##maf version=1 scoring=multiz a score=88436.000000 s hg15.chr22 14435061 686 + 49476972 TCAGTGGAGCTGGCAATCTGACGATGCCTCTCTTTGGACCCTGGCCTTCAGCCTCTTCAGGCCATGGTGATCGGGGTCCACCAGGAGAAAGATCTCGGCTGTCATCCAAGCCTCTGTGTAGCACTGCTCCTCCAGGCAGCATTGTCCATGACACAGAAACACCTGTACTGTTGGGGCCCGGC------------ACAGGCTATTCTCGGCCAAAGTGAGCCCCAGCTTAAGGGCCTGGGCAAAGGCCTCTTTGCCCTCA-CCTTGTCCTTCAGGCTCAGCAGCAGGCAACCCCAATTGCAGAAGTC-TCTATCCATCTTGGGAGGTTGTCATCCCCTGAACCTTCCTAGAGCACATTGTCCAGGCCCCCAAAGCCTC---CAAACTCATGCAGTTTGATCAGGCAG----CCAGCAGATGCAGGTGACAGGCACTGTTGCCACCAGCCAGGATGGCCAGTAGTCAGTAGCCCAGTGCCCTTCCCAGGATGCCCTGCATCCAGGAGGGCCTTGGCTTCCTGGGCTGTGGCTTGCACAGAGGACACAGAAGGAGGG--AGGGAACATAGGGTTAGCCCAGAAAGTCCATCATTCCCTCACTTCCAGAGCTCCTCTCTACAGCCAGCCTCTGCTGGCTCCCTGGGGAGGGTGGACTCCTGGGCTGCAGAGGGGCTGCCCACTTCTTCCAGAGGGCCTGGCCATGGGTGAGGG s mm3.chr4 1406986 656 - 152921959 TTAGTGTAGTCTGCAGCCAGAGGTGGCCACCTTGCGAGTTCTCAGCTTCAGTTTCTTTAGCCCACTGTGGCTGGGGTCCACTAGGAGTCCATTCTGGACTGCTGTCCAGGCCTCCTCAAAGTGCTCCTCCTCTAGACAGCGCTGGCCATGGATCAGGAACACACTGGCTGTCATGGCCTGGCCTGGTTGCTCCAACAGGCTGTTTTGAGCCTGGGCTGGTGCCAGGGCCAAAGCCTGGGTAAAGGCCCCTGCGGCTCCATCCTTATCCCCCAGGCTCAGAAGCAGTCGACCCCGGGTGCAGAAATCTTCCGACTGTCTTGGCAGGTCGCTGTCCTCTGCAGGGTGCTGCAGCACCCGGTCCAGGTCCCTGAGTGCCCTGTCATACTCCTGCAGCTGGGTCAAGCAGGCCACCCGGAGACGCAGATGGTAAGGATTGTTGCCCCCAGCCAGGATGGCCAAAGAACAGTAGCTTAGTG-CCTGCCCCGGATTCCCTAAATCCAAGATGTTGCTTGCTTCCTTGGCAGCGGTCTGTGAAGGGGACAC------AGGGAAAAAGAGCGCAGAGTGA--------------------------------AGTCTGTGGACATAGTCAGCCTCTGCTGGTGTCT-----------GGTCCTCGCCCTGTGCAGAAGACACCCACACTCT---GGAGGCCTGGTCATGGGTAGGGG s rn2.chr5 3230941 646 - 191625135 TTAGTGTAGTCTGCAGCCAGAGGCCGCCTCCTTGCGAGTCCTCAGCTTCAATTTCTTTAGCCCACTGTGGCTGGGGTCCACCAGGAGTCCATTCCGGACTGCTGTCCAGGCCTCCTCAAAGTGCTGTTTCTCTAGGCAGCGCTGGCCATGGATCAGGAACACACTGGCTGTCGTGGCCCGGCCTGGTTGCTCCAACAGGCTGCTTTGAGCTTGGGCTGGTGCCAGGGCCAAAGCTTGGGTGAAGGCCCCCGCGGCTCCATCCTTATCGCCCAGGCTCAGAAGCAGGCGACCCCGGGTGCAGAGATCCTCTGTCCGTCTCGGCAGGTCGCTGTCCTCTGTAGGCTGATACAGCACCCGGTCCAGGTCCCTGAGTGCCCGGTCATACTCCTGCAGCTGGGTCAAGCAGGCCATTCGGAGACGCAGGTGGTAAGGACTGCTGCCTCCCGCCAGGATGGCCAAAGAACAGTAGCTCAGTG-CCTGCCCCGGATTCCCTAAATCCAAGAGGTTGCTTGCTTCCTTGGCAGCGGTCTGAGAAGGGGACAC------AGGG--AAAGAGCTCAGAGTT---------------------------------AGTCTCTGGGCACAGCCAGTCTCTGCCGATGTCT-----------GGTTCCCTCCCTCTGCAG-AGACGCCCACACTCT---GGAGGCTTGGTCGTGGA------ a score=32452.000000 s hg15.chr22 14436420 601 + 49476972 CCAAAGGCTGTTGCTGGCCAGACCTGCCCACCTCCCCTCTGAC-CTGCAGGCAC-----TTGCCTTTTCAGAGTCATATTTGAATCCTACTCTTCACATCAGGGTTCAGGCAGCTGTCCAAACACCTTATCTTTTCATCTCTGACCATTTCTTCAGAGTCGACTATGAGCAGAAATCACCCAGACACCCCACAGGTAAGTCCACTTGCCTCACATGGCTCTTCCTCTTGTCAAGAACCTACAAGGGCTCC-CAGTGCCTGAGGAATAAGGTCCACTGGAGACCCTGCCTTTCTTGCTGCCCCTCTCACCCTCTT----CTCCAGGCAGCCAGGCAATCCTCAACACTC----CTC------CCCTCA------AGGAAAGCACACTGCACCCCAGGATTCTGCAGGGGTGCTGCTGTAGGGAGCAAACCACACA------CCACTGAGGCCCGCTTTCCCTGCT-GAGGGG--GGGGCGTCCCAGGGCCCCACACAGGTCCAGGGTCCTGGCACTTTGCTACTGGGCTCCTGCGGGGAACAGTAATGGTCTCTTCC--CACCAGCCTGTGAGCAGCAAAAaggca-----------ggactggg----------------------------------------------------------------tcttgaacccagtctcc---ctccttgctgtgtaaccctgcgtgagctt s mm3.chr4 1407666 535 - 152921959 CTGAGGGCTGCGGCTGGCCCAGCATGTCCACCTCCCCATAGTCCCTGAAGGCAACGTTGTTTCCCGAGCAGAGGCAGGTTTGCACCC----------------------GAAGTTG-CTAAGCATCTTCATCTCCCCTCCCTGATCCTGTTTCTCTAGGCCACTATGAAGGCAGGCAACTTCATCTCATCA----TAAATTCGTTAGACTCACAGAATTCCTCCTCTGCTCAATAACCTACAACGGTTCCACAGAACCTGAG----ATGGGCCTCTGG-------------------GTCCCTCCCTCCCCCTTTTAACTGCATCCAGTCTCACAGCATACAACACCATAAACTCTAAAG-CCTTCAGAGGCAGGTAAAGCTCCGAGCATCCCGGGCC------GAGTCACTCCTATAGGGGATAAACACCACA------------------GATGTTTTTGCTAGGAGGGCTGAAGGGTTCTGGGGGCCTATAGGG--AGAGGACC---------TGCT------TTCCAGCATGGA-TTGCAGTGCCATCTCCCGACACTAGACTGAAGGCTC---------------------GCACATGA--------------------------------------------------------------------GCACCCGCTTTTCTTGTTCCCTGCTGTGTGACCCTGCCAGAGCCT s rn2.chr5 3231599 627 - 191625135 CTGAGGGCTGCAGCTGGTCTAGCAAGTCGGCCTCCCCTTAGTCTCTG--GGCAACATTGTTTCCAGAGCAGAGGCAGGT-----CCC------------------------------CTAAGCATCT-----CCTCTTTCCTGATGCTGTTTCTCTAGGCCACTGTGAAGACAGGCAACTCCATCTCATCA----AAAGTTTGTTAGACTCACACGATTCCTCCCCTGCTCAATAACCTACATTGGTTCCACAGAACCTAAG----ATGGACCTCTGG-------------------GTCCCTCCTTTCCCCTTTTAACTGTATCCAGCCTCACAGCACACAACACCCTAAACTCTAAAATCCTTCAGTTGGGGGTAAAGCTCAGAGCATTCCGGGCTTGT-CAGAGTCACTCCTACAGGGGGCAAACACCACAGGACAGTTGCTTAGGTCGGATGTTTTTGCT-GAAGGGCTGGGGGG--AGGGCGGGCTATAGGGACAGAGGACC---------TGCT------TTCTAGCACGGG--TGCAGTGCCACCTCCCAGAACTAGACTGGAGGCTCCCAGGGAGGGCTCTGAGGCTAACACAAGAGCACCTGCTTTTTTTTATATATTtggttgtgagcctagcctttaacggctgagccatctctccagcccGCACCTGCTTTTCTTGTTCCCTGCTGTGCGACCCTGTAAGAGCTT a score=12490.000000 s hg15.chr22 14437173 132 + 49476972 AGCAGAGCAGCATGGGGGGAAGCAGCCCTGGGCCCCCTGAAGTCCTAGGTGGGCAAACACAGACTACAGAGGGAGCTCCCTTTTCAGATTAGTGGTGAAATGGTATCACATCAC-CAGGAGGGTGTAGAAATC s mm3.chr4 1410834 113 - 152921959 AGCAGAGC----TGAGAGGCAGC---------CCCCCTGAATTCTTTGGAGGGCAAAGGAAGGTTACAGAGAG------CCCTTCAAACAAG-GGCGTCAGAGACCCACATGGCACAAGTGGATGTACAAATC s rn2.chr5 3234865 115 - 191625135 AGCAGAGC----TGTGGGGTAG----------TCCCCGGAAGTCTTTGGAGGGCAAAGGCAGGATGCAGAGAG---CATCCCTTCAAACAAG-GGTGACAGAGACCCACACGCCACAAGCGAATGTACAAATC a score=24599.000000 s hg15.chr22 14437568 238 + 49476972 CAGGGAGTTTGGA-------GTGGAAGGGACGTGAGAAGCTGTCCTGGTCTAAGT-ATCTTTCTCCCATTTTACATAAAGGAATACACAGTGTCAGAAGGAGGACCTGTGTCCAGCCCCTGTGTTCCCCACTCCTGGGCAGATGCGTACCCAGTGCAGCGAGAATGTCTGCGAGGGGGACTTGTCAGCTCCACTGCTCAGCACTGATTTTGATCAGCATTTCCCCAGTGGCAAAGAGGCACTTAAt s mm3.chr4 1411211 223 - 152921959 CACAGGGGTTGGA-------GGATTTGGGGTGTTAGAAGCCA---TAGTCCAGAG-TTCCTTCT-CCACTTCACAGGGAGAAACACTAAGGGTTGG-----GAATGTGGCACAGAGACCCATGTCCCCTGCCCTT------ACACACACCCAGTCCTGTAAGGATGTCTGTGAGAAGCAGGCGCCAACTGGGCTGTGTAGCATTTATTCTAATCAGTGCCTTCCCCATGGCAAGGAGGCCTTGAGT s rn2.chr5 3235364 231 - 191625135 CACAGGGGTTGGAAATTACAGGATTTGGAGCCTTAGAAGTTA---CAGTCCAGAGGCTCTTTCT-CCACTTCACAGAGAATAGTACAGAGGGTACG-----GAATGTGGGACAGGGGCCCATATCCCCTGCTCTT------ACACATACCCAGCCCTGTGAGGATGTCTGTGAGAAGCAAGTGCCAACTGCTCTGTGCAGCATTGATTCTAATCAGTGCCTCCCCCGTGGCCAGGAGGCCCTGGGT a score=16788.000000 s hg15.chr22 14456041 145 + 49476972 ----GTCTGCCTACCCTGCAGGGAGTGCCTCTCCTCGGCCATCAGCTGATCCAGTGCCCAGAAGGTGTCTTCCTCTGGCAGATACAGGAGGAGGATGGCAGTTAGGCAGCTCATGTCCCTGTGGTAGCCCACTTCCTGCAA---GAGCCAGA s mm3.chr2 175027542 145 - 181423755 ----GCTTTCTTACCGTGCATTGCGTGCTTGGGGCCCGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCTTCCTCGTTCATGTACATGAGGAGCAAGGCCGTGATCTGACTCATCCCTTGGCAGTACCCGACTTCCTAAGA---AAGGGAGA s rn2.chr17 79355446 152 + 93540836 GCTTTCTTTCTTACCATGCATGGCGTGCTTGGGGCCTGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCCTCCTCATTCATGTACATCAGGAGCAGAGCTGTGATCTGACTCATCCCTTGACAGTACCCGACCTCCTAACACACAATGAGAA a score=18161.000000 s hg15.chr22 14466124 439 + 49476972 TGCACCTGATGTTCACCAGGGGCCTAGGAATCCACTTGCAGCCTGGGATC------CTACAGGGGCCTAATGTTACCCTGCAGATTGGGTAGCCACTTGGAGATCAGGTATCAACCTGGGGACTGTGGTTGACCTGCAGGCTAATGTCCACCTGGGGACTGGTTATTCACCTGAGGCCTGATGCGCACCTGGGGCCGAATGTCCCCCTCAGGGTGAAT-TCCACCTCAGGCCTGTATGTCCACCTGGGGCCTGATGTCTGCCT-TAGATCTGTGTCCCACTGGGGCCTTGTGTTCACCGGGGA-----------------CTGGTATCCAGCTGTGGCCTGATGATCTACCGCATCCTGTTGCT--CACCTATGGGCTGGTGTCTACCTGGGGCTTGGTGATCACCTGGGAGCCAG----ATATCAACTTGGGGCCTGGGTGTCCACTTAAGGCCTGATGTGGGCCTGGG s mm3.chr12 96148732 434 + 114462600 TGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTC-AGTGTGCACCTGATGGTCA-GTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGTG-GCTGGGTACCTGAGGGCTAGTGTTGCTAGAATCT--ATGTGGTCCAACACCTGGGTGTA-AGTGTGGCTGGCACCTATCGGTCAGTG--TAACAGGA----------CACCTAGGGGGCAG----------------ATCCTGGGCTGCCGCT--AGGATAAATGTGGACTGGAG s rn2.chr6 121204990 344 + 146362310 TTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATC-AGTGTTCACCTGGTGGTCA-GTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTGA------------------------------------GGGTTAGTGTT-GCTGGGAA---------------TGTGAGAATC----TGTGGTCCAACACCTGGGTGTA-AGCATGGCTAACACCTATTGGTCAGTG--TAACTGG------------ATCTGGGGAGCAGCTCACTCAAAGCTTTCATCCT-GGCTGGTGCT--AAGATAAAGGTGGACTGGGG a score=10778.000000 s hg15.chr22 14467625 123 + 49476972 TGTGTTAATGTG--GCCTAATGTACTCCTGGGTTCTAGGGTCCTCTTGGGACCTGATGTCTACCAGGATCCTGGTATCCACCTGGGGCCTGGTATCCACCTAGGGCTTGATATTCACCTGGG----GCC s mm3.chr9 120634760 127 + 124467299 TGTGTAACTAGA--TGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTGCTGTGCACCTGGATGCTACCATGCACCTGGATACTGCC s rn2.chr8 124186120 123 + 127756414 catgcacctggatttgctgccatgcacctgga---tgctatgcacctggatgctgccatgcacctgga---tgccatgcacctggatgctgccatgcacctggatgtggccatgtacctggatgctgcc a score=20161.000000 s hg15.chr22 14468254 362 + 49476972 CTGAGTTCTGAGTGTTCACATAGGGCCTGCTGTCAACTTGGAACCTAAGTATTTACCTAGGGCCTGGGTGTCCACCTGGGGCCTGACTTCCAACTGGATCTTGTGTCAACATGGGGCCTGATGTCCACTTTGGGCCTAGGTAACTTCCTGACGACTAATGCCCACATGGCTCCGAAGGACCATCTGAGGCCTGGTATTAATTTAGAGACTGGTATCCACCTGGGGTCCAGGTATCCACTTGGGACCTGATGTTCACCTGGAGTGTAGGAATTCACGTGGGGCCTGGTGTCCACCTTGAGTGTGTGTATCCAACTGAGTGCTGGTGTCCACCTGGAGTCCAGTGTATACCTGGGACCTGATGT s mm3.chr12 96148682 341 + 114462600 CTGCTTCCTCAACCTCCACCTGGGAGTCAGTATACACCTGGGA-GTCAGTGTGCACCTGGGA-GTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGG-----GAGTCAGTGT-GCACCTGATGGTCAGTGTGCACCTGGG------------AGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGG-GTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGT s rn2.chr6 121204940 255 + 146362310 CTGCTTCCCCAACCTCCACCTGGGAGTCAGTGTGCACCTGGAA-ATCAGTGTTCACCTGGTG-GTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGG-----AGGTCAGTGT-GCACCTGGGAGTCAGTGTGCACCTGGA------------AATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG------------------------------------------------GCACCTGA------------------------------------GGGTTAGTGT a score=149.000000 s hg15.chr22 14468616 97 + 49476972 ACATATGGGACCTGGGCATCCATCTAGGACCTGATGTTCACATAAGGGCTGGCATTCTCCT--GGCCTGGTTCCCATATGGAGCCTGGGCGTACACTTG s mm3.chr12 96148877 99 + 114462600 GTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTG s rn2.chr6 121205135 49 + 146362310 GCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTG a score=24255.000000 s hg15.chr22 14469377 244 + 49476972 TGCATCAAGACCCAGGTTGACACCCAGGCTTCAGGTGCACACTAGGCCCAAAGTGT--------------ACACCCA---------------TGCCCAGGTGGGCATCAGGCCC---------------------------------AAGGTGTACACCAGACCCCAAGTGGACATCAGGTTCCAGGTTGACACCAGTCTCT-----------------AGGTAGATCCTTAAGCCCCAATTGGTCATCAGGCCCAAGGTGGATACCTTGACCCCAGGGGGTCACTAGGTCCCAGG-------CAGGCCTCAGGTGGACACTAAGCCCTA s mm3.chr4 151352257 277 + 152921959 TGCCTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCAATATATGACAAACGGGCTCCAAGCCCAGGCCTCAATAGACAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCA-GTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAG-TCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACATTCAGGCTCA s rn2.chr5 188219789 321 + 191625135 TGCTTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCAATATCTGACAAGCAGGCTCCAAGCCCAGTCCTTGATAGACAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCA-GTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAG-TCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACATTCAGGCTTA a score=585.000000 s hg15.chr22 14469993 91 + 49476972 TCAGGCCTCAAATGGATGCCCAGGCCCCAGGTGGATATCAGGCCTCAGGCAAACACCAGGCCCCAGGTAGACATTAGACACGAGATGGACA s mm3.chr2 16604334 89 - 181423755 TCCAGCTTCCAGGGGTGTTCTAGCTTCCAGGGGTGCTCCAGCTTCCAGGGGTGCTCCAGCTTCCAGGGGTGCTCTAGCTTCCAG--GGGTG a score=23892.000000 s hg15.chr22 14470084 328 + 49476972 CTCAGGCCACAAGTGAACATCT-GTCCCCAGGTGGACATCCATCCCAAGGTGGACATCAGGCCAGAGATGTACACCCAGGCCCCAGGAGAACCCCAGGCCCCAGGAGGACACTCAAGGGTCAGAAGGACACCCAGTCCCTAGGTAACTACAAGGCCT---------------CAAATGGACATGATGTTCCAGATGGATATGAGGCCCCAAGTGGATACTAGGCCCAGGTGGAC-CCCAGGTCT----------------GAGGGGTACAC-CAGGTCCCAGAGGAACACCAGACCCTAGGTAAGCATGCAGTCCCAGGTGGACATCAGGTTCCAGGAGGACACCAGGACCCAGTTGGTCAT s mm3.chr4 151352260 265 + 152921959 CTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCA------ATATATGACAAA-----------CGGGCTCCAAG-----CCCAGGCCTCAATAGA------------------------CAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCAGTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAGTCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACAT s rn2.chr5 188219792 309 + 191625135 TTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCA------ATATCTGACAAG-----------CAGGCTCCAAG-----CCCAGTCCTTGATAGA------------------------CAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCAGTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAGTCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACAT a score=1905.000000 s hg15.chr22 14470412 318 + 49476972 CAATCCACAGTTGAACACCAGTTCCCCAAGA-ACACCAGTCCTCAGGTGGGCACCTAGTCCTCTCGTGTGCATCAGGTGCCAGGC-TGACATAGGCAGCAGCTGAACTCTGGGCCTCAGGTGAACATCAGATCCCAGGTTGTCACCCAGGCCCCAGGTGAACACCAGGTTTTAGGTGAACACGAGGTCCTAGGTGGGTGTCTATGCTTCTGGTGAACCTCAGGCCCTAGTGGACACTCAGGCCCTTTATAGACATCTGGCTCCATGTGCACTCCCAGGGCCCAGGTAGACATGAGGCCCCAGAGGAACACCAGTCCTTAG s mm3.chr2 16604462 315 - 181423755 CAGTTTCCAGGGGTGCTCCAGCTTCCAAGGATGCTCCAATTTCCAGCGGTGCTCCAGCTTCCAGCA-GTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAGGGATGCTCCAGTTTCCAGGGGTGCTCCAGTTTCCA-GTGGTGCTCCAGCTTCCAGG-GTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAG--GGGTGCTCCAGTTTCCAGGGGTGCTCCAGCTCCCAAGGATGCTCCAATTTCCAGCGGTGCTCCAGCTTCCAGCGGTGCTCCAGCTTCTAGGAGTGCTCCAGTTTCCAGGGGTGCTCCAGCTTCCAG a score=22049.000000 s hg15.chr22 14471556 303 + 49476972 CCATAGGTGGACATCTGGCTGCAACTGGATACT-ATTCCCCAGGTGGATACCTAGGCTCAAGGTTGACATTAGTCCCCAGGTAAACAACAAGCCCCAGGTGAATACCTATGCCCTAAGTAGACATCAGGCCTCAGGCTGACACTCAGTCTAACCTCAACATTAGGCTCCAGGTGGACACCCAGACT-CCAGGTGGATACTAGACCCCAGGGGTACACCAGACTCCTGGTGGGCATAAGGCCCCACGAGGACACTAGAATCCAGGTGTATGTAAAGCCACTGGTTGACACCAAGCCCTCAGATGAA s mm3.chr12 18313603 301 - 114462600 CCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACA-CTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACT--GACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGA-CTCCCAGGTGGA s rn2.chr6 25157125 231 - 146362310 --------------------TCAGGTGC------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACT--GATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGA-CTCCCAGGTGGA a score=175.000000 s hg15.chr22 14471930 29 + 49476972 AACATCAAACTTCAGGTG------GACATCATTCT s mm3.chr12 18313552 35 - 114462600 AACACTAGCCCTCAGGTACCCAGCCACACTGACCC s rn2.chr6 25157105 20 - 146362310 ---------------ATTCCCAGCAACACTAACCC a score=21447.000000 s hg15.chr22 14471959 390 + 49476972 CCATGTAAACTCTAGCCCCTGCTAAACATCAGGCTCTAGGTGGAAGCCCAGACCCCAGGTGCACTTCTGGCCACAGTTGAACATCTGTCCCCAGGTGAATATCAGACCATGGATGCATAGCAAGTCCCCAGGTGGACATCAGGTCAAAAGTGAATATAAGTCTCTAGGAAGACATCTGGCCCCAGGTGGATACTGAA-CTAGAGGTTTACATCGGGCCCCAGGTTGACAGCAAGGCCCAGGTAGACAGCAGGCCCCAAGTGAAGACC-ATGCCCAGGTGTATACTGAACTAGAGGTTTACATCAGACCCCAGATTGACATTCAGTCCCCAGGTGGTCATGACACCTCAATTGGACACCAAGTCCTCAGGTCGATACCCAAGTCCCAGGTGGA