTGGATGTAG-ATGCAGCCAGCCCCACACCC-TTTCTGACCA--CCCGCTTTGTCATCCTGGACTCTCTCAAATCAGGCCAGAGAGTAAG----------GAAGCTGCTGGGCTGCAGGCAGAGCCTCTG-CTGCTCCCCGGGCCTGTCAGCCACTGATCTGTT-CGTGTTCCTATAAATATTTACAAATCTCAGCTGCCGAGGAGCAAGACATCCTGC----GCCAGCTGGGGCTCCCAGGCTGGAAGCTGGCGGGAGGGATCTGGCAAGAGAGGACCACGGGAGGGAGGGAGGGTATGGCTGTTGTGCAGAGACAGGTGTTCAGGACTCCTGAGTTCAGCTCCTAACTTTG-CAAAGCTTAGCCCATGTAGCC--------------------CCGCAGATCTAGAAATATCAGCCACAGTTCTGAATCAGGGAGCCTGCAGAATTCCTGTCAA-ATAGAGGGTTTTCT-CCTTTATAGCCAACCTCCTGCA-TCTACCCATGTCTCCCGGCTGGGATTTAGG-AAGG s rn2.chr10 18665078 1468 - 106208427 TCCCCAC------CTCCACTACAAGCCCCGCCGTGCTTCCTTTCCTCCGAATGTTTCATGGGCCCTGGAGTCCTGGGAACACGTAGATGCTCCGTG---TCCCCAAGCCCCACTTAGGAGTCCAGGTCCCTGAGCAAGGTCTGGTGAATACTGTCCATCTTATGGGCAGTGGGACCCTCTTGCTTTTTT----CCTGACATGTCCCTTCAAGGTAAGGACAGT---GCTGATCTCTGGTTTCATCTG---------GGTCCCTTT---TGGTGACAAGATGGGCACTGATGGGTGAGCTGGCAGTCAAGCTGGAGTGGCACAGCCAGATGCCCCGGGCGCTGT-CTCCCTGCTTGTCACCACCCCCGGCTGCCCAAGCAGCAAAGCAAAAGCCACACTGACAAGATCCAGAGGGGAGAGGCTCCAGCTGGGGTT-GTGCTGGTCTTACAGGCCACTGGAGCAGCAACATGACAGCTTCTCATGGAGGGGGGTTGGGGGAGGAGGCTCTGTCCCTAGTTCCCGCTCC-CTCTGCTTCAGCCCTTGGCAGTCCC-CATTTCTTTGCCTTGCTTTTTG-TTCTTCCTTCCATCCCAGACTGACCT----------CAACTC-AAAATGGCCCATGGTCCAGGCCTCTCTCCAGGTCCCCCCCTTTCCCCTTATTCATCAA--------------------------CTACACAC---CATACACTTGCGTG-----------------------------TCACACACACACACATGCGCACACAC-----------------CTCTCTCAAGGGACCTCTGTGAAGACT-ATAGGAAGTGACTGGGACTTGAGTTCCCCCTGCCCGTCTGTAATTGTGAGCTG--------GTATGTGTGCAAAGACACGAGCCTGAGAGCATCCGTGCAGAGGTGAGAGTTAC-----TTGT----TCACACACAAGCGTACAAGTGAAAGTCCTCAT----------GTGTGAGTTGGGTGTGAATGTGGCCTTGGCCCCATGAGCCCTCGGATGGGCTG-GTT----GAGAGAGGATAGGGATGACTTCGAGGGTGAAAACCTAGCTAGGGGCAGATAGGAAAATGCACCCTTCCTGCCGGCATCTCTGGATGTAGAAAACTGCCAGCCTCACACCCTTTTTTGACCA--CCCGCTTTGTCATCTTGGA--CTCTCAAATCAGGCCAGAGAGTAAG----------GAGGCTGCCGGGCTGCAGGCAGAGCCCCTGCCTGCTCCCTGGGCCTGTCAGCCACTGATCTGTT-CGTGTTCCTATAAATATTTACAAATCCCAGCTGCCGAGGAGCGAGACATCCTGC----GCCAGCTGGGGCTCCCAGGCTGGAAGCTGGTGGGAGGGATCTGGTGAGAGAGGACCATGGGAGGGAGGGCGA----GGCTGCTGTGGAGAGACAGGTGTTCAGGACTCCGGAGTTCAGCGTCTGACTTTG-CAAAGCTTAGCCCGGGTGCCC--------------------CTGTAGGTCTAGAAATATCAGCCAAAACTCTGAATTAGGAAGCCTGCCCTACTCCTATATG-ATAGAGGGTCCTCC-CCTTTATAGTGATCCTCCTGCA-TCTACCCATGTCTCCCGATTGGAATATAGGAAAGG a score=5311.000000 s hg15.chr22 14539788 466 + 49476972 