s mm3.chr12 18313536 368 - 114462600 CCACATAGATTCTAGC--------AACACTAGCCCTCAGGT-----------ACCCAGCCACACTGAC--CCCCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGA-CTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCC-CAGGTGTATA-CTGACTCCCAGGTGGA s rn2.chr6 25157091 265 - 146362310 CCACA--GATTCTCAC--------A---------------T-----------TCCCAGCAACACTAAC--CC------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGA-CCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTC-CAGGTGCACA-CTGACTCCCAGGTGGA a score=7504.000000 s hg15.chr22 14472595 285 + 49476972 CACATGGATACCTAG----------------TCCCCAGGTAGTAGACATCAGGTCCCAGTTTGACATCAGTTTCTGGATAGATCCCTAAGCCCCAGGTGGATATCCAGTCTCCAGCTGAACATCAGCCCTTCGTGGACACCCAGGCCCCAGGTGGATATCAGGTCTCAAGTGAACACAAGTCCCCAGGCAGACATCAGGCACCAGGTACACACTCAGACCCCAAGAGGACAACTGTCCCCAGGTTGACATCACTCTCAAGGTGTACATTAGGCAACAGATGTACACCCAGGTCCAAGGCAG s mm3.chr12 18313537 258 - 114462600 CACATAGATTCTAGCAACACTAGCCCTCAGGTACCCAG-----CCACACTGACCCCCAGGTTCACA-------------------CTGACCCCCAGGTGCACA------------CTGACCATCAG------GTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCC-AGGTGC s rn2.chr6 25157092 155 - 146362310 CACA--GATTCTCACA---------------TTCCCAG-----CAACACTAACCC-------------------------------------------------------------------TCAG------GTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCC-AGGTGC a score=26507.000000 s hg15.chr22 14472880 335 + 49476972 ACACGAGTCCCCAGTAAAACTCAAGGCCCCAGAAGGATACTCAAGCCCTAGGTGGATGCCCAGACCCCAGGTAATTACAAGGCCCCAGGTGGATATCAGATTCCAGATGAACATTAGGCCCCAAATGGATACCTAGGCACCAGGTAGACATCAGACCCCAGGTGCATCCCCCAGTCTCAGGTGCACACTAGGCCCCCAGTGAACACTGGCT-CCAGGTGAGCACCCAGTCCAAGGTAGACACCATGACCCAGGTGGTCATTAGGCCACAGCTGAACACCAATCTTGAGG-GAACACCAGATCCCAGGTGGGTACCTAGTCTCCAGGTGGATATTGGG s mm3.chr12 18313577 334 - 114462600 ACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACT-GACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCA-CACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTC-CCAGGTGGAGGTTGAG s rn2.chr6 25157115 248 - 146362310 ACACTAACCC-------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACA-CCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTC-CCAGGTGGAGGTTGGG a score=225.000000 s hg15.chr22 14473215 14 + 49476972 CCCCAAGTGGACAC s mm3.chrUn_random 115326927 13 + 117911829 CTCCAGGTGGG-AG a score=21363.000000 s hg15.chr22 14473229 374 + 49476972 CCAGCCCCCAGGTG------AACATCAAGCTTCAGGTGGACATCATGCCTCAGGTGAACTCCGGGTCCCAGCCCAGCTGAACATCAGGCTGCAGGTGGATGCCTAGGTTCCAGGTGCACAACAGGTCACAGTTGGACATTCAGCCCCAGGTGAACATCAGGCCATGGGTGGATAAACAGTCCACAGGTGGACATCAGGTCAAAGGTGAACATCAGTACTCAGGTGGACATCAGGCTCCAGGTTGACATCAAGCCCAAGGTGGACACTGAACTAGAGGTTTACACCAGGCCCCAGGTTGACACCCAGGCTCAGGTGGACATTGGGCCCCAGGTGGATACCTAGGCCCCTAGTAAACCTCAGATTCTAGGTTGACATTCAGG s mm3.chr12 18313556 356 - 114462600 CTAGCCCTCAGGTACCCAGCCACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCAC----------------ACTGACCATCAGG-TGCACACTGACCCC------CCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA-CTGACTCCCAGGTGTATACTGACTCCCAGGTGGAGGTTGAGG s rn2.chr6 25157106 258 - 146362310 ------------TTCCCAGCAACACTAACCC----------------------------------------------------TCAGG-TGC-----------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACA-CTGATTTCCAGGTGCACACTGACTCCCAGGTGGAGGTTGGGG a score=6400.000000 s hg15.chr22 14473603 68 + 49476972 CCCCCAGTAGTCATTTGGCCCCAAGTGGACACTCAGGCGCCAGGTTCACATGATGTCTTAACTGGACA s mm3.chrUn_random 115327332 59 + 117911829 TTCCCAACAGGCACAGGGTTTCAGGAGGTCA---------CAGGTAGACAGGGAATTCTGGCTGGGCA s rn2.chr10 101888123 59 + 106208427 TTCCAAATGGGCACAGGGTTTCAGGTGGTCA---------CAAGTAGACAAGGAGTTCTGGCTGGGTA a score=10203.000000 s hg15.chr22 14473671 107 + 49476972 CCAAGGGGCCAGTTTGATACCCAAGTCCTATGTGGATGCCAGGTCCAGGGTTACACTCAAGCCCCAAGTGGACACCAGGCCCTAGGTGAATAACACAACCCATGTGG s mm3.chr12 18313805 98 - 114462600 TCAGGTGCACA--CTGACTCCCAGGTGCACACTGACTCCCAGGTGC------ACACT-GACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTCCCAGGTGG s rn2.chr6 25157257 98 - 146362310 CCAGGTGCACA--CTGACCTCCAGGTGCACCCTGACCCCCAGGTGC------ACACT-GACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGG a score=550.000000 s hg15.chr22 14473778 110 + 49476972 TTATTAGGCCCCAGAATGACACCAGTCCCCAGGTTAACAGGAAGCCCCCAGTGGGCACCTATGCCCCAGCTGGACATCAGGCCT-------AAAGTGGACACCCAGGATCAAGATGG s mm3.chrUn_random 115327045 107 + 117911829 gagtgggtctccaggtgggattgggtctccaggtgggagtggacctccaggtgggag--tgggctccaggtggg-attgggtctccaggtgggagtgggcctccagg-------tgg a score=18684.000000 s hg15.chr22 14473888 347 + 49476972 ACATCAGTACTCAGGTG------GACATCAGGCTCCAGGTTGACATCAAGCCCAAGGTGGACACTGAACTAGAGGTTTACACCAGGCCCCAGG-------TTGACACCCAGGC------------TCAGGTGGACATTGGGCCCCAGGTGGATACCTAGGCCCCTAGTAAACCTCAGATTCTAGGTTGACATTCAGGCCCCCA-GTAGTCATTTGGCCCCAAGTGGACACTCAGGCACCAGGTTCACATGATGTCTTAACTGGACACCAAGGGGCCAGTTTGATACCCAAGTCCTATGTGGGTGCCAGGTCCAGGGTTACACTCAAGCCCCAAGTGGACACCAGGCCCTAGGTGAATAACACAACCCACGTGG s mm3.chr12 18313553 350 - 114462600 ACACTAGCCCTCAGGTACCCAGCCACACTGACCCCCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGT--GCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGACTC-CCAGGTGCAC-----------ACTGACCATCAGGTGCACA--CTGACTCCCAGGTGCACACTGACTCCCAGGTGC------ACACT-GACTCCCAGGTGCACACTGACTCCCAGGTGTATACTGACTCCCAGGTGG s rn2.chr6 25157106 249 - 146362310 ---------------TTCCCAGCAACACTAACCC------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGT--ACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGATTT-CCAGGTGCAC-----------ACTGACTCCCAGGTGCACA--CTGACCTCCAGGTGCACCCTGACCCCCAGGTGC------ACACT-GACCACCAGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGG a score=1872.000000 s hg15.chr22 14474235 76 + 49476972 TCATTAGGCCCCAGAATGACACCAGTCCCCAGGTTAACAGGAAGCCCCCAGTGGGAACCTATGCCCCAGCTGGACA s mm3.chr2 19573622 76 + 181423755 ACCATGAGCCCCAGCTAGACCATGTGCCCCAGCTAGACCATGAGCCCCCAGCTAGACCATGTGCCCTGGCTAGACC a score=20410.000000 s hg15.chr22 14474311 432 + 49476972 TCAGGCCTAAAGTGGACACCCAGGATCAAGATGGACATCAGGACTCAGGTGGACATCTGGTGACAGGTGGA-----CATCAAGCTTGGT------GTGTACCTTGTCCCCGGGTAGTCATCAGGCCCCAGTTCAACACCAGTCCCTGGGTG-GATTCCTCGGCTCCAGGTGGACATCCGGTCTTCAGCTGAACATTAGACCCCAGGTGAACACCAGGTCT---------------------------------TAGGTGGACATTAGGCCCCTGGTGGACATAAAGTACCAGTGGACATCCATGTTGC-----------------AGGTGGACACCCAGCGCCCAGATGGGCATCAGGCCACATTTGGACATTGAGGCCCCAGGTGGATATCAGGCCTCAGGTGAACCCTAGGTCCAACATAGACATCAGGCCTTAGGTCGACACTCAAGCACCAGATGGACTGCTGCACCTAAGTAGAAAACAGACCCCTATC s mm3.chr4 151352173 413 + 152921959 TCTGATCTGAAGTGGTCAGGCGGGCCCAGG------GTCAGAGGTT------ACATCTGGGGGAATCTGGAAGATCCATCAACCCCCATCAGACCATGCCTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCAATATATGACAAACGGGCTCCAAG------CCCAGGCCTCAATAGA----CAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCAGTGGACACTCGGGCC-C-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACC-AAGTCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACAT------TCAGGCTCACACCCAGGCCCCACTCTGGGAACATTCACTATGGAGAACAGAGGCTCTTATC s rn2.chr5 188219788 374 + 191625135 -----------------------------------------------------------------------------------------------ATGCTTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCAATATCTGACAAGCAGGCTCCAAG------CCCAGTCCTTGATAGA----CAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCAGTGAACACTCAGGCC-CGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATC-AAGTCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACAT------TCAGGCTTACACTCAAAGCCCACTCTGGGAATCTCCGTTGTAGAGAGCGGAGGTTCTTATC a score=21119.000000 s hg15.chr22 14474743 226 + 49476972 TGGATATCTAAGATACAGGTATACAACAAGCCCCAGGCTGACATCCAGACCCCAGGTGGACACCATAGCCCAGGTGAACAGCAGGCAACAGTTTGGCACCAAGTACCTAAGTGAA-ACAAAGCCTTAGGTGATTACCAGGCCATAGGTAGTCATTAGTCTCCAGCTGGACAATAGTCCCTAGGTGGATACCTAGGCCCCAGGTGGACACTAGACCCCAGATTAACAC s mm3.chr12 18313665 224 - 114462600 TATACA-CTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATC-AGGTGCACACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA-CTGACTCCCAGGTGCACACTGACTCCCAGGTGTATAC s rn2.chr6 25157133 208 - 146362310 --------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACC-AGGTGAACACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACA-CTGACCACCAGGTGAACACTGATTTCCAGGTGCACAC a score=17841.000000 s hg15.chr22 14475137 374 + 49476972 CCCCAGGGGGACACCAGGCATTCATGAACTTCAGGCACCAGCTGTACATCAGGTTCCAGACAAATGTCCAGGCCCCAGGTGGATATCAAACCTCAGATGAACACCAGGCCCCAGGTAGACATCACAAACCAGGTGGACACTCAGGCCCCTACTGAATATCTGTCCCCAGGTGGACATCCATCCCAAGGGGAACATCAGGCCACAGATGTACACTTAAGCCTAAGGCAGACCCCAGGCCCCAGGAAAACTCCAGGCTCCATGAGGGCACTCAGACCCCAGGTGGATGCATTGGTCCTAGGTAAACACATGGCCCCAGGTAAGACATCAGGCTGCAGTGAACACGGGAGCCCAGGTGGGTACCTAGTCCCCAGGTG s mm3.chr12 18313585 317 - 114462600 CCCCAGGTTCACAC----------TGACCCCCAGGTGCACACTGACCATCAGGTGC-------ACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACACTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCACACTGAC-------------------TCCCAGGTGCACACTGACCATCAGGTGCACACTGA-CTCCCAGGTGCACAC-TGACTCCCAGGTGCACACTGACTCCCAG------------------GTGCACACTGACTCCCAGGTGTATA-CTGACTCCCAGGTG s rn2.chr6 25157123 231 - 146362310 ----------------------------------------------CCTCAGGTGC------------------------------------------------------CCAGGCA--CACTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACACTGAT-------------------TTCCAGGTGCACACTGACTCCCAGGTGCACACTGA-CCTCCAGGTGCACCC-TGACCCCCAGGTGCACACTGACCACCAG------------------GTGAACACTGATTTCCAGGTGCACA-CTGACTCCCAGGTG a score=15659.000000 s hg15.chr22 14475511 304 + 49476972 TGCATCAGGCAGAAGGTTGACCCAGTCCCCAGCTGAACTCTGGGCCCCAGCTGAACGTCATAACCCAGATGGTCACCCAGGCTCCAGGTGAACACATAGTCTTAGGTGGACATCAGGCCCCACATGAACACCCAAGCCCCAGGTAGAGATCAGG-CCTTAGGTTTACACCAAACCTCAGGTGGGCATCTGGCTCCAGA-------TGGCCAT-AGGTGGATAACTAAGCCTCTCCTGGATATCAGGCCCCAGGTAGACACCAGGCTCCAGGCGAACATCTAGCCCCAGGGGGACATCCAGCCCCTGGTGGACA s mm3.chr12 18313570 300 - 114462600 CCCAGC------CACACTGACCC-----CCAGGTTCACACTGACCCCCAGGTGCACACTGACCATCAGGTGCACACTGACCCCCCAGGTGCACACTGACCCCCAGGTATACACTGACCCCCAGGTATACA-CTGACCCCCAGGTGCACACTGACACCCCAGGTACACACTGACCGCCAGGTGCACACTGACCCCCAGGTACACACTGACCATCAGGTGCAC-ACTGACTCCCAGGTGCACACTGACCATCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACACTGACTCCCAGGTGCACA s rn2.chr6 25157108 214 - 146362310 CCCAGC------AACACTAACCC-----------------------------------------TCAGGTGC-----------------------------------------------CCAGGCA--CA-CTGACCCCCAGGCGCACACTGAC-CACCAGGTGCACACTGACCTCCAGGTACACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAAC-ACTGATTTCCAGGTGCACACTGACTCCCAGGTGCACACTGACCTCCAGGTGCACCCTGACCCCCAGGTGCACACTGACCACCAGGTGAACA a score=249402.000000 s hg15.chr22 14478865 2782 + 49476972 GGA-AACATTAGGATGAATGATATAAAAGAACTAAAATCAAAATGAAAATAAGTATGCTGACTCCTCACACTCTCTTTTATCTCCATGATGAAATAAATACAATTTAAATACCAAGATATGATATACATATTAA-ATGAGTTTTGA--GGAAGGACAGTAAAAAGTAACCATGCATCTTGTATTAATGAACCAGATAACCTATGACATATGGTTTTAGCAGTAAGATTTGATAA--------------------------TATATGTATTTCA-----------------TATTATTTCATAAGA----------------------------------AAAATTATACAT----------------GGATTTTTCTAGTGGCTA--CTTCATCTCCCACTTCT-TTTCATAGTACTGACTAGATTTTAAATTACTGATCATAATGTGTCTTAGTTCACTGAGATGATAAATAGCAAAACATTTCGAATTTAAATAAAGG------AAAGAAATTTTAAGTTTGATTTT-----------------TCCACTAAGCTGAGCTACCTT--------CCAATTAGATTATTTGAGATCTCACAAACAAAATAGTATCACAGCAGGACATAACCTCAGGATTCCTTTTCACATCAAAGTTTTTTACTTTCAAAACTCCAACCTTTACACTATATTGATATAAACGGCGGCAAGACCCGTAGACGGG-AGGTAATGTTATAAATGTACAAATTCCTTATCTATATTTAGATTT--ATACTTTACATAAAGATGTTCCCAAAACAGAAATAATATTATTAGAAATACTAAAATTGAATTTCATCAATACCTAATTTAGATAATAATTATGAGAAAAAGCATGTATTACACTTCATTGTACCTTAAATTTTTCCCATACCTTCATTCACTAGATTCACCATCAATTCAAAATTAGATAACCCATGAAGGAGCT--CA-TGTATATGTATATATACTGATGAAGCACTACTATGTTACTTTTGGAATAAAAATTAATGCTTATCTATATAAC--TTGCCCATTAAAATCCCCAAGCATGGCAATGTGTATAGTCAAAATAGCTACTAGAGTTCATTTTTAAATTCTTGTATATATAATTCTAAGATATAACAGTAAATTAGAGTCTGGCACATAAGGTTTTTTT---AAATAAAAGAGAAGCTATAA-AAATGCACATGAAATTACACTCATTAGAAGAGACTTAATTTTTACATAAACTTGGATTTGCCACTAGTTAGATTTGAGTCCTCAAACATAAACTATATATAAATAAGGGTTGATGTCAATTAATATTATGCTAGACTTATGCCACGACAAAAGCATCATAAAATAATACCAGTCTTTATGATATAAATTATGTAATTGCTAATAAATATTATTCTTCTGAATAATTTTACCCTAGTAATTTTCTTCAACCTGACAGGGTTTCATGGACAATTCGAACCATGAGTATATGCAAATGATAAGGTCAGGATTCA----TATTTTACCTCAACATAGTATATTATAATCACTATGCTATCTTTGTTAAGGATTTTCTATTTATTGTCACAAAAGGCATTCCT--------------TTATAGTATAAC-----------------------------------------------------AACCTAAATGTCAGGGTTTTCTTTATTTAT-------TGTATAAATATCTATCTGCATTAGTTCTAAAAAA---TGTATTAGCACTTTAAGGGCAGAACCCAAATACTGTAATACATTTACACAGCACTGAGTACATCATGTATAGTCTAAGTGTGTATAAAATACCAGCAATTGTACATGTAAAGAAAACTTACCAGACAGTTGTTTCCACTTGACTGTCATTGAGCTGCCAATTATCCAACTGGGGAAACAGTGGAAAAAGCACTTGAATCTGTCCAATTGAATGAATTGCACTATGAATTGAATGTGTTACTATCCCTTTCACATCCTATGTCTAAAAACAAAAATGTTTATTAAACTTCTATAGAATGATTTTCATCACTATTTCCTTGGTCCAAATACGTTTATAAGG-GAATTAAATAACATAGTTGGAAATTTTTTAAGCCCTCAATTA-TAATTTTTATACACATGTAAGACAAAAAAGTGAGTACCTTTG-CTAATCACTTTTAAATTTCAAATCTTAGGTCAACCTAAGATTTTTTTTTACACTAAAAATATGAAGTTAAAATCAAATGTTATTTTAAAATCAGAAATACTATTGATGGATTTAAAGA----CAAGTAATTTTAATGTT-ACAGAATATTAGTAATACAATCTTAAAGCAAAGTATGTTTTTATGTCTAACAACTAACTTATTC----AGTTAATTGATTT-AATTTGAAAGGCTGTATAATATATAAGATAATAGGTATGACAGATTTCCTACTAAGGAGACAAGGCCAGGGTAGAGCATATTGCTACAGAAAAGATAGACATTCTTTAAAGTTTCACTTAAAAGATCTGCAAAAGCCAAAAAGAAACAAAA--AGTCACAG-ATTTATAGATGAGCAATGTTTGatatataaaataaaaatattgttaaattCTGACAAGAACATGAAAACAAAGCCATGATTCACCCACCGGAAGCATTAGAGCATGTTGGGAATGCACAAAAATTGATGCATCCTCTTTTGGTGATGATTCCAGGCAGAGTTGAGTATCAGTGGCCCTAGCAATTATATGTAAAGGCAATGCTACTTGCAAGTTTCCCATCATATAAAACCTGTTTATGATGTTCTGCCAAATGAATATCACTCTTAGATTTAAACTTGAAGGTACTCTGAAAAAATAAAACTAAGGTAAACCCTGTTTTTAA-----AAGCAACA---ATTAAAAAGCCAAA-----------------------------------------------------------------------------GTTTTAAAGCAGAGAAACATTTGCAATAAGAAAGTACTTGTGTACCTTTCATGTGTCAGGGACTATTCAGTGGTGTTACTTACTTCGTTATAGTCACTTCAATTCAATGAGAGTT s mm3.chr3 56229795 2733 + 160674399 GGA-AAAACTGAAGTGGATGATAAAAACAA---TGAATAAAATCTAAAAGCAGAATACTGACTTTTC-----CACTTTCATCTCCTTGATGaaataaataaaacttaaatattaaaata-aatataaGCACTAAAATGAGTTCTGA----------AGAAAAAAAATTCCATAG---TTGCTTAAAAGCCCCAACCAACC-ACTATATGTGGTATTAGCATTAAGATTTTATAAAAGCTATTCATAAAACaaaatattgttataataattttatttataaCACTCCAAACTATTATCTTTCCAAACCTTCACTGAAAAATACAATCTCTTCTAGGTAATAAAATTTAAAATGCCAAGTAATTCTTAAGGATTGTTTAAATAGCAAGACATTTTCTCTGTTTTTTTCTTCATAGTATTTAT-----TTTAAGA-ATAGGCCATAATGTATTACACTCCCCTTAGATGATAAACaa-aatattttttt-atttaaattCAGGATCATGAAGCACGGTTtttgtttgtttgtttgtttgtttctctgtttTCCCTAAACTGATCTATTTTTGATTTCCTGGATGAAAATAAGCAAGCATTCA-GTGCAAAGTAACTGCCCAA-AGGACACAACCTCAGT-TTTCATTTCACTTCAAAGCTCTTGACGTTCAAATCTCCAACCTTTATATTACATTGAAATAAAATAAAGGATAACCCATAGATGGGCAGTGAGTGCCATAAATA--------------TTAGATTTACATTTAAATATGTTTTAGAAAATTGGTCTCCATACAGAAACAATAACACTATCAATACTAATACAGAA-GACTTCAA-AGTCAACTCAGCTAAT-----TTGAGAAAATCATGCCTTACATTTTACTAGATCTTAAACTTTCCCCACAAC------------------------TTTAAAATGCAACAACCCATTAAAAAGCTAGCA-TGTATGTGTATATATATTCATGAAG----TCTTTATTA-TTTTGGACTGAAAAATAATGTTTGTATATATAAC--AAGC---TTAAAATC-----------CAAAGCAAAGTGGCTTTATAAT-------------CCTCAATACCTTA------------GAAAATACA----TGAAACAGAGCTTGATATATAAGACATTTTT-----TAATAAGGGACGTAATAAGAAGTAAACACAAATTGAACTTCA-TAAAAGACATTTAATTTTTACCTGAACATGAACAAACCACCATTT---TTGTGTCCCTCAAAAGTGAAGCATATTTAAAGAAAAGCTCATGTTACCTAATACTGTTCTAATCTTAATTAGTGGC-ACTGCATTATAAAATGA-GTAACT--TTAAGCTCTAAA-TATATAACT--TATTGAATATACCTCATCTTAGTTGTT---------TAATATAATCTTATCTTATAAG------------------ACCTTGAACATTTGCTATGGCTAAGTTTGAAGGTAAATAAGTCTTTTCCTTCGC--TGTATATCATACTCACTTTATTACAT---CTAGAATTATTTCTTTCACTTTACAGAAAAAGATTTTTTATGGTAACTGTTTTT-TATTATGCAGGTGCAatatatatatatatatatatatatatatatatatatatatatacacacacatatatgt-atgtatgtatatatgtatatatatatatatatatatatatatGCCTCAGTTCTAAAAACATTCTTATTAGCACTTCA---GAAAAGCCCAAAAGCTGTAATATA-TTACATGGTATGGAATACGCCATGAAGAACCTAGGAGTGCAAACAGTA--GGATATGGTACA-GCAAAGAAAACTTACCAGACAGTTGTTTCTACTTGACTGTCATTAAGCTGCCGATTGTCCAGCTGGGCAAAAAGTGGGAAAAGTACTTGAATCCCTCCAATTGAATGGATTGCACTATGAATTGAATGTGTTACTATAGCTTTCACATCCTACAAC-AAAGACAAAAATATTTGTCAAACTTCCATGACAAGATTTTTGTCACTATTT-CTTCCCATAGGTATCATTATATGGCTAGTGTCCCCTGATACTATAAGAATTCTCAATCATGTACTTATTGATAGGCACACATGTATACAGTAAAAATG-ATGTATCTTTGACTAGTCACTTTCAAAGCTTGAAT--------AAGCTAAGCCATTATCCTAATC------TATGAAGGC-ATTCTAA--GTTATTCTAGAA--GAAAGTATTATTATTGGATTTAAGGACATTCAAGTAATTTTCAAGTTGGCAGA-------TAAGACCTTCTCAAATCAGAATAT-TTTTTATACCTAGTAAC-ATCATGTTCAGGAAGTCAACAGACTTGTATTTCAAAGGACATGGAA-ACACATGATAACAGATGGGGTAAATTTCCAAGGCAGTCAAAAAG----------------TTG--------AAGACAGAAACTT-------------------GGTTTACAAAAGC-----AGAAGC------AGCAGTAGCATTTGCAGGTGAGCAGTGCTTGCTATGG-GAAGGAACACA-GGCTGGGTGCTGAC---AGCATGGGT--CGAGCCCCG-CCCACCCACCTGGAGCATCAGTGCATGTGGGGAGTGCACAAAGATGGATGCATTTTCTTTTGGTGAGGACTCCAGACAAAGCTGAGCATCGGTGGCCTTGGC-GTTGTAGGAAAAGGCAATACTACTGGCAAGCTTCCCATCATACAGAACCTGTTTGTGATGTTCTGCCAAATGAATATCACTCTCAGACTTAAACTTGAAGGTACTCTGTAAAAATAAAG-TTTCATTAATACTCTTTTTAAGGAATCTTTAAGG---ACTGTAAA-----------------------------------------------------------------------------------TCTTTAAAGCAGAGAAACAATGGCAG-AAATGATTTCTTGTATTCCCTCCA-GTATCTTACCCTGCATCCCAGTGTTGCATATCCTGCTACTCTCACTTCAGATA--CGAGAGTT s rn2.chr2 140590949 2705 + 246339213 GGAGAAAACTGA---GGATGATAAAAAAAA---AGTATAAAATCTAAAACCAGAATACTGAACTTTC-----TACTTTCATCTCCTTGATGAGATAAA----ACttaaatattaaaata-aatataCACA-----ATGAGTTCTGATCTCAAG---AAGAGAAAGATTCCATAAATATTGTTTAAAATGCCCAGCCA-----TTATATGTGGTATCAGCACTAAGATTTTATAAGAGCCATTCATAAAGCaatatattattgtaataattttatttataaCACTTCAAACTATCATCTTTTTAAACCTCCATTTAAAAATACAATCTCTTCTAGGTAATAAAATTATAAATTACAACTAATTCTTAAGGACTGTTTAAATAGCAAGGCATTTTCTCTGGTTTTT-CTTCAGAGCATTAAC-----CTTAAACTATAGGTCAAAATGTAGTACATCTCCCTTAGGTGATAAATAACAAAAAACTTCT-ATTTAAATTCAGGACCATAAAGCGTACTTCATTTTTGTTTGT------------CTGTCTTCGCTAAACTGAACTATTTT-GATTTACTGGATTAGAATCAGCA-GCTTTCA-GTGCAAAGTAACAGCCCAA-AGGACACAACCTCAGG-TGTCATTTCACC-CAAAGCTCTAGACTTCCAAATCTCCAACCTTTATATTAAATTGAAATAAAATGAAAGATAAACTATAGATGGGCACGAAATGTCATAAATAAGCA----------TTAGATTTATATTTATATATGTGTTATGAAATGAGTTCCAATATAGAAACAATAACACTACCAATACTAACACAGAA-GTCTTCAA-ATTCAACTCAACTAAT-----TTAAGAAAATCATGCCTTACATTTTATTAGGTCTTAAACTTTTCCCACGACCTCATTCACTAT-TTTTCCATTAATTTAAAATGCAACAACCCATTAAAAAGCTAATAACGTATATGTATATAT--TCATGAAACCTTTCTTTATCA-TTTTGGACTGAAAAATAATGTTTGTCTATCTAACTCAAGC---TTAAAATC-----------CAAAGCAAAGAGGCGATACAAT-GCTAAAATTTATACTCAATACCTTA------------GAAAGTAAA----TAAAACAGAGCTTGATATATAATGTATTTTTATCATTAAAAAGGGAAGTAATGAGAAGTAAATATGAATTCAACCTCA-TTGAAAACATTTCATTT------------------------------------------AAGAATGAAGTATATTTAAAGAAAAGCTTATGTTACTTAACACTGTTCTAATCTGAGATCATGGT-GTTGCATTATAAAATGA-GTAACTCTTTAAGCTACACGCTAGATAACT--TACCGAATATACCTCACCTTAGTTGTT---------CAATATAATCCGAT-----AAG------------------AGTATGAACATTTTCTATGGCTAAGTTTGAAGGTGA----GTCTTTTCCCTAGC--TGTATATCATACT----TCATTACATTAACTA----TATTCCTCTCACTTTATAGGAAAACATTTTT----ATACTTGTTTTTATATTACGCG------------------------------------------------------------------------------------------CATATATAGACATGTCTGTCTCAGTTCTAAAAACATTCTTTTTAGCACTTCA---GAAAAGACCAATAACTGTAATATC-TTACATGGCACGGAATATGCCACGAAGAACTGAAGAGTGCAAACAGTA--GACTATGGTATA-GCAAAGCAAACTTACCAGACAGTTGTTTCTACTTGACTGTCATTAAGCTGTCGATTGTCCAGCTGGGCAAAAAGTGGGAAAAGTACTTGAATCCCTCCGATTGAATGGATTGCACTATGAATTGAATGTGTTACTATAGCTTTCACATCCTACGAC-AAAAGCAAAACTATCTGTTAAACCTCTGTAACAAGATTTTCATCACTGTTT-CTTATTCTAGGTATCATTACATGG-TAGTGCATTCTGTTATTGTAAGAGTTCTCAAGCATGTAATTATTGATAGACATACATGTTTACGGTAAAAATG-AAGTATCTTTCACTGGTCACTTTTAAATCTCCAAT--------AAGCTTAGCCATTTTCCCAATC------TATGAAGCCAAAGTTAA--GTTATTCTAGAA--AAAAG---TATTATTGAGTTTAAGGACATTCAAGTAATTTTCAAGTTGGCAGA-------TAAGACCTTCTCAAATCAGAATAT-TTTTTATACCTAGCAAC-TTCATGTTCAGGAAGTCAACAGATTT-TATTTCAAAGGACAAAGAA-ACAAATGATAAGAGATGGGAAAGGTTTCCGAGTAGGTCTAAAAG----------------TTG--------AAGACGAAAACTT-------------------GGTTTGCAAACTC-----AGAAGCAAAATGAGTGGTATTATTTGCGGG-GAGCAGTGCTTGCTTTGGAAAAGGAGCACG-GTCTGGGTGCTGGC---AGCATGGGTACAGAGCCCCA-CCCACCCACCTGGAGCATCAATGCGTGAGGCGAATGCACAAATATGGATGCATTTTCCTTCGGTGAGGACTCCAGGCAAAGCTGAGCATCGGTGGCCTTGGC-ATTGTAGGAAAAGGCAATGCTACTCGCAAGCTTCCCGTCATACAGAACCTGCTTGTGATGCTCTGCCAAGTGAATGTCACTCTCAGACTTGAACTTGAAGGTACTCTGTGAAAACAAAG-TGCCATTAATACTCCGTTTAA-----CTTGAAGGTGCTCTGTGAAAACAAAGTGCCATTAATACTCCGTTTAACTTGAAGGTGCTCTGTGAAAACAAAGTGCCATTAATACTCCGTTTAACCTCCACCTCTTCAAAGCAGAGAAACAAGCACAG-GAATGATTTACTGTGTTCCTCCAA-GTACCTGGCCCTGTGT-ACACTGTTGCTTATCTTGCTACTCTCACTTCAGATC--TGAGAGCT a score=12104.000000 s hg15.chr22 14482685 116 + 49476972 AATACAAAACTGGATGCAAACTATTAATTATTAGGCATGTGCCAAGACAAGAGCAACATGAATAATTAAAAATTTGTGTATGCTGTAGTCTGAAGTATTTCATTGATAATACTTTT s mm3.chr3 56232918 102 + 160674399 AACTCCAATCTGGATGAAAACCTCTAATTACCAGACGTAAATCAAGACAAAGGCAAAATGAGCAATTAATCACATGCATATA--------------AACTTATAGATGGTACTTTT s rn2.chr2 140593800 102 + 246339213 AACTCCAATCTGGATTCAATCCTCTAATTGCCAGAAGTAAATCAAAACAAAAGTAAAATGAGTAATTAACCACATGAATCCA--------------AAGTTAGGGATGCTACTTTT a score=37174.000000 s hg15.chr22 14482851 284 + 49476972 ATATCTGCATTCAAAAAAACAATGACTGAATTAAAACACACAAGATATGTTGTT---AAACACTA-AATCAGCTTTCCGTGTC-TGCATTTTACAAATGCTGAAACATTTGTACATCCCATTGTCTAGAACAAAACTCCTGCTTTCATTTTGTTCATCTTGCTTACACTGGAATTAACAAGTTTTAGTA-TATTATCTTAAAAGATTTAAAATACTTTTGTGGA------AATGTAAGATGTTTAATAAAACCTATTCTTATTTGGAAATACATTGGTCTT----AGTTTTTCTGAGTCC s mm3.chr17 63184730 291 + 93529596 ATATCAGCATTCTAAAAAA-AAAAATTGATTTAAG-AAAATGCTGTATGATGTTAGAAGACATTGTAATTATCATCCCGTGTC-TTTGCTGTACTCGTGCTGAAGTGTTTTCACAGTCCTTTGTCTAGAAGAAAATGTTTACTTTCATTGTGATTATTTTGCT--CATTGAAATCAACAGGTTTTGATATTTTTCTCTTGGAAGATTTTTATAACTTTTTGGGAATATGTAATATAAGATCTCTAATAAAATATAATCTTATCCTG---TGCATT-GTCTTCTGGAGTAATTCTTAATCC s rn2.chr9 106136938 289 + 118059026 ATATCAGCATTCT----AA-AATCATCGATTTAAACAAAAGGCTGTATGGTGTTCTGAGACATTGTGATCACCTTCGTGTGTCTTTTGCTGTACTTGTGCTGAAATGTTTTCACAGTCCTTTGTCTAGAAGAAAATGTTTACTTTCATTCTGATTATTTTGCT--CATTGAAATCAACAGGTTTTGATATTTTTCTCTTGGAAGATTTTTATAACTTTTTGGGAATATGTAATATAAGATCTCTAATAAAATATAATCTTATCCTG---TGCGTT-ATCTTCTAGAGTAATTCTTAATCC a score=8211.000000 s hg15.chr22 14492027 632 + 49476972 CTGAATTTCTAAAAAGAAA------AAAAAAGCtttttaatataaaaaaaatttGCTGATGCCTGTCATGGTGCAATTGTACTTACAATATTTACAAATTGAGAAAATGCAT--GTACCTGTGGATTTATCATCCATCCCCACTTACAACAAGGGTGCAGTAAGCTGAGAACTTTCAAAACTTAATAAAATACTATCTGATGTAATGCCCAAATTTACAGGTATCTCTCTTAAAAGT-TCTGACTT-----TAGGTACTC--TACTGTGTGTTAGGATACTA-------AGGATACTATACTATGTCACATGAGCTGTGCACACATGATGACCG-GGTTAAAAAGAATGACAAGATGACTGTTGTTAAAAAGAACGACAAGAAAGACGTGTGAAAAGAATACTACCAACTACAGAGTTTGCAAAACTGTTCAGGACACAGTTTGCTTCTTTGTGA---ATAGAATTACAAAATTGCTTATATTCAGCCTTTTTTCTTG-ATGTTGCCAGGAAGCTCCCATCAATTCTGAAATTTCACATTAGCAATCATATTGGATTTGTATTTTCT---TGATAT--------TCTACCTTTTTATAT----TTCATTTGT-TTGCTTGTCACTG-TATTTAATATCATTCTACTAGAGCTTAAAAAGACACTACAAGTATTTTAT s mm3.chr3 56265595 605 + 160674399 ctaaatacctaataaaaaattaaaaaaaaagaGTTTTGAATATACAAA--------------CTGTTGAGTAATAGGTGTACTTTGTATTTT---GAATTAAGACAATTCATTTGTACTCATAAATTTATAATCT----CCATTTGAAA---AGGCTCAGATGTACACAGACTTTCATAACTCAGTATGATAGTTTCTCATTCCTTGCCCACAATTAGAGATATTTCTTGTATAAATGTCAGACTTTGGTGTAGGTACACCACACCCTATATTAGGAAACTAGTTGTAGAGGA------ATTCAGTGGCTTGGGATTTCTACTTATTTTTACCTCTGTTATA--------------------TATTTAAAAAAATGTCAAGAAA-------GAACAAAATGATA--AATTTC-TAATTTACAAAGCTGCTCAACACAATGCTGGCTCCTTTCTTAGAGGAAGAACTACTTAA-TATTTAGATCTTGCTCTTTCTCTCATGTGTTGTGAAGGTGTTCCTATTAATTCTGAAATT-----ATAATAGTGATACTAGGTTTATACTTAATATATGGTATAAAAATAATGTAATTTATCATCTCACCTTCATTTATATTTTTTGTTACTATTATTTAATATCATTTAACTAGTGCTAAAAAAAA------AGGTACTTCAC a score=880.000000 s hg15.chr22 14492659 36 + 49476972 GAAACAACTCAAAGAAGTAGGAAAGAAAAGCAGGCA s mm3.chr3 56266379 33 + 160674399 gagagaa---aaagagagaggagagacagagagaca a score=32536.000000 s hg15.chr22 14492784 450 + 49476972 ATGAAAGAAGAAGTAGCTGGACAGGCACAAATTCATTTCTAGAGCTAGTAAGACAAAAACAAAAATGATATGGAAAATATATGATAGCAA---GTATTGTTACCTTGACATAAAAATAATAGCATTATTATTCTTCAATATTATTATGGTTATTAAAGTCACTGAGAA-AAAAAGATCTTTTAATATAGGTAAATTCAAACTTTCCTCTCTCTCTCTCTCtatatatatatatatacatatgtgtgtgtgtgtgtgcgtatatatatatatatatGACATAAAAATA--AAAAGAGAAATACCAATGCAAAAATACAAAGGCCAAAGAGGGACTTTTTTAAAT---GTTTTTCCTTTCCATAACACAATCTTCACATTAATTATTTAAATTGAGTTC---AATAAA---TAAACCAAGCTTCCATACAAGACAAGTACTCCTTCAGAATTATAAACACTTTGAGT s mm3.chr3 56268136 370 + 160674399 ATAAGGGGTAAAATGACTATACTAAAACCAGTTGTTACCTAGGCCTAGTGAAACAAA---TAAAACTAAATGG---ATACAAGATAGCAACATGTAATGTCACTGTGACACAAAACAGAAAG-ACTGCTGT-------AAGTATTTTGGTTATTAAAATCACTGGGAACACTAAGATCTTTTAAA------GAAT---AATTTTGTTATTTCTATGTCTAAAC--------------------------------------------------------TAAAA-TAATAAAACAGAAATATGAATATAA------AAAGGTTTTAAAAGTATATTTTAATATTTATTGTTACTCTTCCATAACAAA--CTTCCCATTAATT-TAAACATTAAACTTTTTAAAAAG----CAGCAACACTTTAAATTATGGCATGTGCTCCTCAAACATTGTCA--ACTTTGATT s rn2.chr2 140617895 369 + 246339213 GTAAGAGGGAAAGTGGTTATACTAAAACCAGTTCATATCTAGACCTAGTGAAACAAA---TAAAACTAAATGG---ATATAAGACAGCAACATGTAATGTCACTATGACACAAAACAGAAAG-AGTGCTGT-------AAATATTTTGGTTATTAAAATCACTGGGAACACAAAGATCTTTTAAAA-----GAGC---AATTTTGTTATTTCCATTTCTAAAT--------------------------------------------------------TAAAAATAATAAAACAGAAATATGAATACCA------AAAGGTTTTTAAAG---ATTTTAATATTTGGTGTTATTATTCCATAACAAA--CTTCT-ATTAATT-TAAATATTAAACTT---AAAAAGAGGGCAGCAATACTTTAAATTGCAGCATGTGCTTCTCAAGCATTATTA--ACTTTGATT a score=19215.000000 s hg15.chr22 14493234 150 + 49476972 ATAATGTGTAATTCTCTTTCGGCTCCAAGTAGTTTGAGACTTCACAATTCCCAATGTGATTT-AAACAGAACCTTTATATATTTCCCTAGCCAGGTGTACTGCACATTTAAAACTAACTCATATATGTGCATGCTATATCTTACCTAGAGT s mm3.chr3 56268681 141 + 160674399 ATACTGTATAATATTGTCTCGCCTCCAAATAGTCTGAAACTGTACAACTCCAAATGTGATTTTAAAAAG--TCTACCCGTACTT-----ACCAAGTGT---GTTCATTAAAAACTAATTCATAGGAGTGAATGCTGTATCTTGCCTAAAAT s rn2.chr2 140618436 138 + 246339213 ATACTATACAATATTGTCTCACCTCCAAATACTCTGGAATTGTACAACTCCAAAAGTGATTT-AAATAA--TCTACTCATAATT-----ACCAAGTGC-----TCATTAAAAACTAATTCATAGGAGGCAATGCTGTATCTTGCCTAAAAT a score=70849.000000 s hg15.chr22 14496436 768 + 49476972 AAAGTAACTTTTCTCTTTCCTTGGTACATCAAACTGTACTCTACAGATAACAGACACAAGTGAGTTTTTCAATGGTTAAAAAAAGCCTAACTTTTGACCTTATATATGTGGACTAAAGAAAATAAAAATAAACTTGGAAACTAGCTGTGCATACTGATATTATGTATATATAGTGAAGTCTGCATTTAGTTTGAGACT-CAAAAAGAAATTTATAGAAGAAGGACACAAC-CAGGAATAAGGGAAA-AAAAAGATCCATATTAAGAATCCACAAGATATATATTACAAGTTGAAGATATGGAAATAAATTGAAGACAAA---AAAGTAC-AGATGATATCAATAA---------TAGCTAATATGTCTAGAGCACATATTACCA-TTAGGTAACATGCTAATGGTTTATACCCATTTTCACAAGTTCTA----ACAGCTGGTA----AGCGGTGCAGCTGGGAAAGCAAAAGTTTTAATG-TAAAGATTTCTTTTTGAAAGGCCAGTAAATCTCTTATTAG-------------------GAAGGATAACAACAACTTAGCTAGGGCATCT-GTGGGAAATTAAAGAAAGGAAGAAATAAGAGAATAAATT--TATTTTG----------------AATAATGAAACACAATAAAAGCAAATACTTATGAC-----TTTTCAAGGTTTTTGAGAATCTTCACAGAAGAC-TTTTTAAAATCCACATCATTCTCTGGCCCTGCTCCTAACTAGACCCTTAGTATCATTGC-ATATTGAGAGCTTTACAA--AGGAGAATGTGTTTTCCACAAGTAAACAGTGAAGAAAACACAAAATAG--------AAA s mm3.chr3 56272590 797 + 160674399 AAATTTAGTTTTCTGTCTCTTGGAACCATCAAAATG-----------TAATAGATGTACAAGAG-CTTTCACCATTTCAGAGGATCCCAATGTCTGACTTGATATTTTTAAGTTACAGACAGT---AACTGATCTGGAGAGTGCATATGCATACTGACACTAATCATATATACTGTGCCCTGCACTCAGTTTGAGATC-CAAATATTGATGTATAATAAATCTGGAGAAC-AAGAAATAAGAACAATACATATACTGATACTAAAAATTCCTGAGAAATGTATTACAAGTTAAACA-----AAATAAATGAGAAATAAGAAAAAAACACGAAATAATGTTTATAGAAATATCACTAGGTGCTATGCACTAAACATTTTCTATAAATGAGGTAAAATATTAATGG-TTACATTCATTTTTACAAGGTCAG----ACACCCCTTAGT--AGCAGTTCAGCCGAGCAAACAAAAGTTTTAGTGTTGCATATCTTTTTAGGAAAGGCCAGTAACCTATTTACTAAGGTGAAGTTTCCCCTAATTGAAGCACAATAGCAAGTCAACTACCACATGTCCTGGAAAATTAAAGAAAGaaaaaaat-------tttaatgatattttaaatgatatttttgtataataataGAGAGGAGTAAGGCAAAA-----ATTACTATAATTTTCAAAGTTTATTAAAATCTTTTCAGAAAAACTGTTTTGTATCTGTTTCATTCCCTGAGCCTCACTCTTACAAGACTCTCTGCA--ATTACTATATTTAAAATGCAAAAAACACAGGAATGCA-TTTTCATAAGCAAATAGGAAAGAATAAATAAAATGA--------AGA s rn2.chr2 140621976 772 + 246339213 AAATTTATTTTTCTGTCTCATGGAACCATCAAAATG-----------TAATAGATGTAAGTGAG-CTTCCACCATTTCACAGGATTCCAATGG-TGACCTGATATTTTC-AGTTAAAGGCAGT---AACGGATCTGGAGGGTGCATATGCATAAAGACACTGAT-ATATATACTGTGCCCTACATTCAGTTTGAGATCGAAAAAATTTATGTATAATAAAACTGTACAACAAAAAAATAAGAAAAATACATATACTGATACTAAATATTCCTGAGGTA-----------TTAAAGA-----GAATCAATGAGAAATAAG---AAAACACAAGGTAATATTTACACAAATGTCACCAGGTG------------------CTATAAGAGAGGTAAAATGCGAATGG-TTACACTCACTCTGACGAGGTCAGTAGTGCACCTCTTAAGTAAGCAGTTCAGCTAGACAAACAAAGGCTTTAGTGCTGCATATCTTTTTAGGAAAGACCAGTAACCTATTTACCGAAGTAAACTTTCCCCTAATTGAAGCATAATAGCAAGTTAACTACCACATGTCCTGGAAAATTAAAGAAAGAAAGGATT-------TTAAAT--TATTTTA---------TTTCTATAACAATAAAGAACAGTAAGGACAAATAATCATAATTTTCATTTTCAAGGTTTATTAAAATCTTTTCAGAAAAA-TGTTTTTAACCTGTTTCATTCCCTGGGCCCTACTCTTACAAGACTCTCTGTA--ATTACCATATTTAAAGTGTTAAAAACACAGGAATGCATTTTTTGTAAGCAAATAGGAAAAAATAAATAAAATGAGAACAAACACA a score=87282.000000 s hg15.chr22 14498480 977 + 49476972 tccctagtgcctacaatggtgtccaatactcagtaaataataagtatctattgaaagaatgCCATAGAACAGATGAGACTGAGATAATGAGAGAATGTAAGAGAAATACACGCAAGAGATCAAAGCACTGACCTTACAGAAGACAAAAATTAGACATAAAAGTAAAAAGAAAATGCAAACAAGGATAAGAGAAAACCATTAAAAGCATAGGAAATCCAGTGAAAGAGAATGCTACAGAGGTCATA-------------------AAAGGATAGTTAAGAATTCTGTCATAA----CAAGTGAGTTATAAAAATATTTACTTTTACCTACCTTACGTGGTTGAAAATCATATTTCACACAATGCTGAAAACATTTTCCTTTGGACTTCGATGATGTGACTATAAAACAGTTGCCAACAAAATGAGCAGAGTAACCAACTCCTTTGCTAGCATGAAAACTGTAAAGACAACTGAGAATAGTATAATATCCTCTGATAAAAAGAACTAAACACCTAATGGCTATTAAACATTCCTATAAAAATAAAACTTATTTCCCTGTATGGTAGAAGGAGTTTAATATGT--GTCAAATAAAAACTAAACAAAAATATAAAAGGTTGAGTTAT---AAGTAAATATAAGAAATTTAAAC----TAGGAAATAAAAGACTATGGAAGCTTTTAGTATTTCCATCTAAAATCTCAGAAATACATAAAAACAAATTAACTGCCAACAAAACCCTACCACCAAGTAGACTTTATCTACCTTTAAGGACCATTTGCAATCAGCAAATACAGAACACATTTATACAAAGTTCACATTTTAAATAACAACCTGCTCTC-TAATTCTGGTATACCTTTGAAAATAGCATACAAATTAAAAAGAAAAAggaaaaaaaaaacttggtc----atagtcaagtttgataaatactgcagttgattg-----------------agcaaagcagtacatttttagtttaaaaaattaaaaagatgtaactatgaa--------atatggttgttttcttct