AGCTTCTTACCCTTTAAACACCACACAAAATTCTCCTGGAGTTCCTGGGGGAGATTGTCTCTTTGAAATCAAAATCTTTCCCAGGACACCTTGAGC-AATCCTTCAGGCTCTTTCTGGATTGGAGGCAGAAGAAATTGCAGCTCGGTGACCCTCCCTTTGCAAGGGCCCCCTCTGCA--------------------------------------------------------GCCCTTGAGGGG------------------------------AGTGAAAGCATTTTCATTTGGCCTC-ATGCCCAGCTGAAGCCAGCTCTTTCACTTCTGGAGCTGGGCTGGTTGTGATAA----CCTGGAGGAGGGGGAATGAGTTGGGATGACTCACT---TGCCCCAGCCCATCAACCCTGGCCTAGGCTTGTGGCCAGACACC--------TGGTTAACCACCCCAAGAGAGCTTCCTTTCTCAGGGAAATAATGATTATTGATTATTGATCCTCTATATC--CACTTCCCAGGACACTG-----------TCAGGC------ACACCACAGGCCCTTGGGCATTTTTGTG s mm3.chr11 19062244 386 - 122862689 ATCTTCCGACATCTTGGATA--ACACAACACGCCCCCAC-------------------CCCCTGGAAGTC------------------CTTGGAGGATTCTGTTCGGGAGTGTTCTGGATCGGAGG-------------AGGCCTGTGGGCCTGCAGCT-CAGAGTTCTTCTCTGTA--------------------------------------------------------------------------------------------------GGCTAAAGCATTTTCAGCAGGACTTAACCTTCTGCCCCAACTAGCTCTATCACTTCTCTTGCTGGGCTGGAAGTGAGGGAATTCCTGAAGGAGGAG--------------GACCTACTACGTACCCAAGCCTGCCTACACAGCAGTGG----GTGCTCACATATCACATATCACGGGGAACTGGAGGAGGGGAGTACCCTTTCCTAGACAGA-------GACTGAAAACTAATTCTCTATGTC---------TAGCACAATG-----------CCAGGCCCTGGGGCATCATAG------GAGCTGTCCAACT s rn2.chr10 18666546 428 - 106208427 GTCTTCTTATGTCTTAGATA--ACACAACCCCCCCCCACACACAC------------ACTCCCAGAAGTC------------------CCTGGAGG-TGCCATCCAGGAGGGTTCTGGATTGGAGG-------------AGGCCAGTGGTCATGCAATT-CCGAGTTCCTTTCTGTGGGCTAAGGCAtttttttttttcttttttcggagctggggaccgaacccagggccttgcgcttgctgggctctaccactgagctaaatccccaaccccTGGCTAAGGCATTTTCAGCTGTACTT-ACCTTCTGTCCCATCCGTCTCT---ACTTCTCTTGCTGGACTGGAAGTGGGTGAATTCCTGATGCAGGAG--------------GACCTACT---TACCCAAGCCTGCTTAC--------------------------------------------------------------------------------------AAAACTGATTCTCTGTGTCTGGGCCTAGTAGCCCAGTGCCAGCCACACTCCAGGCCCTGGGGTGTCCCAG------GAGCTgtccagct a score=8090.000000 s hg15.chr22 14540273 76 + 49476972 TGGATCACCATGTCAAGCTTTCCCAATAGCAGTTGGTGGCAAACTCCAACTCCTACTGTCAGAAGGCAT------------------CACAAGG s mm3.chr11 19062854 93 - 122862689 cACCTTA-CATCCTCCAGGTTCCCAGAAGCACTTAAAGGCATACTCCAGCCCTTAGTGGCAGAAGGCGTGGGCTCAAGATCTGATAGCTCAAGC s rn2.chr10 18667199 93 - 106208427 cggcttg-catcccccatgtttccataagcatttaatggcagactccagatcttagtggcagaaggcatgtggtcaagacctgatatctcaggc a score=28723.000000 s hg15.chr22 14540349 438 + 49476972 CCCAGATATGCTGGGCCTCCCAG-CTCAGGCAAGCCCAGCTGTCAGGGACACAG---AAACCCCTGACACTGAGCCAAGATCTTTTCCCCCTGTCTTGGCTTGAAATTCAGATATATTGATGTTGAGCCCTCCTGGCCCGCAGTGGGA-CCCCCCTTAGCCTTACAGAGGTAATGCCTATATCATGGCCTAGGTTTTTCCAAAAAGCCAGACTCTGGGAAGAACCTGGAGTGGAGGAAAAAACCAGGCAGAGGTAACCCCATGAGGGGCTCTGGCATGTGACTCC-----CTGCTGGAAACGTG-------CCCCTAACAGGGCATCAAAGCCAGGCAGGCAGGGGCTCCTGCTCTGCCAGAGGCTGGAAATCAGGACT--GCAGCTTCCCATCTTACTCT-GGGGATGCAGGTCAACTATTTTCCCTCAGATGAGAGATGCTGAAGTTCCAATTTTA s mm3.chr11 19062947 361 - 122862689 