s mm3.chr3 56274670 888 + 160674399 TTCCTAGTTCCTACA--GGTCTCCTGCAT--------------GTATTTCTAGGAACAC---CACAAATTAGTTCAGACTGAGAGAATGAAC--GTGTGACAAAAACAC-CACAAGGTGTTAAAA----GACATCAC-----ACAGAAGTCAGACATGAAGAT---AAGAAATTACA------GGAAAGAAAAAGGCACAGAAAGTCAGGAGAA---GGTGAA--AGAACATTACAGAAGTCACACTGCACAGC-CCGGGAAA-GGAGAACAGCTA------CTGACATGGTTTCCAGGGG--------AAGCATCTACTCTGCCCTACCTTGCGAGGCTGGAAATCATACTTCACACAGTGCTGGAAACCTTTTCCTTTGGACTTCAGAGATGTGACTATCAAACAGTTGCCAACAAAATGAGCAGAGTAGCCCACTCCTTTGCTAGTACGAAAACTGTATTAATAA-----AATAATACAG-AAACTCTGGTTAAATGAAATATA---CCAACACGTACTAAAACCTTATACAA----TAAACTGAATTTTCAGTATAGTCATAGT----TAACACATTGGCCAAATAGAAACAAAA-------ACATAAGTTTTA-TAATAACAAAAAAAAGTAAGGGATTTAACC----CAAGAAATAGTAGGCTTTGGAAACTCtttatatttaaatttaaaatataataGACAT---TAAACAAATTAATGATCAAAA-----TGTCTACTGGGCAGACTGTATATG-----AAGGACCATCGCCACTTCACCCGCTCAAAACTCATTTCAACAAAGTTCATGGTGTCAGT-ACAACTTGGTCTCTTAAATTT------------ACAATA------AACTTAA----AAACTATAAAAAGAAAACCTTACCAAGAAGAGCTAATTTTTAT-AATAATGTGATTG---------------------ATCAAATAAGTACATAT---ATTTTAATCTAAATAAGAACATGCTTACTAAACAATCTCATATAATTATAATGTTCT s rn2.chr2 140623942 896 + 246339213 TTCCTAGTTCCTACA--GGCCTGCTCCAT--------------GTACTTCCAGGAAGAATGGCACAAATTATGTCAGACTGAGAGAATGAACAAGTGTGACAAAA-CAA-CACAAGAGGTCAAAA----GTCATGGC-----ACAGAAGTCAGACGTGAAGAT---AAGAATTTA-------------GAGAAAGGCACTGAAAGTCAGGAGAA---GGTGAA--AGAATATTGCAGAAGTCATGCTGCACAGTGCTGGGAAATGGTGAATGGTGA------CTAACATGATTTCCAAGGG--------AAGCAGCTACTCTGCCCTACCTTGCGAGGCTGGAAATCATACTTTACACAGTGCTGGAAACCTTTTCCTTTGGACTTCAGAGATGTGACTATCAAACAGTTGCCAACAAAATGAGCAGAGTAGCCAACTCCTTTGCTAGTACGAAAACTGTATTAACAA-----AAGAATATAA-AAACTCTGGTTAAAAGAAATATA---TTAACACCTACTAAAACCTTATATAA----TAAGCTTAATTCTCTGTATAGTCAGAGG----TAACACATTGGCCAAATACAAGCTAAA-------ACATAAGGTTTA-CAAT---AAAAAAAAGTAAGGAATTTAACTTAAGTAAGACATAGTAGGCTATGAAAA--CTTTATATTTAAATGTAAAATACAACAGATAT---TAAACAAATTAATGATCAAAA-----TGTCTCCTGGTCAGACTGCATATG-----AAGGACTATCTCCACTTTGCCCATTCAAAATTCATTTCAACATAGTTCATGTTATCAATAACAACTTGGTTTC-CAAGTTT------------ACAATA---------------------CTTATCAAAAAGATCTTACCAAAAAGAGCTGATTTTTAT-AATAATGCGATTGATCATATCCATCTATTTATCTATCatatatatacatgt---atatatacacatatatGCACATGACTATTAAACAGCCTTATATGGTTACAATTTCTT a score=92126.000000 s hg15.chr22 14501225 1334 + 49476972 TTCTTATCAATTTGCTATAAATGTTTAATTTAGCCACCTTCTAGTGACACTTTTACTACATTATTAAACAAAAAGTACCCCATTGAACTTAACATACTACAATACATTCAGATGTGAACAGTTAGAAGTGTTTTGGTGGCTACTGGTTCTTCCTTAGTATAATATTTAAAGTTTAATTTCTCTGTTAAAA--AGCAAGACAGAGGTATTTTT-CTGACATTTATTCTCTTTTCTCATATCCTTCCATCATCAAGCTCTTTTGAAAGGAAATACTAGAAATTACAAAAAGTGAAAAATTTTGTGTTATTAATATTATTACTGAGA--AAAAGATAGGAGAATGAAGAAGCTTTATATAATGGCAATGTCAAAATATGAACTTCTATGGTACGATCACCCTCACTGTCACTTTTACATTTCAGTGTTGATGAATTATGTACTAGTAAACTACTATGCATGTAATTTTGGCTCATTCTCTAAACTGCACTCCATAGAGTAGCAGGCAATTTCC------AAAAAAAAAAAAAAATTAAGAGCTTAA---ACTCAGATATAAGAATTGAAGGATCATATGATGTTCTATAAAACATG--------------T-----GTACACATAAGTCTATATTAATAAATTCCTAT----------TAAGTAACTCTAGA-ATTTATAGAAATGCTACTATTAATATATCTGTATTAAAAAGGTATTTTAAGAAACAGATGTGTGAATCTCATTTTTCACCAAGTTAGCCATCGGTCCCCAATACAGGGGTGCTAAGTCATTATAAAAAAAGATACTTGCCACCCTGAAGGTAATTACGTATGATTTTTAATATATTTTCTCAGAAAATCAAATTTTGGGAAATATTTAAATTCAAAGCATTCTTTTTGCGATTTTGCATTCTT-TTAA-CCCATTTTTCATTCCATTCTTTCTCATTTAATGTCTTGTTACATAAATTTTAAACATAATTAAATGCGTGAGTCAAAATGTTTAAGAGTATTCTCTGGTATCTGAACTACTTTGCAGGATCAGATATAATACTGTGGAGAGTAATATCAGCACTTTTATAATTATGAAAATGCTTTTATGTCAGAAGATACTTAAGCTGAAGATTCATGGGTTACAAAAAATAAACA--TTTCAAACTTTAAACTTATTTTCT-GGAATGATACTTGCTCTGAAATAAT-ATTCAAAACACTTTTCC-GAAATGCATCTAGCCACACAGGAGAATGAG---CATGCAAGGAGGTAGAGGGTCGGTGGTGAA-AAAAT-TATAGATTTCAAAGTTATTGTTTGAAATAACCCA-AACAAGCAAAACATTAGTATTTTTATCTTGAAATTCTTGGTGAATTTTATGTTCTAGCCCATAATATAT s mm3.chr3 56278699 1160 + 160674399 TTTTTGTCAATTCATCACAAAT-----ATCCAACCATATTTTAGTGATA--------AAATTATTAACTTTAGAGTACATCTATATTTTTAACACATTATA--ACACTCAAAGATGGGAATTAAGTAGTTTGCTGGTACTCATTCAAACTTTC--AGTGAAGTATTTAGATTTTAATTTCTCTATTGTAAGTAGTTAAGCAGCATTTTCTTT-AGGACACGCATTCCCTTCTCTCATATCC-TCAGCTATAAGGTCCTCTGGAAAATAAGTGC-------------------------------------------TACTGAGAAGAAAAGA-----GAACTAAAAAACTTCACA-------TTTGACAGAAAAT--GCTT--------AACATGCCCTCACTGCTGCCGTC---TCTCAG-------GAACTACT-----ATAAACCACTGTGCAT---ATGCTGGGCACTCCTCGAAAAC-TATTCTGTAAAGTAGTAAGTACATTATATTAGAAAAACAAACAACAAACAAAAAACAAGACTTACTCAGCTAATAGGATTCAAAGATCATATGAGAGCCTACACAATATA--CTACCATATTGAT-----ACACACATAA----ATACTCACACACTTATAC--------------TAACCCCCAACATTGACAGTCGTGCAAGT--------------------------------------------TTAATCTCATTTTTAATCATGTTAGTTATTATTCATC------------CATAAACATGCTCAACACAAATACAAGCTACTTCGGAAGCAACCAGACATGATCTCAAA-----GTAGTAA-GAAACataatttt---aaatttttaatttaaa---------tttaaaatCT---ATTCTTGTTAACCCCGCTGTTTATTTCCTTCTTTC----TTGATATTATACTCTGAAAATTTAAA----AATTAAAGTCTTTATGTGGAATTATTAT-AAAATTCTATAGGTTCTG-ACTCTTTGTAAAAAGTACATACAATATTGT--ACAGTCAAATTAGCACTTTGATAATTGTAGAAATATTTTTATGTCAGAATAAATTTAGACTATACATGTATTTGTGAAAAAGAAAAAACAAATTTTAAAC--TGCACTTATTTTCTAGAAATAACTGCTGTTCTGGGGTCATGAGCCAAAACATTTTTCCTGAAGCATCTCTAACCACAGAGAATAGTTAATTACTTGCCAAGAAGTC-AGATTTGGTAATACTTGAAATACCAAGATTTCAATACTACTATTTCAAATAATACATAATGAGCAAAAAAAAAAAAT-----------CACTTTATATACATTTTACGTACTATTCCACAACGTGT s rn2.chr2 140627903 1140 + 246339213 ATGTTAGCAATTTATTATAAAT-----ATTTAACCACATC-------------------------ACCTTTAGAATACCTCTATGTATTTAACATATTAGA--GCACTCAGAGATGGAATTTCA-CAGTATGCTGGTACTCATTCACACTTTC--AGTTAAGTACACA-------ACCTCTCTATTAAAAGTAGTTAAGCAGCCTTTCTTTTCAGGACAC-------------TCATACCC-TCAGCTACAAAGTCCTTTGGGAAAGAAGTGC-------------------------------------------TACTGAGAAGAAAAGATGAGAAAATTAAAGAACTTCACA-------AATGACAGAAAA---ACTT--------AGCCCGCCATCACTGCTGCCTTC---TCTCAG-------GAACTACTTACT-ATAAACCACTATGCAT---ATTCTGGGCACTCCTCTAAAAC-TATTCTGTAAAGCAGTAGGTAGTTTATTTAAGAAAAACAAGCAACAAACAAAAAGCATGTCTTTTCCAACAAAAAGGATTCAAAGATCATATGATATCCTATACAATATATACTCTCATACTAATGGTACACACATACAA----ATATTCATACACTTATATAAGCTCCTATAAAATAACTCTAAACATTGAAAGTAATGCAAGT--------------------------------------------TTAATCTCATTTGTAATCATGTTAATTATCATTCATC------------CAAAACCATGCTCACCACAAAGACAAGCCACTTTGGAAGCAACCAGACATGATCCCAAA-----GTAGTAAAGaaatataatttt---aaaaatttaatgtaaa---------tttaaaatCT---ATTCTTGTTAACCCCACTGTTCATTTCCTTCTTTG----TTGATATTTTACTCTGAAAATTTTAA----AATTAAAGTCTTTGCATAAAATCATTAA-AGAATTCTCTAAGTTCTG-ACTATTTATAAACAGTAGATATAATATTGT--ACAGTCAAATTAGCACTTCGATAATTATGGAAATATTTTTATGACAGAATAAATTTAGACTACACATCTATTTGTCAAGAAGAAAAGACAATTTTTAAAC--TGCACTTATTTTCTAGGAATAACTGCTATTCTGGGAGCATTAGCCAAAACACTTCTACTGAAACATCTCTAACCACC-----TCTCTAAC--CCTGCCAGTAGATA-AAAGTTGGTACTAAC--AAAT-CCAAGATTTCAAGATTATTATTTCAAAAAATTCTCAATGAGCCAAAAACTAA--------------CACTTTATATACATTTTACATTCTATTCCACAATGTAT a score=69994.000000 s hg15.chr22 14502624 329 + 49476972 ACGGGGGTGGCGGCGGCGGCAGCGAGTTCGGTTGCGCGTGACGCACCGGGTGGGAGCGGAGACCAGGCCGGGAGCAGGCGCC------ACCGCCAGCG---------------------------------------------------------------------------------------------------ACCATGGGGAACATGTTGGCCGCCAGCTCGCCGCCCGCAGGG------------------------------------CCGCCACCTCCGCCCTCGCCGCCGGGCTTCACGCTGCCGCCGCTGAGAGGCGGCCTGGGCGCCGGCACCCCTAGGAGTCGAGGTTCGGAACGGACCCCCGGGGCTGCAACCGCCAGCGCCTCAGGGGCCGCCGAGGATGGGGCCTGCGGCTGCCTGCCCAACCCGGGCACATTCCAGGAGTGCCACCGGAGGTGT s mm3.chr7 120242368 468 - 134401573 ACAGCGGTGGCGGCGGCGGCAGCGGGTTCGGTTGCGCTTAGCGCACGGGGTAGGAGCGGAGCCCAGGCCGGGAAGAGGAGCCGCCGCGGCCGCCAGTGAGAGCCGAGTCCGCTTTGGGTGGGAAGGGCCTGGGGTTGCATCCGGGGG-TGTGCGTGTCGCCCC-GATCCCTGCCCTCTGACCTTTCCCCTCGCAGATACCATGGGGAACGTGTTGGCTGCCAGCTCTCCGCCCGCAGGGCCACCGCCGCCTCCTACGCCGTCCCTCGTGGGGCTCCCGCCGCCGCCTCCTTCGCCGCCAGGCTTCACTCTGCCGCCGCTCGGCGGCGGCCTGGGCACTGGGTCAAGCACTGGCCGTGGTTCGGAACGGACTCCCGGGGCTGCGGCCAGCGGCGCTGCGGCGGCCTCGGAAGATGGGAGCTGCGGATGCCTGCCCAACCCGGGGACGTTCGAGGAGTGCCACCGGAAGTGC s rn2.chr1 206201447 467 - 276301343 ACAGCGG---CGGCGGCGGCAGCGGGTTCGGTTGCGCATAGCGCACGGGGTAGGAGCGGAGCCCAGGCCGGGAACAGGCGCCGCAGCTGCCGCCAGTGAGAGCCCAGTCTGCGTTGGGTGGGAAGTGCCTGAGGTCGCATCCGGGGGGTGTGCGTGTGTCCCCTGACCCCTGGCCTCTGACCTTTCCCCTCGCAGATACCATGGGGAACGTGTTGGCTGCTAGCTCTCCGCCCGCAGGGCCACCGCCGCCTCCTACGCCGTCCCTCGTGGGGCTCCCGCCGCCGCCTCCTTCGCCGCCAGGCTTCACGCTGCCGCCACTTGGAGGTGGCCTGGGCACTGGGTCAAACGCTGGTCGCGGTTCGGAACGGACTCCCGGGGCCGCGGCGAGCGGCGCTGCGGCGTCCTCGAACGATGGGAACTGCGGCTGCCTGCCCAACCCGGGGACGTTCGAGGAGTGCCACCGGAAGTGC a score=64250.000000 s hg15.chr22 14502953 1333 + 49476972 AAGGAGCTGTTTCCCATTCAGATGGAGGGTGTCAAGCTCACAGTCAACAAAGGGTTGAGTAACCGTTTCCAGGTGAACCACACAGTAGCCCTCAGCGCAATCGGGGAGTCCAACTACCACTTCGGGGTCACGTATGTGGGGACAAAGCAGCTGAGTCCCACAGAGGCGTTCCCTGTACTGGTAGGTGACATGGACAACAGCGGCAGTCTCCACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAAGAATTCTCGAAGCCCACTACCTCCAGAGCATCAGGCCTTGCCTGGCCCTGGGCAGAGAGCTGGTCTACAACCGGCGGCCTGGGGACGAGGG----CACTGTCATGTCTCTAGCTGGGAAATACACATTGAACAACTGGTTGGCAACGTTAACGTTGAGCCAGGCGGGCATGCACGCAACATACTACCACAAAGCCAGTGACCAGTTGCAGGTGGGTGTGGATTTTCAGGCCAGCACAAGGATGCAGGATACCAGCGTCTCCTTCGGGTACCAGCTGGACCTGCCCAAGGCCAACCTCCTCTTCAAAGGCTCTGTGGATAGCAACTGGATCGTGGGTGCCACGCTGGAGAAGAAGCTCCAGCTCCTGCCCCTGACGCTGGCCCTTGGGGCCTTCCTGAATCACCGCAAGAACAAGTTCCAGTGTGGCTTTGGACTCACCATCGGCTGAGCCCTCCTGGCCCCCGCCTTCCACGCCCTTCCGATTCCACCTCCGCCTCCACCTCCCCCTGCCACAGAGGGGAGACCTGACCCCCCTCCCTTCCCTCCCCCCTCAGGGGTTGGGGGGGACATCGGAAAGGAGGGACCCCGCCACCCCAGCAGCTGAGGAGGGGATTCTGGAACCGAATGGTGCTTCGGGATTCTGAGTACCAGGGGCAGTGTGCCCAG-------TGGGCATGGGGTCCCAGGAGGGATTCCGGAAT-TGAGGGGCACGCAGGATTCTGAGCACT--------AGGGGCAGAGGCGGCCAGACAACCTCAGGGAGGAGTGTCCTGGCGTCCCCATCCTCCAAAGGGCCTAGGCCCGCCCCGAGGGGGCAGCGAGAGGAGCTTCCCCATCCCGGGTCAGTCCACCCTGCCCCGCCCACTTTCCCAC--CTCCTCGGTATAAATCAAGTTTATAAGTTATGGAAGAACCAGGACATATAACAGAAAAAAAAAAAAAC-------AACAAAAAATATACGTGGGAAAAAAAAAAGA s mm3.chr8 96613744 1225 - 128923138 AAATAGCTCTTTCTGGTTCTGATGGAAGGTGTCAAACTTACAGTCAACAAAGGGTTGAG-AACCATTTC-AACTGACCCACACAGTAGCCCTCGGCACCATTGGGGAGTCCAACTACCACTTCGGGGTCACATATGTGGGGACGAAGTAGCTGAGTCCCACAGAGACGTTGTCTGTGCTGGTGGATGACATGGACAATAGTGGCAGCCTCAATGCACAGGTCACCCACCAGCTGAGTCCAGGTCTCACATCCAAAAGGGCCATCCAGACCCAGCAGTCCAAGTTCGTGAACTGGCAGGTGGATGGCGGGTATGGTGGCT-------------GCTGTTACCTTGGGCAACCCAGATGTCTTGGTGGATTCCGGAATCCTCCTGGCCTACTACCTCCAGACCATCATACCTTGCCTGGCCCTAGGTGGAGAGTGCGTCTACCACAGGCCGCCTGGAGAGGAGGGAGGGCACTGTCATGTCTCTAGCTGGGAAATACACACTGAACAACTGGTTGGCTACAGCAATGCTGGACCAGGCTGGCAGGCATGCGACATATTATCACAAAGCCAGTGACCAGCTGCAGGTTGGTGTGGAGTTTGAGGCCAGCACCAGGATGCAGGACACCAGTGCCTCGTTTGGGTATTAGCTGGATCTGTCCAAGGTCTACTTCCTCTTCAAAGGCACTGTGAACAGTAACTGGATCGTGGGCACCACGCTGAAGAAGAAACTTCCGCCCTTGCCCCTGACACTGTCCCTCTGCGCCTTCCTGAATCGCTGCAAGAATAAGTTCCTGTGTGGCTTCGGCCTCACCATCAGCTGAGCCCTCCTGTCCTTCCTCTGC------------AGGCCACCCCTGGGCCAGCTGCC------------------------CTCCCCTCCCCTCCCTCTCTCTT--GGGGTTGGGG----CAGTGGAAAGGAGCGAAC---CTACCCCA--------------------------------TGCCCGAGGATCCCCAGCACCAGGGGACAT-TGTCCAGGGGTCCCGGGTCCCGGGGTCCCAGAGGGAGTTCTGGGATCTGAAGGGCATTC--GATTGTGAGCACCCAGGCAAGAGGCACAGAGGTGGCTGTACAGTCTCAGGAAGGAAAGACTTGATGTCCCCGTCCTCC---------------------TGAGGGCAGC-AAAGGAGCG--------CCGGGCCG-----------CCTGTCACTTTTTCCTCCACCCCTCCATAGAAATCATGTTTATAAGTTATGGAA-AACCGGGACATTTTACAGGAAAAAAAAAACACCTTaaaaaacaaaaaatacacatagagaaaaaaaaaaa a score=111564.000000 s hg15.chr22 14504286 869 + 49476972 TACACCATGCTTATCTAAGGCTTTTAGTACCTCCTGTCATAGTTGCATATATGCCAGATTGAGGGGCACAGAACTAGGGGAATTTGATAAAATGCTCATTATACAGAACTGTAATACCTATTGTGGCATTTTAATTATGTAAAAGCTTAATGAAATACTACATAAAAAGATACTGTTTATTTTTCTGATAGATTTCATA------GCACTCCGTGGTACTGAG-ATTTTCTAAAATT-----TAGAAAACA---ACATTAGTAATTATATTTGTCTACTATAGTAAGTATATTT--TTCTTCTTTCACTCTTCAGGTTTTCCATTAATATAAAAAGTAAAATTTCCATACATTTCCATTTATTT---TAAATCAAAGTAGTGTCAACAAATCTACATTACCTATAGAATATAAAGAGAAGTATGTGAAACTTTATAAACTTTTAAGTTATACTTCCCTAACAATCAACCCCATACCTGCTCTCATGTCATCTACAGCACTCATTTTCAGCAATACTTGTTTAATTAGCCCAACTTCTGTGCTAGTCTGTACATTCCAAACACTTTTTCATAGAATGGCTGTAAACATGCTCCCTATTTCTGCTTGACATGTTACATCACAGTGCTCTAAAAGCTCTGTCATGCGTATTATACTCTCAGCATCCTGGATAATAGAGTTCATCTCCAGTTCAAATTCTCCACCAACCAGCTGAAAGTAAACAGAAAGAAACAAT----------AGTGTTAACATGGGAGGTTACTGATAACAGTAGAATAAAATA---------------ATAACAAGAGTTCAAATCTACTACTCTAAAAAAGTTTCAAGGCTTTTGGTGTAAAATTACTTTTTATAAAAAGTATAAGAGCTACAGATAAATGACAGGCATTGTAAGCATTGAA s mm3.chr3 56280224 844 + 160674399 TCCTCTGAG-------AAGACTTATCCTGCTGATTCTGCAGGCTCCAGGTGCAGCAGCTTGGGAGGCTTGGAGCTGGAGGAACTTGGTGAATAGCT------------CTGAACTACATATTGTAATATTTTAAATGTGTTGTAGTTCAGTTATATGTAACAT-AAAAGATACTGTTTGTTTTTCTGATA-ATTTCCTATTGTTTTTACTCCATAGTACTAAGAATTTTCTAAAACT-----TGGGGGAGGGGTTGTCTAGTATTTATGTTTGCGCAGCACAAT-------TTTGTTTTCTCTTCTTGTCTACACA-TTTACATTAATATAAAAA-------TGTCATATATTCTTACTTATTTATACAAATCAAGGCAATTTCTACAAATCTGT-TTTCATGTAGACTATCA--AGAAGTCCCTGAAACCCTGTAACCGT--AA--AGCACTTTGTTATCAGGTCA-CACTTACCTGCTATCATGTCATCTACTGCACTCATTTTCAGCAACACTTGCTCAATTAGCCCCACTTCTGTGCTGGTCTGTAAATTCCGAACACTCTTCCGTAGGATGGCTGTAAACATGCTCCATATTTCTGCTTGGCATGTCACATCACAGTGCTCCAAAAGCTCTGTCATACATGTTATGCTCTCAGCATCCTGGATAATAAAGTTCATCTCCAAATCAAATTCCCCACCAACCAGCTGGAAGTAAACAGGGAAGAAGAAAAACTGTAAGCAGAACTGACATGGGAGGCCATTTCCAACACCAGCAGAGAATAATGCCATACCATCGAGTATCAAGGAAGCGCGGACACTAATA------ATTTTCCAAGTCATTTTCATAAAGCAAATTTTGGTCAAA-GTTTAAGAGTTAATGATAA--------------AAGGAATGAA s rn2.chr2 140629416 845 + 246339213 TACTCTGAA-------AAGGTATGCCCTGCTGATTCTTTAGGACTCAAGTGCAGCAGGTGGGGAGGCTTGGAGCTAGATGGATGTGGCAAATGGCT------------CTGAACTACATATTGTAATATTTTAAATGTGCTGTAGTTCAGTTATAGGTAACAT-AAAAGATAATGTTTGTTT--CTAATA-ATGTTCTACTGTACTTACTCCATAGTACTAAGGATTTTCTAAAACTGGGAGTGGGTGGGTGGTAATCCAGTAATTGTGTTTGTACAACACAAT-------TTT--TTTCTCTTCTCGTCTACACA-TTTACATTAACATAAAAGA-ATATTTGTCATATATTCCTATTGATTTATTTAAATCAAGGCAATTTCCACAAATGTGT-TTTCATGTAGAATATGA--AGAAGTGTGCAAAGCTCCCTAGCCATCTAA--CGCCCTTGTTTACCAGGCCA-TGCATACCTGCTATCATGTCGTCTACCGCACTCATTTTCAGCAACACTTGCTCAATCAGCCCCACTTCCGTGCTGGTCTGTAAATTCCGCACACTCTTCCGTAGGATGGCTGTGAACATGCTCCATATTTCTGCTTGGCATGTTACATCACAGTGCTCCAAAAGCTCTGTCATGCATGTTATGCTCTCAGCATCCTGGATAATAAAGTTCATCTCCAAATCAAATTCCCCACCAACCAGCTGAAAGTAAACAGGAAAAAAAAAA----GTAAGCAGAATTGACATGGGAGGCCATTTCCAACACCAACACAGAATA---TCATACAGTCGAGTATCAAGAAAGCATGGACACTAATC------ATTTTCTAAGTCATTTTCATAAAGCAAATTTTGGTCAAA--TTTAAGTGTTACAGATAA--------------AAGAAATGAA a score=50709.000000 s hg15.chr22 14506181 558 + 49476972 AGAAATCTAATTTTCACATAAATGGGAAAGGGTGAT------TTcaaatctagtaaa----tcagagcaaactacagcatgtgattcct-------ggatgggattcaggaaaaattcctaaaaagagggtttggcctttaaaagtgataatcaacagaaaatatagaatttactaaggataaattttaagacatgaaattcattttcctttttgatattactaGTCTTACAGATAAAGAGATGT--------------AACTGGGGCATAATCTCCATATATAGAAGATGAAGAAACATGAAACTGAT------ACAACTTACAATAAATGTTGCAATAATGAAATGAATGTTAAAAATAAGTTGAAC--AGAAATATGCAAGGTCTTGTAATGCTTTTTTTTTTAAGCACAAATGTGAATTGGGTAAAGAAAGCTGATTTAACAGCAACACATTTGACTTCAATATTATGGCAAATGAGTCCAAAGTCATACTGCCCCTCCCGTT----TGGTattttaa------------------------gtacagtaatagacaaatacacacagaataaaataacataataatactctgttactctctgttgatcgaatcccataag s mm3.chr3 56281068 556 + 160674399 