CTCAAATGTTCCAGGGCATCCGGGTTCAAACAAATCCAG----TATGGACCCAATACAAACTATCCAGACT-ATCTGTGATTTCATACTCCTGAC-------------------------TGGTGAGCCCC-CTGGTCCCCGATGGGA-CTCCCTTTGACCTTTCCTAGGTAATGCCTATACT---GTTTATGTGTCTTC------------------AAGGCCCTGTAGTGAAAGGAAAAAAAAATTCAAAGTGG--GCAAGGGGGGACCCG----GTGACTCCGAGGGTTCCTGTATGCTTGTATGAGTCGCCCAACTGGAACTCTA---CAAGCAGACAGGGAC-TGTGCTCTGCCAGAGGGCACAG---AGGGCCCGGGGGCTTTCCATCCTACTGTCTGGCATCCAGGT------------CTCA-------------------CCATTTTTA s rn2.chr10 18667468 349 - 106208427 CTCAAATGTTTCAGGCCATCCGG-TTTGAACAAATCCAG----TATGGACCCAATACA---------GACT-ATCTACAATTT---ACTCCTGAC-------------------------TGGTGAGCCCCTCTGACCTCCAATGGGGGCTCCCTTTGACCTTGCTCAGATAATGCCCATACT---GCTTATGTGTTTTC------------------AAGGCCCTGTAGTGAAAGGGGAAAAAAATG-AAAGTAG--GCAAGGGGGAACACG----GTGACTCCGAGGGTTCCTGGCTGCTTGTATGAGTCACCCAACTGGAGCTCTG---CAAGCAGACAGGGAC-CTCGCTCTGCCAGAGGGTACAG---AGGGCCCAAGGGCTTTCCACCGTACTTTCTGACATCCAGGT------------CTAA-------------------CCATTTTTA a score=125789.000000 s hg15.chr22 14540787 1066 + 49476972 TAAGATGAGAAGAAGGGCTGAGGTGATGCCCATTCTG-CCACTTTGCTGAGTCCAGAGCTGTGATGAAGAGGGAGAAGTCACAGGACAAAGAAGGGGGCTCAGGGACCCCGGAGTTTTCCTTGGCAGAAGTCAACTTGCCCCGCCCCTGAGAAAACTCTGACCTCAGCTGCCAGGGAGGAA-AGCAGGGACTGG------------GGAGGAGGG---------GACAAGGAGAGGGAATAGTCTGGTGCT---CTGTGCTCTGGGAGAGAAGTCTGATGGCGGCAGTGACTCAGGAAGGGTTAAGAATATTCCTAAAATAGCCAAGCCACAGCCTAAGCCAGTTCATGAATGCCTCTTCCAGAGAGCA--GATCAGTAGCAGGAAAATTCAGCCTGATCTTCGCCCCACTGCCTGCCGCCTGCCCCTGGCTACTAGTTA-------AGCCTCCCACCCTGTCCCCTT-CACCAACTC---CTGTCCTAGT--GGGGATGGGGTAGGAGTAGTCAGAGGGGCCAAATCTCC----CCCAGTCAACAGGGAACTCCAGCTGGGACCAGGAGTACTGGGCCCCAGTGCCCGCCACCACCCCCCACCCCCATCCACATTCCTGGTCTGAGTCAGGTAGGAGGACTTGGGACAGACAGGCAAAGTGCAGGCCTTGTACATGGGATGGAAGGTGCCAGAAGAGAGCAGCCAAATTCTCCCACCCACACACATGCATCACCAGCCATGATCAGGTGGGACCTCCAAGATCATCCTCAAATACTGCCTTCTCCTAGCTCTGTGT-TCCCCTTTACTTAGGGCATCTTGGAGTGAGAT--GGGCAGGGAGGGGTCGAGTGAGTCCCTTCATGAACAAACCTTATCTTTGTTTCAGGG-Acaggactgggtacataatttgcaggacccggtgctaactgaaaatgtggagtctgttcaaaaattgttaagaatttgaaggcagtgacaacatagcactaaaccaagtt-----caggtcccctctgacagtggggcttttgccactgcacaggtgg----cacctctatgaagccagccttgTGCAGGGGTTTGGTTTAATGAACATTTACTTAGCGCCCACTGCTCAGCTC s mm3.chr11 19063376 1043 - 122862689 TAATAAGACAAGAAGAGCTGAGAAAATTCTCAAAGAGATCACTCTCTGTAGTCTAGAACTTC---------AGATAGGT-AAAGCACAGAGAGT-GGGATCA-GGAGCCAGGAGTTTTCTTTGGTAAAAGTCAAA---CCTTGACCTT--------------CTCAACTTGTAGGGAGGAAGAGCAGAGGCTAGGTGG--------GGTGCAGGGCGGG-----GGCAGAAAGGAGGGGCAATCTGGAGCTGGCCTGTGTTCTGGGAGAGAGATCTGGCAATGGCAGCGGTTCTGGAAGGGTTAAGAATATTCCTAAAATAGCTGAGCCAGAGCCCAAAGCAGCCGGCTAGTGCCTCTCCCAGAGAGCATGGATCTATAGCAGGGAAAGCCAGCCTACTCTGCACCCCACCGCCTGCTGCCTGGCAC-GGCTGCTAATTAATCTCACAGCACCCCACCATACACACTCACACCAACCCCTTCTATCCCAGCAGGAGGCCAAGGGAAGAGAAAGCAGAGGGGTTATATCATATTTCCCCAAAGGACAGGAAAGCCTAGCTGGGACCGAGAGT-CTGATGTCCAGTGGCC----CCATTTCATGTC--------TGCCCCTGGCCTTGGGCTAGGAGTGGAAC-----ACAGGCAGTCACAATGCA----------ATGAGCTTGTAGCTGACAGAGCACTGT-GTCAAGTTCTCCCA-----ATATATACATGGTCAGCCATGGTA-GGTGGAGATTCCAGGAAGCTCACTAAACACCAGTTTTTCTTAGACCTGTGT-CCCCCTCCACTT-TGGCATATTGGGGTGGTGTTGGAGCAGGGAAGGGACAATGAAGTCTCTCCAAGATGAAACTATATTTCTACCTTAGGGAGAAGGACAAGCCAGGCTCtttgcagagcctagtgggaaatgaaaacatcacattggttcaaaaatgggtagggatttcagggtggcaagaacagagcatcaaatgaaattcaagccaagtctattctgaatgccaggcttacatgactgcacagacttcattcatgtccatgaaggcatccctgTTTAGGGGTAC-ATTTAATGGACATGGACTATGTACCCATTGCTCAGCTC s rn2.chr10 18667885 1035 - 106208427 TAATAAGATGAGAAGAACTGAGAAAATTCTCAAAGAGATCACTCTCTGCAGTCCAGAACTTC---------AGATAGG--AAAATGCAGAGAACAGGGTTCA-GAAGCCAGGAGTTTTCTTTGGCAAAAGTCAAC---CCTGACCCTT--------------CTCACCTTGTAGGGAGAAAGAACGGAGGCTCGGGGGCGGGGATGGGAGGAGGGCTGGTGGTGGACAGAAAG-AGGGACAATCTGGAGCTGGCCTGTGTTCTGGACGAGAGATCTGGCAATGGCAGTGGTTCTGGAAGGGTTAAGAATATTCCTAAAATAGCTGAGCCAGAGCCCAAAGCAGCCAGCTAGTGCCTTTCCCAGAGAGCATGGATCTATAGCAGGGGGAGCCAGCCTACTCTGCACCCCACCGCCTGCTGCCTGGCAT-GCCTGCTAATTAATCTCCCAGCACCCCACCATACACACACACACCAACCCCTTCTATCCCAGCAGGAGGCCAAGGGAGGAGAAAGCAGAGGGGTTATATCTCATTT-CCCAAAGGACAGAAAACTCCAGCTGGGACCCGGAGT-CTGTTGTCCAGTGCCC----CCATTTCATG----------TGCCCCTGGCCTTAGGCTAGGGGTGGAAC-----ATGGGCAGTCACAATGCAG----TG---ATGAGCTTGAAGCTAACAGAACACTGT-GTCGAGTTCTCCCA-------GCATACATGGTCAGCCACGATAGGGTGGAGACCCCAGGAAGCTCACTAAACACCAGTTTTTCTTAGATATGTGTCCCCCCTCCACTT-TTGCATATTGGGGTGGTGTTGGGGCAGGGAGGGAACAGTGGAGTCTCTCCGGGATGAAAC--TATTCCTGCTATAGGG-GAaggaccagccagactctttgcag-----agtgggaaatgaaaacatcgcattggtttaaaaactggttgggatttcagggtggt--gaaaagagcatcaaacgaaattcaagtcaagcctattctgaatgcggggctcacaccgctgcacagactt----------catgaaggcatccttgTTTAGGGCTCC-AATTAATGACCATGTACTATGTACCCATTGCTCAGATC a score=84636.000000 s hg15.chr22 14544458 852 + 49476972 ATATTTTTGTTTCTCTGATTTAGGTAAAATACCTCTTTTCTGACAAGACTAGGACTCTTACATAGACTACCATGAACTAAAAGAAGCACAACATTGCCAGAGTAACCTGT-GGTACGTGTATTAATCACTTACTGAACATTTTACTTGCATTCTTTCAAGAAAATGAGTTTATTTTTAGATACTTAGTCAAATTATCTTGACTCTCTGATGTTTTTAAAGAGTATTTATAATAGATTTAGTTATTTCATTAATATTGAATGTATTTAAAACTA--AATGCATCCCAAAGGAAA---CTGAACAGTTAAAACATGGTTTATTTCTGCAAATATTAACTTAGTGAGAAATCCCAGGGAATCTGCACATTTGTGTTTTCTATCTAACAATCATGAATTTCTTAGTGTATGTTTTGA-TCAGGCTGTCTTTTGATCACAGTTTTGTGACCACTCTGTTATTCCTCTCTCTCTGGCAGTCATTTCCCAGAATTGACAAGGAATTCATCCTGAGATGATTTCTGCTAAGTAAATCCTAGCACTTCTTGACACTTTAGAAAAGGCTTTGGAATAATTTTATATTAGCATTTTTCACCTGCATATTTTTACATGTAAATATAAGCTGTGAATGCATTACTTTGAAAGAGAGCCAGGATAAAATTTAAAG--AAacatggttttagaagtccaatggtagtataagatttcacaaagaaacagactgctcttcattcagtacttcctatttactccccagacacagccaacttcaacattttttacttaaaaaat-gtatttttatatttcaaaataaca----------tgttta----------------tgtGACCT-----GTC---------TCTCACCCATCCTGCCCTACTCTGGCT------TTACCCC