AGAGGTTTAATTTTTACAAAGGTGG--AAGGAAAATAGTAAATTCAAGTCTAGAGAAAGACACA---CACACACCATCAAATAATTGTGGGAGTGAGGAGGGGAATCAGGACAAACTCC----------------CTTTTTAAAAG----ATCAGAAGAAGAGATAGAGTA-TCTAAGGATAAATATTAAAACA--AAATTCACTTTTA-TTTT-ATCTTATTGAACTTATAGGGGAAAAAAAGAGATGTAATAAAGAGGAGCTTGGTTCAATTTCC--ACATGAAAAATGAAGAAATATGAAACTGGTGCAAGAACAACTTACAATAAGTGTTGAAAAATTAAAAAGAATG---------ATTTGTACAGAGAAATATGTAAGGCCTTATAA------TTGCCTAAACCATAAAATTAAAAAGGGGA---GAAGTAGATTTACTGTCAATAT-TATGAC-------TTGTGGCAAATAATT--CAAGT--TATCACTGTTTCCATCAACATGCTACTTTGAAAACCATTACCAGCCCCACTAAATGCATAGTACTGGA--AACACACAGAGAATAAAATATTATGAC-ATGT----TTATTCTCTGTTGATCAAATCACATGAA s rn2.chr2 140630261 529 + 246339213 AGA-GTCTAGTTTTTACAAAGGTGG--AAGGAAAAC----------AGTCTAGAGAA----ACA---CACACTATAGGAGATAATAATGGGGGTGGGGAGGGCAATCAGGACAAATGGC----------------ATTTTAAAAAT----CTC---AGAAGAGATACAGTAGTCTAAGGATAAATATTAGAACA--AAATCCACTTTCATTTTT-ATCTTATTGAACTTGTAGAGGAAAAAGAGA--------------CAGTTTGGTTCAATTTCC--ACATGGAAAATGAAGAAATATGAAACTGATGCAAGAACAACTTACAATAAGTGTTAAAACATT-AAAAGAATG---------ATTTGTACAGAGAAATATGTAAGGCCTTATAA------TCTTCTAAACCATAAAATTAAAAAGGGGA---GAAGTAGATTTACTGTCAACAT-TATGAC-------TTGCGGGAAATAATTAAAAAAT--TACTACTGTTTCAATCAACAAGCTACTATGAAAATCATTACCAGCCCCACTACATGCATAGCAACAGATGACCACAAAGAGGATAAAGTATTATGGT-GTAC----TTATTCTCTGTTGATCAAATCACATGAA a score=58939.000000 s hg15.chr22 14506743 729 + 49476972 attatattcggttataagcatcattcttaaaaaagaacactgtcaaactggaTATCCTTTTGGTCTAAAGAATGATAAGATTTAGGAATAAAATAATAAT----------------CATATACAACACCTCACAAATTCAAAGTAATTAATTCCtttgttcattcaataaat-aatttattaaggtctagaagttactgttctgggaactagaatatatgaacatccaagataaagaccatgcact-aacagtgctaaattctagGAACAAAGATTTATATGTATGTATGCATACACTACTTTATTCCAAAAAAACACTGAAGGTGGCTACAAGTTA--------------------------------------------------------------------TGTAAAGCATGAAGGAAGGCATAAAATATGAGTAGATGAGAAAAGAGGAAGCAAAGGAAAACAAGATTAGGAACAGACAGGGAGTAGAATTAGGATCAAGAAGTAGAATTAATTTCCTATCAC-TGAAAGGTATTCGCAAATACGGACAGGTCACCACAGAATATGATATAAATAAGATAAATAGTAACAATACCACCACCTAACCTTACATGGCGTTTAGTCCTGTTTTAAAGGTTTTACATCCATTATgacactattcttatcttcattttacagagaaggcatcataggcacagagttataagtatgttgaagaatgttacaaaaccggtaagagacccaggatccaagcacaagacgtctgtcttcGTGCAAGTTCATATAAACATTACAATCTCATTT-AAGAATAT s mm3.chr3 56282209 656 + 160674399 GTTACATTCAGCTAGAAACATTATTCTTATTGTATAATGATA--AAAATGAATATTCTTTTAGTCTACAGAATAA-AAGATTTAGGAA-AAAATACTTGTTT--------------TTTTTTAAAAACTTGGTATATTTGAAAAT----ATTCATTTGTTCATTTAGTAAGC-TGTTTTATGATAACTA-----------TTTTGGAACTATTAAATACTAATAGACAAGAAAAAGTTCACACACA-AAGAATGGTAAATTCCAGGAAGAGGTATAAATATGCAT------ATAAACTATCTTATTT---AAAACCAGCAA----GCCCATAAAATA---------------------------------------------------------------------ATAAAGCATAAAGGCTGCTTTAAAATAAGAGTAACT--GTAAGGTGAAAGCAAAGGAAATCAA-ACT--GAAAAGACAGGAAGTAAAAC-----TCAAGAAAAA-----CATTTCCTACTACTTGGA--GGATTCCCAAATCTAGACA------AACAG-------CATTAACAGGGCAAATGATGACAGCACCACCACCTCACCTAGCACGGCA-TCAGAACTA-CTTTACTGCTTTAAATCGTTTAAGAGTCTATTATTGTATTTACTTTAATGAAAAAGAATCTTAGGAACAGAGTTAAAAA--TCTTGAAGATATTCATTG----GGTGGGGGATCCAAGGTCCAACTGTGAGAAGACTGTCTATATGAAAGTTTATATAA-----AAAATATCATTT-AGGAATAT s rn2.chr2 140631291 740 + 246339213 ATGACATTCAGCTAGAAACATTATTCTTATCGTACAGTAAT---AAAATGAATATCCTTTAAGTTCACAGAATGA-AAGATTTA-TAA-AAAATAACTACTTCAGTTAGTGATATATTTGATATATACTTGGTATATTTGAAAATATTCATTCATTTGTTCATTCAATAAGCACTTTTTGTGATACCTA----------TTTTTAGAACTATT--ATATTGGTGGAAAAGAAAAAGTTCACAAACCTAACAAAGGTAAATTCCAGGAAGAGATGTGTACATGTAT------ATAGTCTATTTTATTC----AAACCAGTAA----GCCCATAAAACACTAATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcgcgcgcACATAAAAATATATAAAGCATAAAGGCTGGTTTAAAATAAGGGTAACT--TTAAAGTGAAAGCCAAGGGAATCAA-ATTGGGAACAGACAGGAAATAACAC-----TAGAGAAACA-----CACTTCCTACAAC-TGGA--GCATTCCC-AATCTAAACA------CACAG-------TATTAACAAGGCAAATGATCTTAGCACCACTACCTCACCTAGCATGGCA-TCAGTACTA-CTTAACTGCTTTATGTCTTCTAAAAGTCTATCATCATATTTACTTCAGTGAAAAAGAATCTGAGGTACAAAGTTAAAAA---CTTGAAGACTGTCATTG----GATTGGGGCTCCAAGATCCA------AGAAGACCACGTATATGAGAGtttatataaaaaataaaatatCATTTGGGGAATAT a score=4135.000000 s hg15.chr22 14514177 31 + 49476972 ttattccttactacacctatctattgaatgt s mm3.chr3 56381138 31 + 160674399 TCATTCAGTATTGTGCAGGTCTATTGAGTAT s rn2.chr2 140728523 31 + 246339213 TCATTCAGTGTCGTGCAGATCTATTGCGTAT a score=3827.000000 s hg15.chr22 14514208 28 + 49476972 attttgcaagccatgtgtagtttcaagg s mm3.chr3 56381499 28 + 160674399 ATTCTGCCAACCATGGATGGTTCTAAAG s rn2.chr2 140728869 28 + 246339213 ATTCTGGCCACCATGGACAGGTCTAAAG a score=2359.000000 s hg15.chr22 14514236 110 + 49476972 tacaggaaatgtagcggtaaatgaaacaaagtccctgtcctcat---atagcttatgttctaatacaggtca--------cagacaataaactagtaaaatgtatataaataatatgattt s mm3.chr3 56381527 115 + 160674399 AAAAGGAGATGCAACAGGGAAT---ACAGAGTCCCCATCCTTATGGGAAAGGTCACCAAGTTGTAGAGTTCAGCACCTTGCAGACAGTGAACTGATAAAATCTACATGAATACTAT---TT a score=59428.000000 s hg15.chr22 14514346 733 + 49476972 cagaaaatgataCTTTTTTATGGTATTTATTTTTATGAAAAAAATATAGTCTTGTAGTAATTTGTTATACAATTTTTTCCTGACTACCTTAGCACTACTTGAAGGCAGGGACTATAGCTT----ATAAATAAACTCTGCAGCAATAAGCTATGCTCATTGATT----GATACATGGTAAATACTT-------GATAAATGTCTCAATTAA--GGAAAGAAAGGAGGAAATAACTTAAAGGTAAAAAT---------TCAATACATTCAGTAGTTTGATACAGATTACTTACATTACAAGGCAATGTCACATATTAAAGGAAGAAAAACAAAAGGTTTTAAAGTCAGAATAAAAT-CATTCCTCTAAAGGACTGTTAAATTCCCTAAAACATGATTTTGGGGGAATAATAAGGTCCTCAAAACTAGCATTCAAAGTATTAAACCATCATTGTTGTGttaagtaaattatttggcctcttggagtcttgattttcttaccaatgaaataggaatgaGAGCATAGGAATGAACAGCTCTCATTATAGAAAGGGGTTGTAAGCACAAATGAGATAAATTATGATCCTTTGAAAAGTACAAAGTATTACAGAGAAAGCAATAGCATTAATTCTGGCAGCAGTCTGGAATGGAGCAGTAATTCCAGTCATCTGGAAATACAGGCAG---TAGTGAGTCATGGCTACAGACTCAGAGCAGGGAACTGGTTTGGATAAAGTGTGTG-ACAAGTTGTGGGGGATATTAAAAGG s mm3.chr3 56381642 630 + 160674399 CAGAGGATTATAACTTTGTGT-GCATTCATGGATAGAAACTGACAGTGGTGGTGTAGTCACTTGTTAGACATTTTACACTTGGTT------------------------GACTACACCTTTCTAACAAGTAAAGTGTTTAACAGTATCTTAAGCTCAG--ACTCTAACATACAAGCTTGAATCTCTAAAGAAGATAAACAGCTCTATTGA--AGAAAAAAAGGTGAAAGAAGGTAAAAAATAGAAATGTCAACAACTCAAAACTCTCAACAATTTGATATAAATTCCTTGCACTAC-AGGTGAGATTAACTATTTTAAAAAAA--------CAGTTCTAATATGAGAATAAAAAACATTCT----------------GTCCCTTTACACATGCATATTAAG---GATTGAAATCCTCAAAGTTGG----CAGAGT----AACTATAAGTGTTTGGT-------------TGGTATCTTTGGATCTCAGTTTTCTTATTCATGAAGTAAGAGTG-GAGTATA--------------------------------ATAAACTTAGATACGATC-------ACACTTTGTAAAGCACAAAGTGTCACAGAG--AGCAGTGAC--TAACTCTGGCACT--CCTGAAGGGAAGCAGTGATCCCAATCACCTAGAACTGAAGGCAGGGTCAAAAATTCAGGGCTATAGACTCCAAAC-------TGGTTTTGA---AATATGGGTACATGATGTCAGGGCAATGAAAAGG s rn2.chr2 140729552 647 + 246339213 CAGAGGATGATAACTTTGTGT-GCATTCGCGGATATAAACTGACAGTGGTGGTGTAGTCACTTGTTAGACATTTTACACTTGGTT------------------------GGCTACACCTTTCTGACAAGTAATGTTTTTAACAATATCTTGAGCTCAGTGACTCTAACGTACAAGCCCGAATCTTCGAAAGAGAAAAACAGCCATATTGAGAAAAAAAAAAGGAGAAAGAATTTAAATAATAGAAATGTTAACAACTCAAAAATCTCAACAATTTGGTATAAATTCCTTGCACTAC-AGGTGAGATTAACTATTAAAAAAAAAAA---AAACAGTTCTAGTACAAGAATAAAAA-CATTCC----------------GTTCCTTTACATGTGCATATTAAGAAGGATTGAAATCCTCAAAGTTGG----CAGAGC----AATCCTCATTGTGTGGT-----------------ATCTTTGGATCTCAGGTTTTTTATTCATGAGGTAAGAATG-GAGTATA--------------------------------ATAAACTTAGATGCGATC-------ACACTGTGTAAAGTACAAAATGTCATGGAG--AGCAGTGAC--TAACTCTGGCACT--CGCAAAGTGAAGCGGTGACCCCAATCGCCTAGAGCTGAAGGCGGGGTGAAAAATGCACGACTTTGAACTCCAAACAGGAATCTGGTTTTGATGAAACATGGCTACATGACATCGGGGCTAAGAAAAGG a score=247247.000000 s hg15.chr22 14515397 2271 + 49476972 GAGCTAGGCAGGTTCCACACCCAGAGCTAGTGGTCAGGAATCAAATGGCAAGGAATCAAATCTAGTCATACAAGCCACAGTCGGGTCAAACCT-----------------------------------------GAAAAGACAGTTGCAGTGACCATGGATCCTCAAGAACAGAATAGGAAGGCAATATAAAGTTTGGTAAACAGTCAGGAATCTGGAAATGTGATGAACAAAAAGAAGGATAATGTAAATGAGAGGCCAAATTTGAGATCTTCAAAAATGCAGCAAGGCAGTTTTGTGCATCAGCTCCAGTGTATGTATAAGGATCCTT-TGAAGGAAAGCATTCA-CTCTTGAGGAGCAGGTGCTCAGGATTACATGATTGAGGTAAGGGAATGTAGGTGGAGCCGAACCAACACTTTCTCCTCAAGAAAATTCTGGCAATAAATATCTTAGCCAGTTTTTAGAAGAATCTTTCCAGTCATTCATTTTCTAATTGGACAGCAAGATAAAGCTTCATCAAATCTCTAGACAAATTTCCCTTGGGACTTATGCCATGTTTTCATGATACCACAAAATATTTTGAAAGTAAAAAAACTCAATCGTCGATGTATGCACTCATTATTAGATCCTCAGTATGTATGGTTTCAGCTATGAATGAAAGCATTGCCTCCTTTCTTGT------TGACCTGAGTTTACTAAGTAATTGGCTAAAGTTAATTAATGAATCAATT---GTACTGTAGCAACATGCATGTGAA-----TGCTAGGCAAAACC----CTCCTGTGGATGGGAGAGAATTACTGTCTTTGGGTAACTGTTTGTTTGCTTTCTATCTCTACATTCAAAACTGACCAAGGAATGCCACTAGCTAGACATGTGTAGTGACTACCAGTGAACCTCAGGGAGGCTCACTCAGGACTGGCTACCCCCAGGATGGAGGGGTGGCATGCCAGTAAGGAACCTGGCCTTAGCAGCAAGTTGGTTT-----------TTTTTCTGCAAGTATCTTCTATTTCTTCTCCAACCAATTTTGTTCCCCTTGGTTCTTGGGAACCATTATA--CTGTTAGGTTAATGGATCATTGGT-TTATCCACCTGTACATTTCCTGAATTTTGGCCATTCAACCATGCATTCCTGGTGACTGGGTTTATAAGTATTAGTTTCCTAGGTCCAACACCACATTTGGATATCTCTTAACTATAAATTGGTGTAGTAACCGTGATATATCAGCATAGAGATGGCTCCATCCATTAAAAATAT-ATTGGTATTGGTGGTTTCAAAAAATTGTATATTTGTTACTGGCATCTAAAACAAATGAATGGCCAGATACAA----AATTGTACAGAACCCAGATTAGTATCTAATAAAGAATTAATAAAGAATATGAATTAATGTAGATATATCCATTTACATATTAATTGTTTTTTTCAAATTGGCCAAATTTTTCAAAACAATTACATATTAAAAACTGAGATATACGGAAATTCTAACTAATAGGTTTATAGTCATTCCTAGGGTAGGC---------ATTAACACTTCTTGGTAAGTTCTGTAAGTTAATTATAGTTTAACTTCCTAATTAATTAATTCTGTAAGTCAATTTATAGTTTAACTTCCCAGAGGCTTTGGTGTCTTTTTTTACCCTCACTTTAAAATACACACAATAGTATATAATATATCACATTTGGTCAACAGTTCAAATTTTTTTATTCT-------------------------------------------------------------------TTAAAGCATGTACAAAAAATATACTAGTTAGAATTCCTGTGAAAAATTCTAATACAGAGGAATTATATGGCTATGTTTGGAAAGATAA--TATT--TCTTTAAAAATGTGTTTTCTTTATGTTT-----TATGTTTGCAAT----------------------------------AAGGATTA-----------------------------------------------------------------TTT-------------------------------AAGTTTGATTGAAGAACTTCATGATTCTTATGTATTA---TTTTCTTGTATTGAGAAATAGTGGCCCATTGTTGGGCTGTATTTAAAATTAATGTGTATGAAACAAGAAATATTTAATTAGAGTTATTAATTTTCCACAAGTA----ATATGTGTACTTGACCTAAATCAGTATC-TTTTATCATATCAGCCTCACATACAACAAGAATAATAGCAAGGACAACAACAACAAATTTGAATGTTTCCTTTGTGCCTATGCT---CCTAACTATCATGTTATACTCATTCATATAAACCTAACAATTAATTTGAAGTTAGACACACAGGATTTACTCATCAGTATTAGAGCATTCGCTGTTATCCAGGAAGAAAACTATCCCTGGTGCTGAAACTGCTCTGTGTAGTCCATGCGGTTGAAGAATTAAA--AGTCTCTTTTAGACATTTCCTTTCATTGAAATTATGAATTGGATAAGTGTTCATACCTTAAAGGAAGTA s mm3.chr3 56382272 2191 + 160674399 GAAAATGGCAAGTTCAATGCTCAGATGCAATGGTTGGGAAGAGAAGGTCAA-AAATCTGAACTG---CTACGACAAAAAGTTAAGGAAACCCC------------------------------------AGAAAAAAAATATAGTTGAGGCAAAAAGAAATCCCC-AGAGCAGACCAGAAAGGCAGACTCAGGCTGGGCAAAC--------ACCTGGAAACATAATAAACAAAATGAAAGA-----TAAACAAGTGGCCAAGTTTGACAGCTTCTACAG-GCTGCCTGGGAATTTTGCACCTTATTTCCAGTGTTCTCATACTACTCTTTGGGAATCCAAGCCTAAAATCTCTGAAGGATAGATGCCCTAGAGCAT--------------------------------------------CTTCT-AGGAAAATCCTAGCAAT--------------------------------------------------AGTGGACAGCAAGACGAGGCTTTGTCTGATCTACAGACAAATGTCCCTT-GGCTTACTGCTGTGTTTTCATGATTATGGAAACTGTTTTGAAAGTAAAGAACCTAAATCAGGTGTTTATGCACTC---ATTAGATACTCCATATGTATGATTTCAGATGGGAATGAAAACATTTTCTCTGCTCTTGTGTCTTATGACCTAAATTTACTAACTTCCTCCCTCAAGTTAGTTGACAGATAAACTCAAGAAATGTATGTGTAAATGTTTCATGTAGCTGCTTGGCAAAACAAACACTCCTTTGTATGGGAACAAATTACTCTCACTAGGTAGC----TGTTTGATTTCTATTTCTAAATTTAAGACTGACTACCAGATG-TGCAAGCCAGTTGTTGGAAGGGATCACCCATGAACCCCAGT--------CTAAG---------CTTTCTTGATGGAGAAGTGGTAAGCTGGTAAA---------CTCAGGATCAAATTGGTTTGGGATATTGGCTTTGGTTTCCTGCATCTTGTACTTCTTTTCCAAAGAACTTTGTTCCCCTCAGTTCATGAGAACAGTTACAGGCTATTATGCTAATGGACCATTGGGAATATGTGCCTGCATATTTCCTAAATTTTGGCCATTTGACAGAGCATTTCTGGTAATTGGGTTTACAAATGTTAGCTTTCCAAGTTT-TTATTGCATTTAGACATCTGTTAAATTTAAATTGGCATAATAACTAAGTTGTGTTGATATAAAGATA----CTGCCATTAAAAATGTCATAGGGATTAGTTGCTTCAAAATGTTTTAGATTTGTTATTGGCATAT-TAATAAGTAAATGACCAAATGTAATATTAACTGTGCAGTATCAGAATTTGTTACTAATGAAGGATAGGT-------ATTAATTAATTAATACATGTTTATTTAAATGTTACAG--TTGTTTCACA-TGGCGAACTGTGTCAAAATAATTACACTTAAAAGGTGAAG--ATGAAGAAATTCTAGTGCATAGATTTTCAGTCATTC--AGGGTAGACAATTAACCAAGTAATCCTATTTGGTAATTTCTTTGTGCTAA------------------------TAATCCTACA-----------AGCTTAACTCCCTAAAGGTTTTAGTCTCTG--------CCCATTTAGAAACATGTACAA---CATGTAATATAAT-----TAGTTAACAGGCC--ACTGTTTTATTC--------------------------------------------------------------------TTAAGGCA--TATAAAAAGTCTAACTG--AAAACTCACATGAAAACTTTTAATTCACAGGCATCCTATAGCTATGTTCAGGAAGACAATTTATTAATCTTTAAA---GTGCTATTTTTATGTTTGTAAGCATTACTGAATTTGGAAGAACGTCAATTCATACTTTTCTTCATCCCAAGGACTGAACATAGGGCCTCACATGGGCCACATTCCCAGCCtatagcattggaaatgtaaatgagctaaatacctaataaaaaatggaaaagaaaaAAAAAGAAATAAGTTTAAAAAAAAGATTTC---TTTCATATGTTTTGTACTCTTCTAATATTGAGAAATGCTAGTCCAATCTTATGCTATATTTAAGCTTAGAATGTA-AAGCCTAGAAATATTTAACT--GATCATTAATTTTCCACATATATTGAGTATCTGTAATGAACTTACA----TATCTTTTTGTTACACCATCTTTCCATATAACATGAAGAGCA-----------------------GACTATTTCTCCTGTGACTGTGCC---CTTA---ATAATGTTATACTCATTCATATGAACCTAGCAATTAATTCGAAGTTAGACACCCACCACTTACTCATGTGTATTGTGATATTCACTATTAGCCAGGGATATTACTCTCCCTGGTGCTGAAAATG---------------GAAA-TGGAAAACTGAATCAGTTTCTCTAAGATGTAACCTGCCATTGAAACTACTCAGTGGATAAATATTCATACCTCAAGTAAAGTG s rn2.chr2 140730199 2255 + 246339213 GAAAATGGCAAGTTCAATGCTCAGACCCAGTGGTTGGAAAGCGAAGGACAA-AAATCGAAACT------AAGAGGAAAAGTTTAAGCAGCCTCCCTCCCTTCACCCCCACCTCCGTGCCCCCTCCCTCGGCCAAAAAGAAATAGTTGAGGCAAACAGGAATCCCC-AGAGCAGAGCAGAAAGGCAGACCCAGGCTGGGCAAAC--------ATCTGGGAACATACTAAACAAAACGAAAGA-----TAAACAAGAGGTCAAGTTCGACAGCTTCTGAAG-GCTATCTGGGAATTTTGCACCTTGTTTCCAGTGTACTCATATTGCTCTTTGGGAATCCAAGCCTGAA-TCTCGGAAGGAAAGACACCCTGAAGCATGTGTTTGCAGAAAGAAAATCT--GTATAGTC-AACCAG---GTTCTCCT-AGGAAAGTCCTGGCAAT--------------------------------------------------ACTGGACAGCAAGACAAATCATTGTTTGATCTATAGACAAATGTCCCTTAGGTTTAATGCTGTGTTTTCATGCTTCAGCAAAGTGTTTTGAAAGTAAAGAGCCTAAATCAGGTGTTTATGCACTC---ATTAGATACTCCATATGTATGATTTCAGATGGGAATGAAAACATTTTCTCTGCTCTTGTGCCTTATGACCTAAATTTACTAACTTACTCCCTCAAGTTAGTTGACAGATAAACTGAAGAAATGTATGTGTAAATGTTTTTT-----TGCTTGGCAAAACA----CTCCTTTGGATGGGAACAAATTACTCTCATTAGGTAGC----TGTTTGATTTCTATTTCTAAATTTGAGACTGACTACCAGATG-TGCAGGCCAGTTGTTTGA-GGGATCACCCGTGAATCTCAGT--------CTAAG---------CCGCCTTGATGGAGAAGTGGCATGCTGGTAAG---------CTCGGCATCACATTGGTCTGGGGTTTTGGTTTTGGTTTCCTGCATTTTGTACTTCTTTTCCAAAGAACTTTGCTGCCCTCTGTTCATGAGAAGCGTTACAGGCCATTATGCTAATGGACCATTGGGAATATGTGCCTGCATATTTCCGAAATTTTGGCCATTTGACAGAGCATTTCTGGTAATTGGGTTTACAAATGTTAGCTTTCCAAGTTT-TCATTGCATTTAGACATCTGTTAAATTTAAATTGGCATAATAACTAAGTCGTGTTGATATAAAGATA----CTGCCATTAAAAATGTCACAGGGATTGGGTGCTTCAAAATGTTTTGGATTTGTTATTGGCATAC-TAATAAGTAAATGAACAAATTCACTATTAATTGTGCTATATCAAGATTTGTTACTGATGAAGAATAGGT-----------ATTAATTAATACATGTTTATTTAAATGTTAGGGGTTTTTTTCACA-TGGCCAACTGTATCAAAATAATTACACTTGAAAGGTTAAG--ATGAGGAAATTCCACTGCATAGATTTTCAGTCGTTCTTAGGTTAGACAACTAGCCAAGTGATCCCATTGGGTAATTTCTTTGTGCTAA------------------------TAATCCTACA-----------AGCTTAACTCTCCAAAGGTCTTAGTCTCTG-------CCCCATTTAGAAACATGTATAA---CGTGTAATATAAC-----TAGTTAACAGACC--ACTGTTTTAGTCTTAAATTTTTAGTTCTGAGCCTAGACTTTAACGGCTGAGCCATATCTCCAGCCCCACGGTTTTATTCGTTAAGGCA--TAGAAAAAGTCTAACTGAAAAAAATCACATGAAGAGTTTTAATTCACAGGAATCCTATAGCTATGTTCAGGAAGACAAGTCATTATTCTTTAAA---GTGCTATTTTTATGTTTGTAAGTACTTCTGAACTTTGAAAAACTTCAAATCATACTTTTCTTCATCCCAAGGACTGAACATAGGGCTTCACACATGCCACATTCCCAGACT------------------------------CCT------------------------------------------TAAGATTTT---TTTTATATGTTTTGCACTCTTCTAATATTGAAAAATGCTGGTCCAATCTTATGTTATATTTAAGCTTAATATGTA-AAGCCTAGATATATTTAGCT--GATTATTAATATTCCACATATATTGGGTATCTGTGGTGAATTTACA----TATCTTTTTATTACATCATCTTTCCATGTAACAGGAAGGGCA-----------------------TAATATTTCTCGTGTGACTGTGCCCTTCTTA---ATAATGTTATATTCATTCATATGAACCTAGCAATTAATTTAAAGTTAGACACTTACCACTTACTCATGTATATTGTGATATTCGTTGTTAGCCAGCAATATTACTTTCCCTGGTGCTGAAAATG---------------GAAATTGAAAAAATGAATCAGTTTCTCTAAGATGTAACCTGCCATTGAAACTACTCATTGGATAAATGTTCATACCTCAAGTAAAGTA