s mm3.chr14 65177233 780 - 115844145 ATTTTGTTTATTCTTTG-CTTAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGGTGAGTATGTTTGCCAACTTCGGGAGACCCCATTCCTAGTCTTCCAACAAAGCATGGTT--------------------GTTATTTTGTTGTGTTGAGG----------------------GATTTGGATGTGTGGTTGCTATTAAATATGTTAAAGGAAAA-AGTGGGTTCCCCAGTGAATCTTTAAACAGCTAAAATATGACTTGTCTCTTCAACA------TTGCTGAGAGGTCCCAGGGCACCTGTGGATTTGTACACATACTCTAAGAATTACTCATTCTC-----TGTGTTTGGATTCA-------------------TCTCCTGACTACTCGTTTTTTTC-------CTGCCAGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGGTAAGTAAAGTCTAGCATGTCTTACAACA-TAG--------TGGGGACA-------------------CATCAGGATAGTCTTAAGTCTAAATATAAATTGTGAATATGTTAGTCTGAAAAAGAGCCAGGATAAGGTTTAAATTCAGATGGGGTTT---AAATCCA----CACCACAGAGCTTGTAACATCAACAGCCTGACTTCTGTCCAGCCCTTCCCATTT-----------ACAGCCACCTGCAAC-ttttttacttattttttaaaaattctatatttcaaaataatattttttaCACTATTTAAAAACTATAGACACTGTAGGGCTTTGTACATCTGGGGAAGATCCGGCTCTCTCTGCTCTGGTGTGGCCAGCCCACTACCCC s rn2.chr15 60260076 768 - 99209255 ATTTTGTTCATTTTTTG-CTTAGGTAAAATACCTGTTTTCTGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGGTGAGTATGTTTGTCATCTTCGGGAGACCCCGTTCCTAGTCTTCCGACAAAGTGTGGTG--------------------GTTATTTTGTTCTTTTGAGG----------------------AATTTGTATGTGTGGTTGCTATTAAACATGTTAAAGAAAACTAGTGGGTTCCCCAGTGAATCTTTAAACAGCTGAAATACCACTTGTTTCTTCAACT------TTACTGAGATGTCCCAGGGCACCTGTGGATTTGTACACATAGTCTAAGAATTGCCCATTTCC-----CGTGTTTGGA-TCA-------------------TCTCCTGACCACTCAGTTTTTCC-------TTGCCAGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGGTAAGTAGAGTCTAGCATGTCTTACAACATTAG--------TGGGGATA-------------------CGTCAGGATGGTCTTAAGTCTAAATATAAATTGTGAATACATTAGTTTGAAAGAGATGCAGAGTAAGGTTTAAATTCAGACATAGTTT---GAACCCA----CACCACAGAGCTTTCAACACCAACAGCGTGTCCT-TGTCCAGTCCTTCCTATTT-----------ACAGCCACCTGCAAC-ATTCTTGCTTATGTTTT-TAATCTCTGTATTTCAAAATAACA--TTTTATACTATTTAAAAACTA---------TAGGGCTTTGTACATCCGGGGAAGATTCAGCTCCCTCTGCTCTTCTGTAGCCAGTCTGACATCCC a score=3364.000000 s hg15.chr22 14545310 451 + 49476972 C-------------------TTCAGAATATTTAAAATTTCTTGAGTATCCTTAGCATATACCATTCcaatcatgaatcttggggtaggcttattttttttttaat-ttgtgcatttaataaac-ccctagtggtacatgtctg---------tttttcttgttaat-tcttggaaatgtctttctattgtttctacaataattttcttcccctctagcttccctttttcttctggatctcgttaggta-----ttgaacctcttgagttgattttctaatttttgtcatctccctctctcattttttgtattttgtgtttaattttctggtatctaattcaccttgattttctatctttctggtgatattttcatatgctgtcaCTCTTACAGTTGTCAAACGCCTTCTCCTGACCTTGCCCTTGTgttctgtttactctgcccacctcttcgattctccccattgctacctggtgttttggtttct s mm3.chr14 65178013 378 - 115844145 CAGGCCATCTTCCCAGTCCTTTGAAAATATTT---ACTTTCTGTATTTCTTTAGCAGATGAACTTTTAACTGTG-ACCTTGGGGTAGGCTGTTTTTCTTCATCATGTTGGGTAGCTAATTTACTTTTTACTAGGACACATCTGTCTTATAAATTTCTCTCATTGATATTTGGGAAACATCCTTGTATTATTTC----------------------------------------------AGTTAGGTAGATAGTTGGGC--TTTGAGTTGATCCTCTGG-TTTTGTCATCTCGCTCTTCCCTTCTCCATG---------CGGGTCTCCTGCATTT--TTAACC-----TTTCTTCCTCCTTAGCA--ATTTTTATGCACACTCACTTCTAT--TTCTCAGGAGCACACTCCAGTTCTTGCTCTTA------------TCTGCCCATTTCC------------------------TGTTCTGTTTCCT a score=1102.000000 s hg15.chr22 14546048 68 + 49476972 ttggcttcttaattttgttttataagctttcttcaaaggcctggtcatcatttgctgtgtgtttatat s mm3.chr14 65178391 61 - 115844145 ATGTC----CAA---CACCTTATAGATTTTCATTGAAAACTTGGTGAGCACTGGATGTGTGCTCATGT a score=61674.000000 s hg15.chr22 14551168 536 + 49476972 AAGGCTGCCTAGGCCAGTGCAGTCCAGTAAATCCCTCTTTAATCTTCTTTTCCACACAGACAGCAGTGATGAGCATGCCCACGAACCCACATGATTATTTTGGG------------AAAAATGAAA--GAGTTGTATTCTTTTTGTGGTAGTAATTCCACTTCCAGGGGCAAATACATTTTGATTATTTTATCACCTTTCAGTGAGTT-GTTTTTGTTCTTTAACCAAGGATGTATGTTTGAGGTAAGAAGTAAAGCATAAAGTATATGATTTTTTGTGTGTATTTTTATCTTGCTATACCCATAGGGAATGTTTAATTCTGCCTTGGAAGTGGCCATATTTGAAGGTGCTGTGATTCAAACTGTCAGCGAGATAAGGCAGCAGATCAAGAAAGCACTCCGGGCTCCAGAAGGAGCCTTCCAGGCCAGCTTTGAGCATAAGCTGCTGATGAGCAGTGAGTGTCTTGAGTAG--TGTTCAGGGCAGCATGTTACCATTCATGCTTGACTTCTAGCCAGTG-TGACGAGAGGCTGGAGTCAGGTCTCTAGAGAGTT s mm3.chr6 30885768 469 - 149950539 AAGGTTGTCTAGGCCACTTCACACCTGTAAATCCCTCT------TCCTCTTATAATGAGCTACCAGTAATTAGCCTACTGATGAGCTCAGAGAAAGGTTTTAAATGTTAGTTAAGTGAAAATAAAGTTGAGCAGTATATTTTTTGATGT---------AATTTCA------------------------------CTGTTAGTGAGTTGGTTTTAGTTTTTTAAGCAAAGCTATAAGT--------------AAAGCATG-------------TCTGTGAGT--TTTTATTTTGT--TGCCTGTAGGGAATGTTTAATTCTGCATTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGAATAAGGGGACAGATCAAGAAAGCACTCCGGGCTCCCGAAGGAGCCTTCCGCGCTAGCTTTGAGGACAAGTTGCTAATGAGTGGTAAGGATCTTTTGTGGTTTGTTCAGGATACTGTTTTACCATTCATTATTGA-GTCTAGCTGCTGCTGATTAGAG--TGGGTT------TTCAGAAGGCC s rn2.chr4 31852757 454 - 183307734 GAGATTGTCCAGGCCAGTTCCCACCTGTAAATCCCTCT------TTCCT-------------CCTGTAACAAGCATGCAGATGAGCTCATAGAGAGGTTTTGAATGTTA-----------ATGAAGTTGAACCTTATATTTTTTGATGT---------ACTTTCA------------------------------CTTTTAGTGAATTGGTTTTTGATTTTTAAGCAAAGCTGTGAGT-----------GGTAATGCATG-------------TCTGTGAGTGTTTTTATTTCTT--TGCCTGTAGGGAATGTTTAATTCTGCGTTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGAATAAGGGGACAGATCAAGAAAGCACTCCGGGCTCCAGAAGGGGCCTTCCGCGCTAGCTTTGAGGACAAGTTGCTAATGAGTGGTAAGGATCCTTTGTGGTGTGTTCAGGACACTG--TTACCATTCATTATTGA-GTCCAGCTGCTGCTGATTAGAG--TGGGTTTTCATATTCAGAAGGCC