a score=9576.000000 s hg15.chr22 14517668 194 + 49476972 TTAAATTTCACATATGTTA------------------------------------------------ACATCTTA----ATTAATATAAGATTAATATTCTACTTATGACTATGTTATAAT-----------------ATTGAAAAATGAGTTTATGATGAGTTTCATTAGTTTCT---------------AGAGAAAACAGTGGTTTAAAAAATTTCAGTC--ATAAGACATTGAAGAGTCTATGACTGTTCCAGAAATCTGAAAACATA-TACCACTAA s mm3.chr3 56384694 269 + 160674399 TTAAATGTAACAAATTTTA-----AGAAAAAATAGACAAAACATTT-----TAAAGGAATGACTTTCACATGTTAGTATATTTATGTAAG-TAAATATGTTAGTATATGTTATGTTAGTATATTTATGTAGTATATTTACTAAATACTCTCCttatttttattattataatattttattGGAAAATTGTTTATAAGACATAGCAGTTTAAAACAAATTAGTAT-ATTGGACATCAAGAAATGTTTAAATGTTCAAGATGTCTGAAAACATATTACCACCAG s rn2.chr2 140732669 239 + 246339213 TTATATGTAGCAATGTTTACATTTAGAGAAAATAGAACAAATGGTCTAAAATAAAGTAATAAATCACATATGCTAGTATATTAATGTAAG-GCCACA-----------------------------------------ATTAAATATTGTGCTTGTTTTTATTATTATAACATTTTTGCTGGAAATGTTTGATAAGACATAGCAGCTGAAAACACATTAATATGACTGGATACCAAGAGATGTTTAAATGGTCAAGATGTCTGAAAACATATTACCACCAG a score=6555.000000 s hg15.chr22 14517862 261 + 49476972 TCAAAAGTTT--CTCCATTCATGTTGACTAGCATTTGCCTTAGGTGTCAGAATTAATGGATTTGTGTTAAAAATAAACACCTGAAATCTAATTCCCTAACTACATTATAACACACTTGATTTCAAGTTCTTAGCTTTTATTTAATGCTTCTAATGACTTTAAATTGTAGCAAAATGGGCTTCCCCCAAGAGCACTGCTTTGTTGATCCTGAGTTGGGGTCCTAAGCCAGAAGTTAACTATGCTTTCATATATTCTTGCAAGTA s mm3.chr3 56384963 240 + 160674399 CCAAATAGTTGACGCGGTTCATGTTCAGCAGTATTTA-TGTAGGTGTGAGAATTAAAGGATTTGTTTTAAATGTAAATACCTTCAATCTTATT--TTAGTTCCGCTGAAGCATACTTGATTACAAGTAGTTA------------------TAATGAC-TTAGAATACGACGAAATCATTTTTTCCATGGAGAATGGTTTCATTGATCCTGAATTGGGGTCAT-GTCCAGGGAACAGCTATGCTTCTCTCTATCCCCATAAAca a score=45186.000000 s hg15.chr22 14520102 441 + 49476972 cttggcatagcagatagaaaataattgtgatatgagacaggcctgaattggatttatggctctattgcatatttgttttgtgattttgggaaagtcatttaatctctccgaattttagtttctttagggat---taatagtaccttttccagggagctgttattaggatgagacaa--------------------cgACCAGAACATAGCAAGAATTCATTAGTGCTCTCACCACCCTTCCCCCATTGCAGCCCTCAGTACCTGAATGGCAATCGTGCATCTTCTCATCAGCCTGGAATTGCTTCCCCTTTCATCTTTGGCTCT-GCAGTATTCAGT-GTCACTAGTGAAATGTGTGAAATG----AATGAATCGACAACTG-ATGCTTAATACCTAATGAGACAAGTGAATGAATCCTTTTGTTCATTTTATGGCCAGAAAGATAGTGTAATTAAGTAATAACAACTGG s mm3.chr3 56385792 415 + 160674399 CTTGGTAAAGTCTGGAGAAGGTGACTGTAATGCAGGACAAACCTGATTTGTCTTCCTGGCTCTATTGCATATCAG-TCTGTGATTTGAAGAAAATC----AATCACTCTAAAT----GTTTCTCCAGAAAT---TACCAGCACCACTTTCAATGAATTGTTGTCATAATGAACTGAGTTCGTTTCATCTGCCTGGGTATCTAGGGCATAACAAGAAATTGTGACCCTTCTCTCCA-TCTGCTTCCACTGAAATCCTGGACACTTGAGAGACA------CCTACTCTC-----------AATGCTCC---------CGTTGGCCCTGGAAGTGCTTGGTAGGCACTAGGGATGCCTGTGAAGTG----AGTGAGTC----ACTGAATGCTTAACATCTAAGGACATAACTGAAACAATCTTTTT-TCCATTTTATATCCAGAAGG--------AATAAAAAATAGCAGTTGg s rn2.chr2 140740851 422 + 246339213 CTTGGTAAAGTCCAGAGACAGTGACTATAGTGCAGTCCAAGCCTGCTCTGTCTtcctggctctattgcatatcgg-tttgtgatttgaagaaaatc----aatcgctctcaatgttggtttctcctgagattaataatagcacctctttcaatgagttgttatcacaatggaatgagttcatTTCATCTGCCTGGTTATCTAGAAC---ACAAGAAATTGTGACCCTTCTCCCCA-CCTGCTTCCATTGCAGCCCTGGATACTT--GAGACA------CCTACTCTC-----------AATGCTCA---------TGTTGGCCCTGGCAGTGCCTGATAGACACTAGGGACACCTGTGAAGTGAATAAGTGAGTC----ACTGAATGCTTAACACCTAAGGGCACAGCTGAAACTATCTTTCTGTCTGTTTTATATTCACAAAA--------AATAAAAAATAGCAGCTGg a score=28987.000000 s hg15.chr22 14521579 258 + 49476972 CCCTTTTTTCTGTCTTCCTGG---CTCTCTAGTCCTAGGAAGTTAAAAAGAGTCAGAAAATCCCATCTTTTCTTCTATGAAGTTTGGGAGAAAAGTCAAGATAGGCT----ATAAAGTGTTGCACGTGATAATCCAAGCATCCTTCTACTGATAGTAGAGTCTCATTATCCTTCCTCAGATATATGCAGTGATGAAAATAGATAATGAGAATGCATGCATCCAAGTAACTCTTTGAGTGTATAAGGGCTGATTAAGTTGAAAGAA s mm3.chr3 56386495 240 + 160674399 CCCCTTATTCTTTATTCCCTG---CTCTCTAGTCAT-GGAAGTTGCAATGA-TAAGAGAGTCCCATCTTCGCTTCTCTGACGTCTGGG------GCCAAGACAGATTGATTATGAAGTGCTGAAC------------GCTTCACTGT--TGGTAGTAGAGTCCTACTCTCCTTTCTAAGATATCAGAACTGACAAAAGCTGAAGATGGGAAAATGCACAGTCAAGAGACTTTGGAGGAACACAAGGAGTCATTAAACTGAAAGAA s rn2.chr2 140742798 246 + 246339213 CTCCTTATTGCATATTCCCTGTGGCTCTCTAGTCAT-GGAAGCTGCAATGA-TAAGAGAGGCCCAGCTTCACTTCTCTGACATCTGGG------GCCAAGGCAGATT----ACGAAGTGTTGAACTTGATAGTGTCTGCGTCTCT----TGATAGCAGAGTCCTAGTCTCCTTTCTCAGACGT---AACTGACAAAAACTGAAGACAGGAAAATGTGCACTCAAGAGACTCTCGAAGAACACAAGGAGTCATTAAACTGAAGGAA a score=14616.000000 s hg15.chr22 14522127 100 + 49476972 TTGCAAAGTATCTACTAATCTAAAAAATGCACAGCCTCAGTTCTCAAAGAGTTTATGTTGTAGGATCACGTCAGTTCCATATATAATTTGTTTATCACAA s mm3.chr3 56386735 96 + 160674399 CTGCACATTGTCTACTGAAAC-AAAAATGCA-AATCTCACTTCT--AAGTGTTTATATACTAGCATTATGCTAATTTCATATATAGTTTCTTTTTCATGA s rn2.chr2 140743044 96 + 246339213 GTGCACATTGTCTACTGGAAC-GAAAATGCA-AATCTCACTTCT--AAGTGTTTATGTGCTAGCATTATGCCAGTTTCATATATAATTTCTTTTTCATGA a score=129519.000000 s hg15.chr22 14522442 1561 + 49476972 aacAA-GTATTTTAAAAGATCAAAATAAGGGTAAGAGAATATGGATATTTAGGCTTATGGTTACTTACATGGAACAGTTGAGGCCATTAAAAAATGTCTAAGACATAGGCAGTGGAAGGCTGAATTCAAGAAAAAG------TCTCAGAGCTGAGGAAACAAAGAACCT--ATGAGGTTAAGGTGTTAAATGAGCCAACCACATGAGTGTGAAAGGGAGGCCAAATGAGAAAATGATGTTGCTTGGGTGTAGAGGAAGTTCTGGAATAAATGTGGCAGTTGTTAGAAGACATTATAGTTAGAAGACATTATAGTTAGATGGATAGACAGTAAAGAAGGGGCTTTTGTATTAAAATAGAGGAATAGTGGTTGGGAATAGGAAATATGGAGCTAAAATTATGCCAACCCACTTCTATTAAATAAATTCTATGACACCTTAGCCTTTGGGAAAATGACTAGCCTTCAGTGGAGCACATGTCAAGGGAAGCATTGTCCCCATATAGATAGCTGAATTT--TAATTAAAGCAAAGAAATGGAGTCAATGTCCTCTAATGAGGTTTCCAGAAGTCACATTGA-AAATATTTGGGAGGGAGGGAAGATTGATTCAGAAGTAAAACACAGAGCAGTATGGAGATATGACACTGGAGAGCATAAATGAGT----CGAGTTTTCAAAAAAATAGAACAAAATT-TTTTGAAGTCAGTTGCCTATTAGCTTCCCTCACAGTTCTTAGGGAGATATAACTGAAGG-CCTCCAAAGAATTTGTGTC---TGTCC---------------------------------------ATAAGGTACAGAATAAATTTATTTCAAAGATCTCCTCCTCCCAGAGTTGATTATTTGACTTAGGGCAAAAGACTGAATGTAAATAGTAGCGAAACTGTCTCTGATATTATTGTAAGGAATAAAATAATTTTGCTTTGTAAATAAAATAGAATATTTTCTAGAGAGAACTGACCCAAACTCAATTTTAG-GACTGGTCCTGAAATTCAGAAATGCCTTTCCCATATTGCCTAACTGTGCCTTTTTCACTGGAAAGAAAGTGCTGCCTTCAGGGAGCACGCCTCCGCAGAGATCAGTAAAATCAATGAGAAATGCAATGTCCATTTGTCAGTAAAGACATCTGAAGTTTGATGGGTTTCTTGGGA-CTGGATAACTAGTTAAAGATTCTAAAGAAAAATTAAGTGGGGCATAGAAACCAAAAATCTCAAGAGATCTTTGAAGAAAGAAACATGAAAAATGAGGACAAATTTAGAGAAATGTTGCTGGCATAGATGTTAACTTCCAGAAGAAGATGGAAATAGACTACCATGCAAAACAAAAA------GACAGAAGAGAATATTAGCACTCTGTTGCAAAGGAgaataggtatgctctactggtaagtataatgcaaatattccaatatctgaaaaaaatcccaaatccaaaatacttctggttccctg----cattttggacaagggatactcaacAGGTATTTTAAAAGATCAAAATACAGATCACAGAATATGGATATTGAAGAATATGAGCAAACGAGAGTAAGAAAAAATGTTGGAGGACTTTTAAAAATGTATAAAGGAATTAATGAAT s mm3.chr3 56390061 1324 + 160674399 AATAA-ATAATTT-GAGGATCAACATAAACATCC-------TAGGTA--AGAGTTTATGATTTATGATATGGAGTA-TTGAGGCCA------------TAAAATATAGACAAAAAGTGATCAAATCTAAGGAAAAGCGCAGGTCTCTCGGATGAATAAATCAAGAACCCCCATGAAGTTGAG-CTTCAGAAGAGCCAAAT----------------------------GAAAATAATGGTCCTTGGCTGGAGAGGATATTCTGGCATA--------------------------------------ACTCTAGCCAGATCCTTATAGAT-------GAAGCTCTTAT-----CATTGAGGAGCACTGAACTGAAATAGGTAAGACTGAGCTAAAGATACGTTAACACACTTCTAC-------ATCCTATAACATTCCAG--TTTTGGGAGATGACCAAAT-------GAATGCTTTTCAAGGGAAGCCACAT-GCCATAGAAAATGATTGATTATTTAATTAAAGCAGATGAATGGAGCAAATGTCCTAAAATAAAGTTTCTAGAAGTTTCAGTGG-AAATATTTCTGACGGAAAGAAATCTGGTT----GACAAAGCACAAGGTAATA--------------CAGGTAGGATAAATGACC----TGAA-TTTAATGCAAACAAAATAAAATTACTTTGAAGTTAGTTGTGTA-TGGTTTATCTCATTGTTCTTAAGGAGATGTAACTAAAGGTCCTCCAAGGAA---GTATTTATAGTCCCAACCCCACAAAAATTCTAGTTT---CTTATTTTTCCCTCCAGAGTATATAGTA----CACTGTCAGTGTTCCCATTTCTTGGAGTTAATTACTTGGTGGAATGTAGAA-------------TAATAGCAAAACTGCCTTTGATATTATCAGAAGGAATAAAATAAGTTCCCTTTGTTAGTAAAAT-----------CATAGAGAATTTATT----GTCAGATTTTT-AGTTAACCTCACAGTTCAGAAACACCTTTCGCATATAACTTAGCTGTGCCTTTTCCCATTAGAATCAAGTGCTGCCTTCAAGAAGTGTGCCCGTCAAGGGATCTCTAAAACCAACGAGAAATCCAATGCCAATTTCTAGAGACAGACATGAGAAGTGGGATAGGCCTCTAGGGGGTTAGATCACTTCTAAAAAA--CTACACCAAAATTAAATGGCACATAGATGGCCCAAATCCCAAGAGATCTTTGAAGAATACAGCATAAAAGATGGAGACCAATTTAGAGAA---TTTTTGGCATGGATCTCAACTTCCAGAGGAGTATAGAACTAAGATATTATAGAAAGAAAAAA----CCGACACTAAAGGAATTTGGCACGGTCTTGAAAGAGAGACTGA------------------------AAAAATATTTAAG-----GATGTAACTCTCAAA-------------TGAATTAATG----CAGTTTGAAGAA-GTCTATCC--------TTTT------------------------ACtattaatttttaa-----------------atta---aaaaat----------tatta--tatatataatatatttGt----- s rn2.chr2 140745593 1327 + 246339213 AATGATATAACTT-GAGGATCAACACAAGCATAG-------TGGGTA--TGAGCTTATGATTTATGATATGGAGCA-CTGAGTTCA------------TGAAATATAAACAAAAAGAGATCAAATCTAAGAAAAAGTGCACCTCTCAC-------TTTCTCAAGAACCCC-ATGAAGTTGAGGCTTCAGAAGAGCCAAAT----------------------------AAGAATGATAGGCCTTGGCTAGAGAGGATAATCTGGCATG--------------------------------------ACTGTAGCCAGATCCTTACAGAG---AGAGGGAGCTTCTAT-----AGAAGAAGAGCATTGGATAGAAATAGGTAAGACTGAGCTAAAGATAAACTAACACACGTCTAC-------ATCATATGACATTCCAG--TTTTGGGAAAGGACAAACT-------GAATGCTTTTTAAGGGAAGCCAAAT-GCCATAGAAAAGGATTGATTA--------AAGCACATGAATGGAACATATGTCCTAAAATGAAGTTTCTAGACGTTTCAGTGGTAAATATTTCTGAGGGAAAGAAATCTGGTT----AACAAAGCCCAGAGGAGTA--------------TAGATAGGATAAACGACCCTCATGAG-TCTCATGCAAACAAAATA-------------GTGAGTTGTGCA-TGGTTTATCTCATTGACCTTAAGGGGATGTAACTAAAGGTCCTCCAAAGAA---GTATT---AGACCCAACTCCACGAAAATTCTAGTTTTTTCTTTTTTTTCCCTCCAGAGTATATAGTAAGTTCACTTTTAGTATTCCCATTTTCTGAAATA---TATTTGATAGAATGTAGAAGCTTGGATATAAATAATAGGAAAACTGTCTTTGATATTATCCTAAGGAAGAAACTAAATTCTCTTTGTTAGTAAAAT-----------CAAAGAGAACTTATT----GTCAGTTTTTTTAGTTAGCCTCACAGTTCAGAAACACCTTTCCCATACCACTTAGCTGTGCCTTTTCCCATTAGAATCAAGTGCTGCCTTCAAGAAGCACACCTGTCAAGGGAGCTCTAAAACCAATGAGAAATCCAATGCCAATTTCTGGAGACAGACATGTGATGTGAGATGGGCCTCTAGGGGTTTAGACCACTTCTAAAGGA--CTACAGCAAAATTAAATGGCACATAGATGACCCAAATCCCAAGAGATCTTTGAAGAATACAACATAAAAGATGGAGACCAACTTAGAGAA----TTTTGGCATGGATCTCAACTTTCAGAGGAATATAGAACTGGAATATTATATAAAGAAAAAAAAATCTGTCACTAAAGGAAATTAGCACTGTCCTGAA----AAACTG-------------------------AAAAATATTTAGG-----GACATAACTCTCAAA-------------TGAATTAATGAATACAATTTGAAGAA-GTCTATTC--------CTTT------------------------ACtattaatttttaa-----------------attatttaaaaat----------tttta-ttatatataaaatatttaa----- a score=25484.000000 s hg15.chr22 14524003 232 + 49476972 GCAATTAGTA--TTATT--TTTTAA---ATCAGTCATTAATAGCCACTCGCCATGATTGCCAACCCCTTTGATGAGTACTAATTTCAAA------ATTATTAAGGAAAGGCAAATATTTAGATTCATACAGGTTAAAAGAAAATATTTTCAAAATTTCAAATTTAAGCTTATAAATGTTCTAAT-----CTACTTTTGAATGTGTATTCGTGACCCAAGATTGGTTTTTTCCAGGCCCCATCATTCTAAT s mm3.chr3 56391537 234 + 160674399 CCTTTCACTA--TTAAT--TTTTAAAACATTAGTCTTTAATAGCTA-TTGCTATGCTTGCCAA-AATTTTGATGAGTACTAATTTCAAATATATTATTATTAAAGAATGTTAACTAGTTACACTTATGTCTATCAGGAGAAAATATTTTCAAATTTT-CAATTTAAGGTCATA-------TAATATAATCTGTTTT-GAATATATACCAATAA-CCCAGGTTGATTTTTCCAGAATAGTACCAATTTAAT s rn2.chr2 140747447 235 + 246339213 cctttctctgatCTAATAATTTTAAAACATCAATCTTTAAGAACTA-TTGCTATGCTTGTCGA-AATTTTGATGAACACTAATTTCAAATGTATTATTATTAAAGAA-ATTAACTAGTTACAATTAGGTCTATCAGGAAAAAATATTTTCAATTTTTTCAACATAAGGTTATA-------TAAT-----CTGTTTTTGAATATATACCAATAATCCCAGGTTGATTTTTCCAGGATAGTGCAAATTTAAT a score=13941.000000 s hg15.chr22 14527820 77 + 49476972 AAAAATAATAAGCAATCTGAGATTATTTTTGTGCATTATTTTGTTCTTAGGCTATATTTCATCATGAATATACAGTC s mm3.chrX 55987468 77 + 149996094 AAAGATAATATGCAATCTAAGATTACTTTTCTGTTTCTCTGTATTCAATGTGTATATTTCTCCAGGGATATACAGTC s rn2.chr1 17261659 77 - 276301343 AAAGATAATATGCAATCTAAGATTACTTTTCTGTCTTTCTGTATTCAATGTGTATATTTCCCCAGGGATATACAGTC a score=15564.000000 s hg15.chr22 14528105 194 + 49476972 GTTTCCCTAATATGGTATTATAAAACTGTTTAAACATATAAAAATGTTG-------TGGGAAGTGCATATTT-ATAGTCCAACCACTTAGATTGTACAATTATCATTTTGTTATATTTGCTTTACTACATATCTATCACTCTATCCACCATTCTATCCAATTATC----AACTCACCGTTTCTTATTTATGTCAAAGTATATATTT s mm3.chr4 126775690 191 + 152921959 GTCTCCCTGA-ATTTCCCTATGGAAATGTTCAGATATATCAGAAAGCCGGTAGACTTGGGCTGTGGATATTAGACACATC--CTATCTAAAGTCTACACTTAACATCTTACCAGATTAGCCTCACCACATAACTATCAAAGTAACCATCCTTCTGTCCATTCATCAACAAA--CACCCTCTTTT----------AAGAACATATTT s rn2.chr5 28063053 180 + 191625135 GTTTCCCCCA-A-TTCCCTATGAAAATGTGCAGGTGTATCAGAAAGTCGATAGGCTTATGCAGCAGATATTA-ATATATC--CTATCTAAAGTCTAGAGCTAGCATCTTACCAGATTAG-CTCCCCTCATAACCATCA----AATCATCCATCTGTCCATTCATC----AA--CACCCTCTCTT----------AAGAACATATTT a score=11889.000000 s hg15.chr22 14530878 85 + 49476972 TCTCTGGTCTT--CTCATTCTAAGGACATAACAGGTTCTCTTTTTCTCTGGAGATGAAATCTAGATCTTTGATTTTGGAACCAAATT s mm3.chr9 80408696 87 - 124467299 TCTATGGCCTTGGCTTGGTTTAAAGCCTTCATACATTCTGGTTTTCTCTGGAGTAAGCCTTAAGCTCTTTGATTTTGAAGCCATATT s rn2.chr8 82489110 87 - 127756414 TCTACGGCCTTGGCTTGGTTTAAAGCCTTCATACATTCTGCTTTTCTCCAGATTAAGCCCCAACATCTTTGATTTTGAAGCCATATT a score=15809.000000 s hg15.chr22 14530963 121 + 49476972 TGGACTCTTGACTCTGAAGCACCAATTTCTTCAGCAAGTTGTTCTCTGGAATCAATCCCAGGGTATGGGTTTTTCATAAATGCATGGATGACTGTGTGTAATTGAAAGGTGCTATAGGTGG s mm3.chrUn_random 21423098 121 + 117911829 TGAATCCTGGATTCTGGGATGCCTGTTTGTTGAGCCAGTTTTTCCCTGGTAACAATCCCAGGGAACCGATTCTTCTCAAAAGCTTCAATTAGAATATCAGTCTGGAACTTTGTGAAGTGCG s rn2.chr16 82672654 121 - 84226546 TGAATTCTGGATTCTGGGATGCCTGTTTCTTGAGCCAGTTTTTCCCTGGTAACGATCCCTGGGAATCGATTCTTCTCAAAAGCTTCGATTAGAATATCAATCTGAAACTTTGTGAAATGCG a score=19036.000000 s hg15.chr22 14531084 151 + 49476972 -TACAACACCATCTGGCTTCTCTATTTTGAAACTCCACACCAGGTTAATCTT-GTCCATGGCTGTGGCTTAAATCTAAAGTC-----AGGTTCTGGTGTTTTCTGGAATCCATGCCTAGCTCTTTGATTCTGAAACCAAATCTGGATTCTGGACTCTT s mm3.chr9 80408662 137 - 124467299 -TATGACATCATCTGATTTCTCTATCTTG------------------ATTTT-GTCTATGGCCTTGGCTT-GGTTTAAAGCCTTCATACATTCTGGTTTTCTCTGGAGTAAGCCTTAAGCTCTTTGATTTTGAAGCCATATTTAGCTTTTAGACTCTT s rn2.chr8 82489074 138 - 127756414 CTATGACATCATCTGACTTCTCCATCTTG------------------ATTTTTGTCTACGGCCTTGGCTT-GGTTTAAAGCCTTCATACATTCTGCTTTTCTCCAGATTAAGCCCCAACATCTTTGATTTTGAAGCCATATTTGGCTTTTAGACTCT- a score=20853.000000 s hg15.chr22 14531235 181 + 49476972 CTGCATTGATTGCTAAAGCAAGTTTTTGTTTGGTAGCATAACCTGGGTAAGGTTTTTGAGTGAAGGTATTGATGAGGATTTTCAATTGATCTTCTGTGAATTTGGTGCAATTGCACCTATGATTTGTTGCTACCATCTTGTGTGAAGAGGGGTC----TTCAACTATGCAGAAAGAGAGTTCTGG s mm3.chr9 80408969 172 - 124467299 CTGTGTTGCTTTCTAAACCAAGTTTCTGTTTGAAAGCAAAGCTGGGTTAAGGTTTTTGGTTGACTGT-CAAA-ACCAGTTTTCAGTGGCTCCTC--TGAATTGGGTACAGCTGTTCCTG---------GCTGTCATATGGTCAGAAGCATTGTCCAATCCCAGGGAGGTGGGGAGAGAATCCTGG s rn2.chr8 82489382 173 - 127756414 CTGAGTTGCTTTCTAAAACAAGTTTCTGTTTGAAAGGAGAGCTGGGTTAAGTGTTTTGGTTGGCTGT-CAAATACCAATTTTCCATGGATCCTC--TGAATTGGGTACAGCTGTTCCTG---------GCTGTCCTGTGGTCAGAAGCATTGTCCAGTCCCAGGGAGGTGGGGAGAGAATCCTGG a score=46425.000000 s hg15.chr22 14532136 649 + 49476972 AGATTCTACTCATCCCACACCAAAATGTAAACAGATATATTATTTTCTATACTCCCAGGATAATTTTGGTTTTA-CTTAAGCATCACTATCGCCCTCAAATGTCAAGTGGAAAAATAAATGTGAATAATCCCACCACTAGCCTCCAGACTTGATGTTCATGCTATTTCGTTTTTAAAATGACCTTTTAAAAGTTATAAATTAGAAA-CGTGGAAGTAGAATGGCTTCATGCAAGA------AATACTGGAATAAGATCC--------CTGTTCTGGTCCCAGAGTcttagacaagtcattcagcctttctaagcatcagttctccc-ttcaggaaaacatgggcattcatctctacgggagctgctagctctaactgtcagtgagtttctgaAACTTGCCCAGGAAGGAGCAGCCCCAGTGTGAGTGCATGCCA-CCCCTGTGCTTGCCTTTTGCCTGCT-TCTTATCCTTGAGGTAGCCTGCAGGCTTCTCCTCATTCATCTCCTAAGCCAGTGCTATCTGACGGCACAGAATATGTTTCCAATTCTGGTCTCATCTGAAATACATTTT------TCGTGGAAGAAA-GATTACATCTATGACCTGCAAAGCATTATGCTCCTCTCTGTATTCCGGATCTTGTGTTATTTT--TTTAATATGGGAAAATTTATGAt s mm3.chr6 66394361 587 + 149950539 AGATCCCAGTTATTCTACATC--AATCTATACAGCAGCATCACTTT---TATGTCAAAGACATTTTCAGTTTAT--TTAGTCAT------------------TTATTTGGATAAATTAATGTGAATATTCTGATTGTCTGCCTCCTGACTTTATTTCAGTTCTATTTTGTTTTTA------------AGAGATAATAAATGAAAAA-GTTGGAGGTAGGCTGGTTTTATTAAAAACAAAGCAACATTGAAACAAGACCCAGACATATGTTCTCTGTCCCTCGAG-CTTAGACTGGGGGCAGAGC-----------TCAGAGGTCTCATTCTGGGAAATATGGATAACAACCCCTGGGTGTGCGG--AACTCTAGTCGTGCATGGATTGCTGAAGTGCACCCAGGAATGGATAG-CC---TATGAACACATGCCAGGTTCCAGGCTTGCCTTTTGCAGGCTCACTTAACTCTTGGTTGTCCTAAAGGCAACTTTTCCGTTGG-----AAGCCAGTGTTACCTAACAAAAGGGA--AGGATTTCAGTGCTAGTCATATCTGAAAGAAATTCT------TCTCAGCAAAAATGATTATGTCTGTATTCTGCAAA---------------CTATATTTC------TGTGTTTTTTAAAATTTATGTGTGAAAAATTAAGAT s rn2.chr4 90992127 566 - 183307734 AGAACCCGGTTATTCCATGCC--AATATAAACAGCTGTATTACTTT---TATGTCAAGCATATTTTTCATTTTTCCTTAGCCAT------------------TTGTTTGGGTAAATTAATG-GAATATTCTGATTGTCTGCCTCCTGACTTTATTTCAATGCTATTAT-TTTTAA------------AGAGATCATAAATGAAAGATGTGGGAGGTAGGATGGTTTCATTAAAAACAAAACAGCATGATAACAAGACCCAGAAACCGCTTCACTATCCCTAGAG-CTTAAACTGGGGGAGGAGC-----------TCAGAGTTCTCATTCTGGACAATGTGAATAACACCCCCTGACCATGCAG--AACT------------------CTGAAGTGTACCAAGGAATGTCTAACCC---TATGAACACATGCCAGTTTCCAGGTTTGCCTTTTGCAGGGTGTTCTATTTCTTAGTTTTCCT-AAGGCAACTTTTCTGTTGGA----AAGCCAATGTTACCTAACAGAAGGGA--AGGATTTTAGTGTTAGTCATACCTGAAAAAGATTCTCCCCCCCCCCAAAAAAAA-----------GTATCCTGCAAA---------------CTATATTTC------TGTGTTTTTTTAAATTTATGTGTGAAAATTTAAGAT a score=60702.000000 s hg15.chr22 14533082 727 + 49476972 TTATGTCTTTTTATATGA-GAAAAATTTATTGAGATCATAAGGAAAAAAAAATCCCTGAGCCAAAAAATGTCAACCAAGAAGAAAAAGAAAGTGAGAAGTAAGAAAAATATGTATTTTAGAGAAAGTGAAGTGGGCATAGCAATCACATTGAAATCTGGGTATAGAACAACCTTCATCTCTAAAATTTATATTTAGT-----------------------------CAACCACTATGCTAAGCAAGGTTGTG-GTAGGAATACCTGCCACCTATTTTAGGCCACATGTCTCTTAC------GGGCAAAAAGTAAAGCAAAGCCATAATTGT-GG-------TTCGATATTTTGGATGTATTAATTCTCATTTCAGCATT--TGCATAGTCTCACATTTTGGAAAACAAAATTGTGGTGATTTCACTTGTCTCTCCATATCATGATTATATTCAAAACTAGGAAACAAACGTAGACTAAAGAAGC--AAATACTAAAGAGTGAGATCATGCAGGTTAAACAGATACTCTTTCTCAGGGAAA----AGTCATTTACCCATCATGAGCTGAT--ATACTGTTGTGAGTTTATATGGTTTAGTGTATTTACAACTTAACTAAGTATACATGATTCACTGTGTACTGTAGAATATAATTAAATTGACATTTGCTGGTACGGAATAAATTTGCACATCAGTGAAATAAATGATGAAAATAAATAAAGTCTGAGGCCAGATAATTCCATTGGTTACCAATTTATGTCTTCA--GCTCTACACCAAAGCAAA s mm3.chr6 66394948 707 + 149950539 TTA-TTGTTTTGACATGA--AAAAATCCCTTGAGTTCATAAGGAGAAAGAAGT---AGATCCATAAA--GTCAGCC---------AAATAAGTGAG--------AAAATATACATT-------AAAAAAAATCGACAGAGAAATCCCTATAAAATCTGATTGCAACA-AACTTTCATCTCTAAAATTTTTGTTTAGCATGTATCTTTATGTTTTTATTTATGTTTATGACTGCTTGTCTCAGCAAGAAAGTA-AAAAAAGTGCAAAGC-TCTGATCAGAGTCTCAAGCCCCTAATTACAATTGGTGCAAAGCAGAGTGGAGCTGGCATTGT-GGGAGAGCCTTTAATGCTTAGGA-----------GCCTTTCAGAATTTATGTATAGTCTCACTTCTTAGGAAATAGGA-TGTTGGGATTTTA-TTTCTTCTCCCTTTCATGATTATATTCAAAATTATAGAAGCTTTG-----TAAAGAAACTAACATACTAAAAGGGCAGATCACATAATTTAAACAAATATACTTTCTCAGAAAGAAATGAGTAACTTTTTAATCATGTTCTGACTAATACTTCCA-AAGCCTTTATGGTTTTAGCTATTTGCCAATT---------CAAATGGCTCACTGTGCACTGCAGACAACACATGCATTGGTATTTACTTACTAAGGGGAACCTTGCTTCTGAGTAAAGTAAATGGTAGAAACTAATGAAGTCTGTGTCCACGTGATCTC-------------TTATGTGCTCATGACTCAACATTAAAGCAAA s rn2.chr4 90992693 687 - 183307734 TTA-GTGTTGGGATATGAGGAAAAATCCC-TGAGTTCATAAGGAGAAAAAGTT---GGATCCATAAA--ATCAGTC---------AAGTAAGTGAG--------AAAATACACAT---------AAAAATACCAACAAAGAAATTCCTATAAAATCTGATTGCAACA-AACCTTCATCTCTAAGATTTATGTTTACCATGTATCTCTGTGTTTATAATTATGTTTATGACTGCTTGTCTAAGCAAAAAAAAGCGAAGAAACGCAAATC-TCTGATCAAAGTCTCAAGCCCCTAATTACGAGGGGATTACA---------AGCCAGGATTGTGGGGAGAAGTTTTAATGCTCAGGA-----------GCCTGAAAGGGTTTGTGTACAATATCACATCTTAGGAAATAAAA-GGTTGGGA--------TCTTCTCTGTTTCATGATTATATTCAAACTTGTGGAAGATTTG-----TAAAGCAGCTAACAAACTAAAGGGACAGCTCACATAATTTAAGCAAATACACTTTCTCAGAAAGAAATGAGTACCTTTCTTATCATGTTCTCACTCATAATCCCA-AAACCTTTATGGTCTTAGCTATTTACCAGTT---------TGAATGGCTCACTGTGTGCTGCAGACAATACTTGCACTGATATTTACTTACTAGGGGGAAACTTGCTTCTGAATGAAATACATGGTAGAAATGAATGAAGTCTGTGTCCATGGGATCTC-------------CTACGTGCTCATGACTGAACACT-----AAC a score=5609.000000 s hg15.chr22 14533889 98 + 49476972 TCATTTTGTACAACCAGAAATGGAAAAGGAGTCAGTCAAGGTGGGGCAGAAGTTTCTAACAAAGTCTAAAGCATAGTTTTATATAACTAATAATAAGG s mm3.chr11 64577830 70 + 122862689 TTATTTTGTACAACAGAAATTGAAAGGGGACC-----------TGAAAGAAGTTCCCACTA-----------------CTGTGGAGCAAATGACAATC s rn2.chr10 46723392 74 + 106208427 ----TTTGTACAGCTGAAATTGAAAGGGGACCTGATCC---TGTGAAAGAAGTTCCCACTA-----------------CTGTGGGGCAAATGGCAATC a score=2221.000000 s hg15.chr22 14533987 318 + 49476972 ACACAATGTTTAGCTTACTTAATTCCCAAACTGAGGTCACTAAAACTTAAGAATATCTACCAAAACTTAAGCAAAATCTCAGAGAGAAAC----TTTAAAAATAACATTTTATTTTTGATCATTCAAAATGTTTCAATCAATATTCTGAGCCTAAACGTGTAGGTGAGTGCTTTCTCCATCTTTGCACATGTGAAGTGCGCCTGAAC-CATAGCCCCACATTTTCTCAAACACCATCACACTCATAGAACAGAAAGGAAAGGGCAGTTTCACCAGCTAGCCCCCATAAACCACTCCCTAGGGTCCTCCCCAGCACCTGCTAAA s mm3.chr11 64577900 236 + 122862689 ATATAAAGTCTGACTAACTTAACTCCTAAACTCTGGTCATCAAATTCTTGGAA-ATTTACAAAAACTTGAGCTGGATC--AAGAAGAAATCCTTTTTAAAAACATCAATGTCTCTCTG-----TCA----GTTTAAATCTTTATACCAGGCC---------GGCTGGTGGCTTGCTCCA-----AGGCCTGTAAATT---TCTGGTCTCCTAACCCCA-ATCCTCTCAGACACCA-------------------------------------CAGC-----CCCATGAGCC---------------CCTTAGACATCACTAAG a score=43466.000000 s hg15.chr22 14534305 551 + 49476972 TTTGGGAGGCCTGATTCCAGGGGGCTGGATAATGAGCTGGCAAAATAAACCCAGAAGAATCGTAATTGCAGACAAAGATAAACTCAGGTTCCAGCACAGATAGACAGCCCATACCAGTGCTTTTGATATTAGCTGCAGTTAA-GCGGGCAGGAA--------AGGCTCCCACTCTATGGCCGGTGGTG------TGGTCAGCTCAGCGCCGCCACCTCGGCAGGCT----------------------------CCATCCCACCATCACCCTCCCAATCA----GGCTGATAGTGTCTCCTTATGCCAAGTGGAAGGAACTGCAATCAAATTCTGACACGACCTGCAAATCCTCCAGGGCCCTGGGCTACTGGTTAGGCCAGTAGGGCTGTGTATCAACCGATTAAACCAATTAATAACTGGC---AGCACAG-CACGGCCTCC-TTCT-CAACAAATTACGATGCTGATCCCCAGACTCGGCCATCCATGCC-CATGGTCTATTGTTCTTAC------GCTTTCAAAACGCCTCCCCTGCTTCATGCTTTCTAGTCTTGAGGACTTGGCTTAAATATGCTTCTGAATTGCCACTCC-CTCTTGTTGACAAt s mm3.chr11 64578136 534 + 122862689 TTTGGAAAG--TGATCAGAGAACCCTGGAT-ATGAACTGG-AAAGTCAGCTCAGAACTCTG---------------GACAAACTGGGCCTCAAACAGA---------CTGGAACTAGCTC-----ATATTAGCTTCGATTTT-GCAAACTTGGG--------------------------TGGTGGAGGCAGCAGGGTCGGCTCCAAGTTGCCACCAAAGCAGGCTCTGACCTCCCAGGATTCTGCCACACACCCTAccccacccccacccccacccccacGTTGGCTGATGGTGCATTGGTAGG--GAGCTGTAAGGACTG----CAAATTCCCTGGCATCCAGGAAAATCCACGAGGCTCTGGGCCCCTG---------GCAGGTCTGTGTATTAACCCATTAAACTCATTAACAACTCGCTCAGACACAGCCACGACCCTCATTCTACAACCGATTGC-CCGCTGACCCCAGAACTCAACCATCCATTCCACACACCCTCCCATTTTGTCTCAAAGGCCTTAAAAGCGCCTCGCCTTGCTCACAC--TTCGGCTTTGAGGACTTGTTTTAACCAAGATTGTGCCTTGCAACAACATTCTAGTTAATCAT s rn2.chr10 46723853 506 + 106208427 TTTGGGAGG--TGACTGGAGAACCCTGGAT-ATGAAGTGG-AAAGTTAGCTCAGAACTCTC---------------TACAAACTGGGCCTCAAGCAGA---------CTGGAACTAGCTC-----GCATTAGCTTTGATTTTTGCAAACTTGGGCGCTGTAATGACTCCCGATGTCTGGGTGGTGGCAGCGGCAGGGTCAGCTCCAAGTTGCCACC-------------------CAGGAGTCTGGG-------CTAGCC---------------------GTTGGCTGATGGTGCTTTGGTAG------CTATAAGGGCTG----CAAATTCCCTGGCACCCAGGAAAACCCACCAGGCCCTGGGCCCCTG---------GTAGGTCTGTGTATTAACCCATTAAATTCATTAACAACTCGCTCAGACACAGCCACGACCTTCATTCTACAACCGATTGC-CTGCTGACCCCAGAACTCAACCATCCATCCCACACCCCCTCCCATTTTGTCTCAGAGGCCTTAAAAGC-CCTCGCCTTGCTCACAC--TCCGGTTTTGAGGACTTGTTTTAACTACGACTGTGCCTTGCAACTCC---CTGGTTAATCAT a score=21977.000000 s hg15.chr22 14535150 240 + 49476972 GACAGTTCTTTACACCGTTCTCCAG-------------TTGGGGCGGAGTGGGAGACACCACGGAGCCTACCTCTGCAGGAGGCACAGCTTGGCAGAA---GGGAGACACCAGCCAGAGGAAGGATGCATTTTAGGCACCGAACTTTAGGTAAAGCGCTCTGGGTCAGGGGTCTCCTCCAGAG--TGGTCTGTTTAAAGTTAAAAAGGTCGCCTTCAAAATAGTTGTAAAATCTATACACTTACCCAGACA-------------------------------TACACAt s mm3.chr11 64578670 251 + 122862689 ------TATTTATGCTGTTCTCCAGCGGGTGGCCTATCTCGGGACAGAGAAGGAGGGACCCTACAGGCCTGGTTTGGA----GCACAGCCTTG-AGTGCCCGGTGGACTCCAGCC-GGGAAGGGA---------------------TAGTTGCAGCCCTCTGGGTCAGCGG----CTCCTGAGCCTGTTGGATTTAGACTT-TCAAGGTTGCTTTCAAATAAATCGTGAAGTCCTTACATTGCTCCAGGCACTCCGAACAGTCTAAAATGATTTATAAGCTCTAAATAA s rn2.chr10 46724359 252 + 106208427 ------TATGTTTGCTGTTCTGCAGCGGGCGGCCTATCTCGGGACAGAGCAAGAGGGACCCTGCAGGCCTGGTTTGGA----GCACAGCCCGGGAGAGCCCGGTGGACTCCAGTC-GGGAAGGGA---------------------TAGGTGCAGCTCTCTGGGTCAGCGT----TTCCTAAGCCTGTAGGATTTAGAGTT-CCAGGGTTGCTTTCAAATTAGTCGTGAAGTCCTTACATTGCTTCAGGCACTCGGAATAGTCTAAAATGATTCACAGGTTTTAAATAA a score=235905.000000 s hg15.chr22 14535670 2376 + 49476972 ACC-TATTAATTATTCTTAATT----AAAACATTTAAAG----------GACACAGCATTTGGGGTCAGCACAG------------------------CATTTGCAGTGGCTGCTCC------AGCTTCGGGTCCGCAGGTCACCGCGGGGGCCCGGTGCCTACTGGCCCG-GCCGCCCTGCGGGTTAGCTCATGGGGATTCTCTGGAGAACCCTGAGCCCACCTCCTGCGCCCCGCCCAACCTTGGGTCCCCAGGCCC----AGCCTCCGAGGCCCCGCTCCCAG--CGCTG----CCGCCAGAGCTCCAGGCTGCGCTCCCCCAGGCAAAGGCGCCACCGGCGTGTCCAGCGCAGCCTCCTCCTCCAGGCGGCGCGTGTGAGTCAATGGAAATGACCGTGGCGGGCGGA-GCAGCCACCTAGGACATCGC-------GGAAGCCTCCTGAGGGGACTTCCACGGCTTGTCCCAGGAGCTTCTACAACAGCTGGCATTGAGAGTTCAGTTATAATATTTTCCGCCAGTTTTTCCCAGCCCGGCCCC-CAAGCGTCTGATTTTAAA----------------GTTC---CCGCCTCAGGCTCCGGGGCGCC------------------TACCCTGCAAGGGCGCCAGTTCTCCGACACCTGCTAGGGAATGAATCCCCATCCCAGGAGGAAGGCGTGGCGGGGACG---------GAAGAAACAACCACAC--------GATCTGTGACAGTGACCAAGCTTTAGAGG----CCCCGTGTGCCTGCCAGGCGCCTGAGCCCACACC-----GTCCACGCTTCCCTGCCCCGGCGGGAACCAC-CTGTTCTCCTTGCACCGGCGAGGGCCCGGGGTCACCCCCCGCCGGGC--CGACCCCAG-GCAGCTCCAG-AACCCCCTCCCAATCGCCCCG------TCTTGG----GAGCGCAGGGAGTCTGGCTCTT---------------------------CCCTGCC-----------AATAACGA----AATC-ATCACGGACATTAGGAAAGCG--GGGCGAGGCTGGGAAGGGAGCGGCTTTAATC--CGGGGTCCGCCCCCTTCAATTCTCCAGC--TTAGCGGTCCCGAAAGTGGGGTGGGGACGGGGATTGAGG-CTGAGCTCGC-TTCTTCCTTGTTTTCCG-GGTCTTGCGCCTC--TGAAGCGAACTAGGCC----TGGAGGAGTGCTGGGGGTCGAGGAAA----CAG-GGTTGG--GGTGACCGAGGGACAGGTGGGGCGGGCACCTGGGCCCCGGTCGAGG---CGGATTCCGAGGCGGAGCCGCTGCCTGCCTGCGCCTCGCCTGCTCGGTCCACCCAACAGCTCCGCCCTAGACTCGCAGCTGCGGAAGCGGTGGGCCG-GGTGGTGATTACAACCCTGAGCGCT--GTCCCTTTGGAACCTGACTCCCGACT-----------CCGCTCAGCAACC-----------------------GGGAGGTT---------------------GCGACCTCAAAGCCCTCTGTGCTTCTC-------------CATCGATACCGGG-------------------------CCGCCTCTCTCGC--------------------------CTGCAGCGCACGCCTCCGCCC------------------------CCAGGGGCAGCGCAGCGAG-------GCGGAG----------ACCCTCCT---------------GCATTCCGAGCGTGCGGGGCAGCCCTCAGACTGAG--------------------------------GACCTGCGACTTCGTGGG------ACGCCGGTGTCCGCCACTGCGCCCCTCCAGGGAGCAGAGGCGGCTCTGGAAGTCGGTTTAGGGCGGAGACCGCGACTGGAGGGGCGCAGAACGCTCTTCCCAGCGTCCCGGGCTCCACCGGCACAATTTTAAAACCAGGGGCGA---AATCCGAGTCCTGCCG------CCACGCGGG-----------GGTGGAGCGTGACCGCCTCGCCGCGCGCTGTCTCAGGCTCCGCCGGCT-----TTAGCGCCGCGAGGCTGCCAGGTGAGTTCCAGGGCTCTGTGGTTCCTAGAGCGCTCCCGGG-----AGTCTCC-----TGGCTG---CAGCGGGAACCG-------------------AGCTGGATGCCCGGACAGCGCCGGGGTCGTTTTTCTGCCCCTGCCC-------CGTGGCCGGAGCCGCAGGCCTGCCGCTACCCCCACCCGGGCCACGCCTTCCTTC-----CTCGCGGCC-GGACCGC-GCCAGAGTCCCGGGCCCTGGC-TGGAAACTCGCAGGCCCCGGGCA--GCCTGGGCCGCAAGTGCGAT-GAAGAAGCGGGGCCCGGC-------GCGCACATGT---GGTTC-CGGGCAGGAGCCCCGG------CCGCCTCGTGCCCTTCTTCTCGCCCACGACGGTGGCCGGCGGCGGCCTCTGCTTCCCGGACCCATGAACAAAGCTGGAGATGCGGCTTTGGA-----GTCGGCCCTGGGACCTGCTTCTTCT-------------------------CTTGGCTTCG-------------------------GGGACCGCAGCCCAGGG--CGTTCCCTCCGGATCGGTGGCCAGGGCTTGCGGGGCGTGTGCGACTCGGGACCCCCAGCCGGGCAGCAGCGGCC-------------------------------------------------------GCCAAGCATGGCAAGGAGCAGCGCCAGCTT-CTCCCCACCGCGTCCCGGGATGGCG--GGCTTCGGGTGGGAGCCGGCCCGGGACATCCAGGTGGGATCAGCCACCGCTCAGGCCTTGTCCCA---------AGCGGACGCGGCCAGAGGCA-GTCTCAGCACCACGCAGG----CCGCGGGCTCAGTGGGCAAAGAGAGGGGCCCCCG s mm3.chr11 64578921 2818 + 122862689 ACAGCATTAACTTTTTTTTCTTTTA-AGAAAATATTCAGTAACTCTGCTGGCACACTGGTCGCTGGTGGGACAGCCAGGGAAGGCCGCGCGGACAGGACACTTGC----GCTACTGCTACTGCAGCT--AGATCACCAGGTCACCGCCGCGA-------------GGCCCGTGCCTCCCTATGGCTT--CCGAAGGAAA--------AGGACCCCGGCCC-----CCCGCGGCCTGTTGGAACCCGGG-----TGGCCCGCATGGCTGCTGGCGGCGCGGTTTCGGGTCGCCGGTCCCCGCCAAGCTCTTCGGCTGTGCTCTCC--------GTCGCCGCCCA-------AGAGAAGCGAGGGCCTCCAG----------------AGCCCCAAGGGCGGTGGCAGGTGGAGGCAGCCACCTCTGCCGCCGCCTCTGTGTGAATCTTCCAGTGGGGATTTCCACCACCTGCCCCAGGTGCCTCTAAAA------CCTTCAAGGGCTCAGCGAC----TCGCCCGCCACTTGCTACCAACCCAGCCCG-AGTGGGTCTGGTTaaaaaaaaaaaaaaaaaaaaGACCCAGGCTGCCTCGGGTTCGGCTCCGCCAGAAATGATTCTAAAGATTAGCCTGCCA----CCAGGTCCTCGGAA------------------CCTTATCCCAGGAGCCCGTTGTGTACAGGACGAGTGGAGGCAAAGAGGTAATGGCATCAACAACACATCGATGGCAACAGCCTACAGATAGCGAAGGCCCCCGTG-----GTAAACTGCTCCTGGCTGCACCCAAGGATTCACCCTTCCAGGCCCAGCCAGAATCCAAGTTATTCCCAGTGCCCGGATGAGACCC--AGG-----ACTCATCGGACGAGAATCCGAGCGTTGCACCCGGAGTCTCCATTC--TTAGCCCGCAGTGTTCTGGGAACTGTGAGAAAGGAGACCGTCACTGCTGGCTTAAACCTCCAGACTTGGGCAACTCTTCC---CAATTTAAAATAATAATAATAGTA-GTAAAGAACAAAGGGGAGGGGGCGAGAGAGGCTGGGAAGGAAGCTGCTTTAATCCTCAGGGTCAGGCCCTTTTATTTGCCACGCCATCCGTGTCCTAGAAAGTATGGTCGAGGCAGAGAGCCGGG-TTCGGTTCGTGTTTCTCCTTGTTTTCGGAAATCCTGATGCTCTTTGAAAGTAATTGGGTC----TGGGGGGAAA---AAAATCGAGGGAGACGCTAA-TGCTGGGTGATGACCTA--------------AAGCGCTGAGGACCCGGCTGGGTTTCCGGAAACTGGGGTGTGACCCCT------------------------------CCAGCAACT-CACACCAAACCAGCAGCCCGGGATGCAGTGGGCAGAGGTCGTGAATGTGACCCGGGAGCCTCGGTCCCTTTAGAACTGGGCTCACAGCCGGAAGCCACGACCCCGAAACAACCCTCATTTCTCAATCAATGGCCCAGGGATATTCTTTGAGGTCGGACATGTACCAGGTCCGCAGAAATACACGTCCTTGTCTTGGCGCTCCCAGCACCGAGACCGGGAAGGCGAAGCGGCTGC--GCCGGCAGCGCCTCGGGCGCCCAGAAGCCTTCAAAGAGGCTGCGCGCTGCAGTGCGCGCCTTTGCCCGACAGGGACCAGCACAGCTCCACGCCCGGCGCGCCGCAGCCAGCAAAGTCGCGCAGCCTCCCGGTTACCCTCCCTAGCACAAGCGCCTCGCAAGCTGAGCGGGTCAGACCCCCTTCGGGTTGCGGCAACAAGAAGAATTGTAACAAAAAGTTA---GACTCAAAACACCCTTGGCTCTGAGCCTTAGCCTGCGCCCCTCTCCCCATCTGGGCAGCAGAAGCGACTCTAGCAGTTGGTGCTCGTTAAAGGCTGTGACC-CAGAGGCGCACAACACTCCTCCCCGCGTCCCTGGCTGC-----------------AAGAGAGACAA---AATCCTAACCACTCCGAGTTATTCGCGTGGGATGCGGCCACAGCCAAAAGGTAACCGGTTCCTCCGGCGCTTTCCCAGTAGCTGCCGGGTGGGTGTCTTTGTGGAGAGATCACCTAAATGGTTCTAGGGCGCAGCATACCAGCCAACGGTGCCAAGCTAAAAGTTTCTGTAGGTGGCTGTCTCAGCCTACTCCGGAGCATCTGATTTCTCCCCAACTGTCCACCAGCAATGTGC---GGTCGCACTTTGGTCCCCGCCCGCCCTAAATTGACGGAAGTTGTACCCCTGCTTCCCTCCCCACCTGACGCGCAACGGCCGGTGGGGGCTCACGGTCGGGATCACGGCCGGCGCAGCGGCCCCTGGAGAGGAAACTCACCGGTACCAGGCAAGACCCTTGTGGTAGCTGCGGTCGAAAAAGTGGGGCTCGGCGCCCACGGCGCGCACGTCGGGGTGCACGCGCAGGAACTCCAGCAATGCCCGCGTGCCGCCCTTCTTCACCCCGATGATGATGGCCTGCGGCAGCTGCTTGCTCCCAGCGCCGCTGAAGAAGCTGGAGATGGGACTGGGGGAGTCCGGCGCCTCTGGACTCTGCTCCTCCTGGCTCCCAGCGCCTACTGTCTTATCCTTGCCTGCAGCCAGCGAATTGGCCGGAGGTGCCCGGAAGGGCATCTTAGGGGATGTCTCATTCGGAGCTGTGACCAGGGCTGGCTGAGCGTGAGTAGCGCGGGACCCCGAGCCCAGGAGCAGCAGGCCGGGAGCGGCGGTACAGGAGCCGGCGCACGAGTACAAAAACATGTACAGCCAGATGCAAAGCATGGCGAAGAGCAGCGCGAGCTTCCTCCTCACcggcggcgggggcggcggcggctgc-ggcAGGAACCGGCCCGGGACATCGAGACAGGACCGGCCGCCGCTCAGGCGCTGCCCCATACGCGGCCCGCGGGCGCGGCCAGGGGCATGGCTCAGCACATGGCAGGAGTCCCGCCGGAACAGAGAGCACCGCGACGGTCCCCTG