a score=15811.000000 s hg15.chr22 14551704 890 + 49476972 GAGCAGCTCCAGCCTTAGATCTCCCAGTC------TTATGCGGTGTGCCCATTCGCTTTGTGTCTGCAGTCCCCTGG--CCACACCCAGTAACAGTTCTGGGATCT---ATGGGAGTAGCTTCCTTAGTGAGCTTTCCCTTCAAATACTTTGCAACCAGGTAGAGAATTTTGGAGTGAAGGTTTTGTTCTTCGTTTCTTCACAATATGGATATGCATCTTCTTTTGAAAATGTTAAAGTAAATTACCTCTCTTTTCAGATACTGTCTTCATGCGAACTTGGTATCCTGTTTCCATCCCAGCCTTCTATAACCCAGTAACATCTTTTTTGAAACCAGTGGGTGAGAAAGACACCTGGTCAGGAACGCGGACCACAGGACAACTCAGGCTCACCCACGGCATCAGACTAAAGGCAAACAAGGACTC--TGTATAAAGTACCGGTGGCATGTGTATTAGTGGAGATGCAGCCT-------GTGCTCTGCAGACAGG---------------------------GAGTCACACAGACACTTTTCTATAATTTC-TTAAGTGCTTTGAATGTTCAAGTAGAAAGTCTAACATTAAATTTGA-TTGAACAATTGTATATTCATGGAATATTTTGGAACGGAATACCAAAAAATGGCAATAGTGGTTCTTTCTGGA-TGGAAGACAAACTTTTCTTGTTTAaaataaattttattttatatatttgaggttgaccacatgaccttaaggatacatatagacagtaaactggttactacagtgaagcaaattaacatatctaccatcgtacatagttacatttttttgtgtgacaggaacagctaaaatctacgtatttaacaaaaatcctaaagacaatacatttttattaactatagccctcatgatgtacattagatctct----------aacttgatcatcctatatgtctgc s mm3.chr6 30886237 839 - 149950539 GGGCAGCTCCATCTCTG-----TCCAGTTGGAATGTCCTGTACTTAGCTGGCTCACATTGTTTGTGCTGGC---TGGGCTCACACCCAG----ATCTTTGTGATATTTAATCATAGTCAGTATCACAGTCTGTTAAGTGTT--GATACTGTTTAATCAGGTAGAGG-TGTCGGGGTGA-------------------TTTGGAATGTG----TGCAT----TGCTTGAGATACAAAGCTTGTGAACCTTTTCTTCTAGATATTGTTTTCATGCGAACTTGGTACCCTGTCTCCATTCCGGCCTTCTACAATCCAGTAACATCTTTGTTGAAACCAGTGGGTGAGAAGGATACCTGGTCAGGGATGCGGACAACACATCAGCTGAGGCTTGCCCATGGAATCAAGTTAAAGGCAAACAAGGATTCCTTGTATAAGGTAAAGGTCACGAGTGTCTGTGTTTCTAGACAGCGTCCTACAGGTGCTTTACGTGTGAAATTTTGGTTTTTATGGTGCTTTGCTCTGAGCCAGCCCACCAGTTTGGAATGACTCCTTTTTATGACTTGAATTTTCAAGTATAAAGTCTAGTGCTAAATTTAATTTGAACAACTGTATAGTTTTTGCTGGTTGGGGGAAGGAA----AAAAAATGGTGGCAGTGTTTTTTTCAGAATTAGAAG----------------TGAAATGAA---AACTTGTTGTGTGTGAGGAT----------TTCTAATGACATGTGGTGGTTGCATACTG--------AGTGAAGCCGGTGAGCAT-TCTGCCAT--------GTCACCCCCTCGTGCTCAGTA----------------ATGTACTTTACAGAAATCCTAAACTCAAAAGATTGATATAAACCATG---CTTCTTGTGTATATCCGGTCTCTTCTCTGGGTAGTCTCACTCAGCCTGCATTTCTGC a score=14080.000000 s hg15.chr22 14564797 165 + 49476972 AGCTCCATCTTGCTTAGATCTCCTTATTGCTCAGAGTTTCATCTGCTCTGAGCACCATCTTGTTCAGAGCTCCATCTTGCTCAGAGTTCCAACTGCTCAGAGAACTGTTGAGAGTTCCAACGACTCC-AAGCTTTATCTTGCTCTGGGCTCCATCTTACACAGAGG s mm3.chrX 65986779 154 - 149996094 AGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTCCCTGGAGCACCACCTTCTCTGGAGCACCATCTTCTCTGGAGCACCACCTTCTCTG-----------GAGCACC-ACCTCCCTGGAGCACCACCTTCTCTGGAGCACCATATTCTCTGGAGC s rn2.chrX 115109498 134 - 133900917 AGCACCACCTTCTCTGGAGCACCA----------------ACCTCTCTGGAGCACCACCTTCTCTGGAGCACCACCTTCTCTGGAGCACCAACCTCTCTG-----------GAGCACCAACCTCTCTGGAGCACCACCTTCTCTGGAGCACCA-----TCTGGAGC a score=462.000000 s hg15.chr22 14564962 27 + 49476972 AACATCGGCTCC-AAGCTCCATCTTGCT s mm3.chrX 65986933 28 - 149996094 ACCACCTTCTCTGGAGCACCACCTTCCC a score=15951.000000 s hg15.chr22 14564989 175 + 49476972 TGGAGCTCCTTC--TTGTCTGAGCTATATTTGCTCTGAGCTGGACACTCCATGCTCCATGGTGCTCTGAGTTCCATCTGCTAAGAGCTCCATCTGCTCC-AAGCTCCATCTTGCTTGGAGCTCCAATCACTCC-AAGCTCCATCTTGCTCTGAGCACCATCTGTTCT-GAGCTCCACCTT s mm3.chrX 65986961 149 - 149996094 TGGAGCACCACC--TCCCTGGAGCACCATCTTCCCTGGA------GCACCATCTTCCCTG-----------------------GAGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTTCTCTGGAGCACCATCTT s rn2.chrX 115109478 150 - 133900917 TGGAG-ACCACCCTTCTCTGGAGCACCACCTTCTCTGGA------GCACCAACCTCTCTG-----------------------GAGCACCACCTTCTCTGGAGCACCACCTTCTCTGGAGCACCAACCTCTCTGGAGCACCAACCTCTCTGGAGCACCACCTTCTCTGGAGCACCATCTG a score=22912.000000 s hg15.chr22 14565851 175 + 49476972 TGTTTGTTCACAGACTGTTACCACCTGTGGGTCATTTGACGGGAGGTGACCTCACACAGCAATGCACCAGGCAAATCACCAACTGAAAGAATCACTGAAACAACATGTGTCTGCTTA------TTTCAAAGAATGAATAGGAGTCAGTTGAAGGTGATTAAGTCAGCAACATCT-TAAG-----GTG s mm3.chr1 185632648 179 - 195869683 TGTCTGTTT-CAGAAACTTATTGCTTATGGG-CACTTGACTGGCAGGG-CTCCAGATAGTACGACACCAGGCAAAAAATTAATTGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGTTCAGTTGCAGATAATAAAGGTAATGAATTATATAAG-----GTG s rn2.chr5 10510785 180 + 191625135 TGTCTGTTT-CAGAAACTTATTGCTTATGGG-CACTTGACTGGCAGTG-CTCCAGATAGTACGACACCAGGCAAAAAGTTAATTGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGCCCTCAAACAGATGAAGGAGTTCAGTTGCAGATAATAAAGGTAAT----TATATAAAAATCAGTG a score=24571.000000 s hg15.chr22 14566035 147 + 49476972 CAGTAACAT-------CTTAGATGACCAAGAATAATCT----TGTGGGCCCCAAGAACATATGACAATATGGACTACGCCAGCAAAAATCTCACCCATCAGACAACAGCAAATGACACTGTGGCTCAAATGTTAAATGTCCTCTCTTGATGTGTGAAA s mm3.chr1 185633721 158 - 195869683 CAGTGACATCACAACACATAGAAATCCATGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAATCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAAATGCTGAACGTTATCTTTGCACGCATGGAA s rn2.chr5 10511822 158 + 191625135 CAGTAACATCACAACACATAGAAATTCACGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAATCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAGATGCTAAATGTTATCTTTGCACGCATGGAA a score=7364.000000 s hg15.chr22 14584347 620 + 49476972 TGACCCAGGGTCCTGGAGGAAGGGATGAGGTGGGCAGTAGAGATGCTCAGGG--CAGTG-GCCCCTTTCCATCCACACTGGAACTATTTCAATATTTTACCACCAATTCAGCCATTCCCTTGTGCGCTGGCTGAACATCAGCCCTGCTCCAGGTCTCAGTTT-CCCCTTTGTAAAGGGAAAGCTCTGGATTCAGGAGTGATGAGAGGTCATCATGGTCTTGAGATTCCAGG