s rn2.chr10 46724611 2775 + 106208427 ACAGCATTAAATTTTTTTTCTTTAAGAAAAAATATTCAGTAACTCTGCTGGCACACTGATCGCTGGTAGGACAGCCAGGGAAGGCCGCGCGGACCGGACACTTGC----GCTTCTGC------GGCT--AGATGACTAGGTCATGGCTGCGG-------------GGCCTGTGCCTCCCGGTGGCGC--CCGAAGGAAA--------ATGACCCTGGGAC-----CCCGCGGCCTGTTAGAGACCAAG-----AGGCTCGCAAGGCTGCTGGCAGCGCGGCTTCGGCTCGCCGGTCCCCGCTA--CTCTCCGGCAGTGCTCTCC--------GCCGCCGCTGG-------AGAGGAGCGAGGGCCTCCAG----------------AGCCCCAAGGGCGGTGGCAGGTGGAGGCAGCCACCTCTGCCTCCGCCTCCGCGTGAATCTTCCAGTGGGGATTTCCACCACCTGCCCCAGGTGCCTCTAAAA------GCTTCAATGGCTCAGCGAC----TCGCCTGCCACTTGCTACCAACCCAGCCTGGAGTGGGTCTGG-----------------------ACCCAGGCTGCCTCAGATTCGGCTGGGGCAGAAATTATTCTAACGATTAGGCTGCCA----CCCAGTCCTCCGAA------------------CCTTATCCCTGGAGCGGGCTGTGTATGGGACGAGTGGTGGGGAAGAGGTAATAGCATCAACA---CATGGGAGGCAACAGCCTACAGTTAGCGATTGCCCCCATG-----GTAAACTGCTCCTGGCTGCACCCAAGTATTAGCCCTTCCTGGCCCACCCAGAATCCGCATTATTCTCAGTGCCCGGAGGAGAGCACGGGG-----ACGCAGCGGACAGCGATCCGAGCGTAGCACCCA-AGTCTCTATTC--TTAACCCG----------------GAGAGAAGGGAGTCCGTCACTGCTGGCTTAAACCTCAAGACTTGGACAACTTCACCATTTTTTTTAAAAAAAAAA----AGTGCATAAAGGACAAAGGGGAAGGGGCGAGAGAGGCTGGGAAAGGAGCTGCTCTAATCCTCAGGGTCAGGACCTTTTATTTGCCACGCTATCCATGTCCTAAAAGA-------GAAGCAGAGAGCGGGGGTTCGGTTCGTGTTTCTCCTTGTTTTCGGAAGTCTTGACCCTCTTTGAAAGTAATTGGGTCGGGGTGGGGGGAGG-TGGGAATCGAGGGAGACGCCAAGTGCTGGGTGATGACCTA--------------AGGGGCTGGGGACCCGACCTGGTTTCCGGAAACTGGGGTGTGACCCCT------------------------------CTAGCAGCT-CACACCAGACCAGCAGCCCGGGATGCAGTGGGCAGAGGTCGTTAATGTGACCCGGGAGCCTAGGTCCCTTTAGAACTAGACTCACAGCCGGAAGCCACGACCTCGAAGCAACCCTCATTTCTCAATCAATGGTCCAGGGATATTCTTTGAGCTCAGACGGGTACCGGGTCCTCGGAAACACAGGTCCTTGGCGTGGCCCTCCCAGCATAGAGGCCCAGGAAGCGAGGCGGCAGCACGCCGGCATCGCCTCGGGCGCCCAGAAGCCTTCGAAGCCGCTGCGGGCTGCAGTGCGCGCCTTTGCCCGACAGGGACCAGCACAGCTCCACGCCCGGCTCGCCGCCGCCAGCAAAGTCGCGCAGCTTCCCGGCTCCCCTCCTGAGCACAAACGGCTCACCAGCCAAGCGGGTCAGACCCCCTTCGGATTCCCGCAACAAGGAGAATTATAACAAAAAGTTAACAGACTCAAGACCGCCTTGGCGCTGCGCCTTAGCCTGCTCCCCTTTCCCCATCTGGGCAGCAGAAGCGACTCTAGCAGTTGGTGCACGTTGGAGGCTGTGACC-CAGAAGCGCACAACACTCCTCCCCGCGTTCCGGGCTGC-----------------AAGAGAGACAACAAAATCCTAGCCACGCCGAGTTATTCGAGTGGGATGCGGCCACCGCCGGAAGGTAACCCGTTCCTTCGGCGCTTTCCCAGTTGCTGCCGGGTG----TCTTTGTGGCGAGGTCGCCTGAATGGTTCTAGGGCGCAGCGCACCAGCCAGCGGTGCCAAGCTACAAGTTTCTGTAGGTGGCTGTCTCAGCGTACCCCGGAGCATCCCAATTCTCCGCAACTATCCAACCGCAATGTGC---GGTCGCACTTTGGTCCCCGCCCGCCCTAGGTTGACCGAAGTTGTGCCTCTGCTTCCCTCCCCACCTGACACGCAACGGCTCGTGGGGGCTGAGGGTCGGGATCGCGGCCGGCGTAGCGGCCCTTGTA-AGGAAACTCACCGGTACCAGGCAAGACCTTTGTGGTAGCTGCGGTCGAAAAAGTGGGGCTCGGCGCCCACGGCGCGCACGTCGGGGTGCACGCGCAGAAACTCCAGCAGCGCCCGCGTGCCGCCCTTCTTCACGCCGATGATGATGGCCTGCGGCAGCTGCTTGCTCCCAGCACCGCTGAAGAAGCTCGAGATGGGACTGGGGGAGTCCGGCGCCTCTGGACTCTGCTCCTCCTGGCTCCCGGCGCCTACTGTCTTATCCTTGCCTGCAACCAGTGAGTTGGCCGGAGGTGCCCGGAAGGGCATCTTAGGGGATGTCTCATTCGGAGCTGTGATCAGGGCTGGTTGAGCGTGAGTGGCGCGGGACCCGGAGCCCAAGAGCAGCAGGCCCGGAGCGGCGGTACAAGAGCCGGCGCACGAGTACAGGAACATGTACAGCCAGATGCAAAGCATGGCGAAGAGCAGCGCGAGCTTCCTCCTCACcggcggcgggggcggcggcggctgc-ggcAGGAACCGGCCCGGGACATCGAGGCAGGACCGGCCGCCGCTCAGGCGCTGCCCCATACGCGGCCCGCGGGCGCGGCCAGGGGCATGGCTCAGCACATGGCACGAGTCCCGCCGGAACAGAGAGCACCGCGACGGTCCCCTG a score=176078.000000 s hg15.chr22 14538067 1585 + 49476972 TCTCCAACCTC--CTACTTAACAGCCCCTGTCTCATATGCTGGTTCCTG--TCTCTAATAGTTCCTAGGTGTCTGGGACCGGTGACTTGGCCCCTGTTATCCCCGAGCTCAGCCGCAGGCTTCAGGGACCTGGGCAAAGTGTGGATAACCCTGCCCGCCTTTTGGGGAG-GAAAGCCAGTTGCTCCCCTAGCCTCTACTGTGGCACTACGAAGCAAGGGCAGCCAAGCTGATCGCTGGTTTCATCTGCACCACCCCACTCCCTCTGGCAGGTGATGAGATGGCCAGTGACGGGTGGGTTGGCAGCTGGACTGGCGTGGCATGGCTAGCTGCCCTGGGCACCATATTCCCTGCCTGTCACCACTCCTGGTTGTCCAA----CAAAGC-AAAGTCACAATGACAAGATCCAGAGAGGGGAGTCTCCAGCTGGAGATGGTGCCGCTGTCACAGGGCACCAGAGCAGCAATGTGACAGCTTCTCATGGAGG-------------CAGACTCTGTTCCCAGTCCCTACCCAACCCTGGCTTGATCCTTGTCAGTGTCTTATTTCTTTGCCTTGCCTTT--------------ATCTCAGCCTGGCTTCCCTTCCAGGCAGCTC-TGAGTGGCTCTTGGTCCAGGCTTGTCTCCATCTCTCCTTCCTCTTCCCAACTCCCTAAACTCAGGACCCAGTCACTCCTGCTCCTTacatacacacacacactaacacacgcacacactcactctcaccctctcccccccacacactcacacacacTCCCACCCTACCTTAGGAAACAGGTTTCCTTCCATGAACCTTTATTAAGACCTGTGGGGAATGACCAGGATCTGGG--CCCCCAGTGTGTCTGTGA--GCCAGCTT------GTGTGTGTGTGCAAAGGTGTGAGTGTGTGAGCATCCATGTGGCTGTGGAAATTAGAAAGCATGTGTGTACACACGCGAGTGTGACAGTG-AAGTGCTGAGAGTTGAAACAGTGTGCGTTTGGGGTCAGTGTGACCTTGTCTGTGTGGGCACACAGGTGAGCTGTGGCGACGGTGGAGGGATGTGAGTGACTCTGAGTGTGGAAGCTGAGCCCAGGGCAGATGGACAAATGCATCCTTTGAGCT----------CCTGTAG-AGACTGCCA-CTCCATACCT-TGCTCAACTACTCCCTCTTTGTCATCCTGGGCTCCCTCAAATCAGGATGGGGTGCAGGAAGGGGAAGTGAAGCTGGTGACCTATGGGAAGGGGA-CTGTCTGCTTCCTGGGCCTGTCAGCCACTGATCTGTTCCATGTTCCTACAAATACTTACAAATCCCAGCTGCTGAGGAGCAAGACATCCTCCACCAGCCAGTTGGGGCTCCTGGCCTGGA-------------GCTATGGAGCGAGACACATGGGGGAGGGGAGGGGG----GACCGCATCAGAAAGGCTGGCATCAGGGACTCCTGAGTTCAGCTCCTAGTTTTGCCAAAGGTTAGCCTGGGCACCCCAGTATGTCTTCATCAGGAACTGCAGAGCCAGACACACCATCCACGCCTCTGCCCCAGGAAG-CGGCCCTACCTCTGCCTGAAGAGAGAGACTCCCACCTCAACAGCCAGCTTTCTGCCTTCTAGTCACGCCTCTCAATTAGGGGTAAAA-AGAG s mm3.chr11 19060771 1473 - 122862689 TTTCCACCCCCCACCCCATTACAGTCCC------ACTCCCTTTTCTCTGCCTGTCTCATGGGTCCTGGAGTCTTGGGAACACATAGATGTTCCAAAC--TCCCCAAGCCCCACTTGGGAGTTCAGATCCCTGGGCAAGGTCTGATTAACCCTGTCCATCTTTTGGGGAGTAGGACCCTCTTGCTTTCTT----CCTGACACGTCCCTTCAAGGTAAGGACAGT---GCTGATCCCCGGTCTCATCTG---------GGTCCCTCT---CGATGATGAGATGGGCACTGATGGGTGAGCTGGCAGTCAGGCTGGAGTGGCACAGCCAGATGCCTTGGGCGCTCT-CTCCCTGCTTGTCACCACTCCCGGCTGCCCAAGCAGCAAAGC-AAAGCCACATTGACAAGATCCAGAGGGGAGAGGCTCCAGCTGGGGCT-GTGCTGGTCTTTCAGGCCACTGGAGCAGCAATGTGACAGATTCTCATGTGGG------GAGGGGGGGGGCTCGGTCCCTGGTTCCCGCACC---CCGTTTCAGCCCTTGGCAGTCTC-CATTTCTTTGCCTTGCTTTTTGTTTCTTCCTTCCATCCCAGACTGACCT----------CACCTCAAAAATGGCCCTTGGTCCAGGCCTCTCTCCGTGT-CCTCTTTTTCTTCTTACTCACTCA--------------------------CTACACAC---CACACACTTGCATG-----------------------------TCACACATGCACACACGCACACAC---------------------CTCTCCAGGAATCTC--TTAAGACC-ATAGGAAGTGACTGGGACTTGAGTCTCCCCACCCCGTCAGTGATTTCGAGCTGgtgtgtgtgtgtgtgtgtgtgtgCGCAAGCCTGAGAGCATCCGTGCAGATGTGGGAGTTACA----GTGTGCAAGCACACACAAGTGTACGAGTAAAAGTCCTTAT----------GTGTGAGTTGGGCGTGAGCTTGGCCTTGGCCCTGTGATCCCTCGAGTGGGCTG-GGTGA-GGAGAGAGGATGTTGATGACTGTGAGTGTGGAGACCTATCCCGGGACAGATGGGAAAATGCACCCTTCCAGCTGGCATCTCTGGATGTAG-ATGCAGCCAGCCCCACACCC-TTTCTGACCA--CCCGCTTTGTCATCCTGGACTCTCTCAAATCAGGCCAGAGAGTAAG----------GAAGCTGCTGGGCTGCAGGCAGAGCCTCTG-CTGCTCCCCGGGCCTGTCAGCCACTGATCTGTT-CGTGTTCCTATAAATATTTACAAATCTCAGCTGCCGAGGAGCAAGACATCCTGC----GCCAGCTGGGGCTCCCAGGCTGGAAGCTGGCGGGAGGGATCTGGCAAGAGAGGACCACGGGAGGGAGGGAGGGTATGGCTGTTGTGCAGAGACAGGTGTTCAGGACTCCTGAGTTCAGCTCCTAACTTTG-CAAAGCTTAGCCCATGTAGCC--------------------CCGCAGATCTAGAAATATCAGCCACAGTTCTGAATCAGGGAGCCTGCAGAATTCCTGTCAA-ATAGAGGGTTTTCT-CCTTTATAGCCAACCTCCTGCA-TCTACCCATGTCTCCCGGCTGGGATTTAGG-AAGG s rn2.chr10 18665078 1468 - 106208427 TCCCCAC------CTCCACTACAAGCCCCGCCGTGCTTCCTTTCCTCCGAATGTTTCATGGGCCCTGGAGTCCTGGGAACACGTAGATGCTCCGTG---TCCCCAAGCCCCACTTAGGAGTCCAGGTCCCTGAGCAAGGTCTGGTGAATACTGTCCATCTTATGGGCAGTGGGACCCTCTTGCTTTTTT----CCTGACATGTCCCTTCAAGGTAAGGACAGT---GCTGATCTCTGGTTTCATCTG---------GGTCCCTTT---TGGTGACAAGATGGGCACTGATGGGTGAGCTGGCAGTCAAGCTGGAGTGGCACAGCCAGATGCCCCGGGCGCTGT-CTCCCTGCTTGTCACCACCCCCGGCTGCCCAAGCAGCAAAGCAAAAGCCACACTGACAAGATCCAGAGGGGAGAGGCTCCAGCTGGGGTT-GTGCTGGTCTTACAGGCCACTGGAGCAGCAACATGACAGCTTCTCATGGAGGGGGGTTGGGGGAGGAGGCTCTGTCCCTAGTTCCCGCTCC-CTCTGCTTCAGCCCTTGGCAGTCCC-CATTTCTTTGCCTTGCTTTTTG-TTCTTCCTTCCATCCCAGACTGACCT----------CAACTC-AAAATGGCCCATGGTCCAGGCCTCTCTCCAGGTCCCCCCCTTTCCCCTTATTCATCAA--------------------------CTACACAC---CATACACTTGCGTG-----------------------------TCACACACACACACATGCGCACACAC-----------------CTCTCTCAAGGGACCTCTGTGAAGACT-ATAGGAAGTGACTGGGACTTGAGTTCCCCCTGCCCGTCTGTAATTGTGAGCTG--------GTATGTGTGCAAAGACACGAGCCTGAGAGCATCCGTGCAGAGGTGAGAGTTAC-----TTGT----TCACACACAAGCGTACAAGTGAAAGTCCTCAT----------GTGTGAGTTGGGTGTGAATGTGGCCTTGGCCCCATGAGCCCTCGGATGGGCTG-GTT----GAGAGAGGATAGGGATGACTTCGAGGGTGAAAACCTAGCTAGGGGCAGATAGGAAAATGCACCCTTCCTGCCGGCATCTCTGGATGTAGAAAACTGCCAGCCTCACACCCTTTTTTGACCA--CCCGCTTTGTCATCTTGGA--CTCTCAAATCAGGCCAGAGAGTAAG----------GAGGCTGCCGGGCTGCAGGCAGAGCCCCTGCCTGCTCCCTGGGCCTGTCAGCCACTGATCTGTT-CGTGTTCCTATAAATATTTACAAATCCCAGCTGCCGAGGAGCGAGACATCCTGC----GCCAGCTGGGGCTCCCAGGCTGGAAGCTGGTGGGAGGGATCTGGTGAGAGAGGACCATGGGAGGGAGGGCGA----GGCTGCTGTGGAGAGACAGGTGTTCAGGACTCCGGAGTTCAGCGTCTGACTTTG-CAAAGCTTAGCCCGGGTGCCC--------------------CTGTAGGTCTAGAAATATCAGCCAAAACTCTGAATTAGGAAGCCTGCCCTACTCCTATATG-ATAGAGGGTCCTCC-CCTTTATAGTGATCCTCCTGCA-TCTACCCATGTCTCCCGATTGGAATATAGGAAAGG a score=5311.000000 s hg15.chr22 14539788 466 + 49476972 AGCTTCTTACCCTTTAAACACCACACAAAATTCTCCTGGAGTTCCTGGGGGAGATTGTCTCTTTGAAATCAAAATCTTTCCCAGGACACCTTGAGC-AATCCTTCAGGCTCTTTCTGGATTGGAGGCAGAAGAAATTGCAGCTCGGTGACCCTCCCTTTGCAAGGGCCCCCTCTGCA--------------------------------------------------------GCCCTTGAGGGG------------------------------AGTGAAAGCATTTTCATTTGGCCTC-ATGCCCAGCTGAAGCCAGCTCTTTCACTTCTGGAGCTGGGCTGGTTGTGATAA----CCTGGAGGAGGGGGAATGAGTTGGGATGACTCACT---TGCCCCAGCCCATCAACCCTGGCCTAGGCTTGTGGCCAGACACC--------TGGTTAACCACCCCAAGAGAGCTTCCTTTCTCAGGGAAATAATGATTATTGATTATTGATCCTCTATATC--CACTTCCCAGGACACTG-----------TCAGGC------ACACCACAGGCCCTTGGGCATTTTTGTG s mm3.chr11 19062244 386 - 122862689 ATCTTCCGACATCTTGGATA--ACACAACACGCCCCCAC-------------------CCCCTGGAAGTC------------------CTTGGAGGATTCTGTTCGGGAGTGTTCTGGATCGGAGG-------------AGGCCTGTGGGCCTGCAGCT-CAGAGTTCTTCTCTGTA--------------------------------------------------------------------------------------------------GGCTAAAGCATTTTCAGCAGGACTTAACCTTCTGCCCCAACTAGCTCTATCACTTCTCTTGCTGGGCTGGAAGTGAGGGAATTCCTGAAGGAGGAG--------------GACCTACTACGTACCCAAGCCTGCCTACACAGCAGTGG----GTGCTCACATATCACATATCACGGGGAACTGGAGGAGGGGAGTACCCTTTCCTAGACAGA-------GACTGAAAACTAATTCTCTATGTC---------TAGCACAATG-----------CCAGGCCCTGGGGCATCATAG------GAGCTGTCCAACT s rn2.chr10 18666546 428 - 106208427 GTCTTCTTATGTCTTAGATA--ACACAACCCCCCCCCACACACAC------------ACTCCCAGAAGTC------------------CCTGGAGG-TGCCATCCAGGAGGGTTCTGGATTGGAGG-------------AGGCCAGTGGTCATGCAATT-CCGAGTTCCTTTCTGTGGGCTAAGGCAtttttttttttcttttttcggagctggggaccgaacccagggccttgcgcttgctgggctctaccactgagctaaatccccaaccccTGGCTAAGGCATTTTCAGCTGTACTT-ACCTTCTGTCCCATCCGTCTCT---ACTTCTCTTGCTGGACTGGAAGTGGGTGAATTCCTGATGCAGGAG--------------GACCTACT---TACCCAAGCCTGCTTAC--------------------------------------------------------------------------------------AAAACTGATTCTCTGTGTCTGGGCCTAGTAGCCCAGTGCCAGCCACACTCCAGGCCCTGGGGTGTCCCAG------GAGCTgtccagct a score=8090.000000 s hg15.chr22 14540273 76 + 49476972 TGGATCACCATGTCAAGCTTTCCCAATAGCAGTTGGTGGCAAACTCCAACTCCTACTGTCAGAAGGCAT------------------CACAAGG s mm3.chr11 19062854 93 - 122862689 cACCTTA-CATCCTCCAGGTTCCCAGAAGCACTTAAAGGCATACTCCAGCCCTTAGTGGCAGAAGGCGTGGGCTCAAGATCTGATAGCTCAAGC s rn2.chr10 18667199 93 - 106208427 cggcttg-catcccccatgtttccataagcatttaatggcagactccagatcttagtggcagaaggcatgtggtcaagacctgatatctcaggc a score=28723.000000 s hg15.chr22 14540349 438 + 49476972 CCCAGATATGCTGGGCCTCCCAG-CTCAGGCAAGCCCAGCTGTCAGGGACACAG---AAACCCCTGACACTGAGCCAAGATCTTTTCCCCCTGTCTTGGCTTGAAATTCAGATATATTGATGTTGAGCCCTCCTGGCCCGCAGTGGGA-CCCCCCTTAGCCTTACAGAGGTAATGCCTATATCATGGCCTAGGTTTTTCCAAAAAGCCAGACTCTGGGAAGAACCTGGAGTGGAGGAAAAAACCAGGCAGAGGTAACCCCATGAGGGGCTCTGGCATGTGACTCC-----CTGCTGGAAACGTG-------CCCCTAACAGGGCATCAAAGCCAGGCAGGCAGGGGCTCCTGCTCTGCCAGAGGCTGGAAATCAGGACT--GCAGCTTCCCATCTTACTCT-GGGGATGCAGGTCAACTATTTTCCCTCAGATGAGAGATGCTGAAGTTCCAATTTTA s mm3.chr11 19062947 361 - 122862689 CTCAAATGTTCCAGGGCATCCGGGTTCAAACAAATCCAG----TATGGACCCAATACAAACTATCCAGACT-ATCTGTGATTTCATACTCCTGAC-------------------------TGGTGAGCCCC-CTGGTCCCCGATGGGA-CTCCCTTTGACCTTTCCTAGGTAATGCCTATACT---GTTTATGTGTCTTC------------------AAGGCCCTGTAGTGAAAGGAAAAAAAAATTCAAAGTGG--GCAAGGGGGGACCCG----GTGACTCCGAGGGTTCCTGTATGCTTGTATGAGTCGCCCAACTGGAACTCTA---CAAGCAGACAGGGAC-TGTGCTCTGCCAGAGGGCACAG---AGGGCCCGGGGGCTTTCCATCCTACTGTCTGGCATCCAGGT------------CTCA-------------------CCATTTTTA s rn2.chr10 18667468 349 - 106208427 CTCAAATGTTTCAGGCCATCCGG-TTTGAACAAATCCAG----TATGGACCCAATACA---------GACT-ATCTACAATTT---ACTCCTGAC-------------------------TGGTGAGCCCCTCTGACCTCCAATGGGGGCTCCCTTTGACCTTGCTCAGATAATGCCCATACT---GCTTATGTGTTTTC------------------AAGGCCCTGTAGTGAAAGGGGAAAAAAATG-AAAGTAG--GCAAGGGGGAACACG----GTGACTCCGAGGGTTCCTGGCTGCTTGTATGAGTCACCCAACTGGAGCTCTG---CAAGCAGACAGGGAC-CTCGCTCTGCCAGAGGGTACAG---AGGGCCCAAGGGCTTTCCACCGTACTTTCTGACATCCAGGT------------CTAA-------------------CCATTTTTA a score=125789.000000 s hg15.chr22 14540787 1066 + 49476972 TAAGATGAGAAGAAGGGCTGAGGTGATGCCCATTCTG-CCACTTTGCTGAGTCCAGAGCTGTGATGAAGAGGGAGAAGTCACAGGACAAAGAAGGGGGCTCAGGGACCCCGGAGTTTTCCTTGGCAGAAGTCAACTTGCCCCGCCCCTGAGAAAACTCTGACCTCAGCTGCCAGGGAGGAA-AGCAGGGACTGG------------GGAGGAGGG---------GACAAGGAGAGGGAATAGTCTGGTGCT---CTGTGCTCTGGGAGAGAAGTCTGATGGCGGCAGTGACTCAGGAAGGGTTAAGAATATTCCTAAAATAGCCAAGCCACAGCCTAAGCCAGTTCATGAATGCCTCTTCCAGAGAGCA--GATCAGTAGCAGGAAAATTCAGCCTGATCTTCGCCCCACTGCCTGCCGCCTGCCCCTGGCTACTAGTTA-------AGCCTCCCACCCTGTCCCCTT-CACCAACTC---CTGTCCTAGT--GGGGATGGGGTAGGAGTAGTCAGAGGGGCCAAATCTCC----CCCAGTCAACAGGGAACTCCAGCTGGGACCAGGAGTACTGGGCCCCAGTGCCCGCCACCACCCCCCACCCCCATCCACATTCCTGGTCTGAGTCAGGTAGGAGGACTTGGGACAGACAGGCAAAGTGCAGGCCTTGTACATGGGATGGAAGGTGCCAGAAGAGAGCAGCCAAATTCTCCCACCCACACACATGCATCACCAGCCATGATCAGGTGGGACCTCCAAGATCATCCTCAAATACTGCCTTCTCCTAGCTCTGTGT-TCCCCTTTACTTAGGGCATCTTGGAGTGAGAT--GGGCAGGGAGGGGTCGAGTGAGTCCCTTCATGAACAAACCTTATCTTTGTTTCAGGG-Acaggactgggtacataatttgcaggacccggtgctaactgaaaatgtggagtctgttcaaaaattgttaagaatttgaaggcagtgacaacatagcactaaaccaagtt-----caggtcccctctgacagtggggcttttgccactgcacaggtgg----cacctctatgaagccagccttgTGCAGGGGTTTGGTTTAATGAACATTTACTTAGCGCCCACTGCTCAGCTC s mm3.chr11 19063376 1043 - 122862689 TAATAAGACAAGAAGAGCTGAGAAAATTCTCAAAGAGATCACTCTCTGTAGTCTAGAACTTC---------AGATAGGT-AAAGCACAGAGAGT-GGGATCA-GGAGCCAGGAGTTTTCTTTGGTAAAAGTCAAA---CCTTGACCTT--------------CTCAACTTGTAGGGAGGAAGAGCAGAGGCTAGGTGG--------GGTGCAGGGCGGG-----GGCAGAAAGGAGGGGCAATCTGGAGCTGGCCTGTGTTCTGGGAGAGAGATCTGGCAATGGCAGCGGTTCTGGAAGGGTTAAGAATATTCCTAAAATAGCTGAGCCAGAGCCCAAAGCAGCCGGCTAGTGCCTCTCCCAGAGAGCATGGATCTATAGCAGGGAAAGCCAGCCTACTCTGCACCCCACCGCCTGCTGCCTGGCAC-GGCTGCTAATTAATCTCACAGCACCCCACCATACACACTCACACCAACCCCTTCTATCCCAGCAGGAGGCCAAGGGAAGAGAAAGCAGAGGGGTTATATCATATTTCCCCAAAGGACAGGAAAGCCTAGCTGGGACCGAGAGT-CTGATGTCCAGTGGCC----CCATTTCATGTC--------TGCCCCTGGCCTTGGGCTAGGAGTGGAAC-----ACAGGCAGTCACAATGCA----------ATGAGCTTGTAGCTGACAGAGCACTGT-GTCAAGTTCTCCCA-----ATATATACATGGTCAGCCATGGTA-GGTGGAGATTCCAGGAAGCTCACTAAACACCAGTTTTTCTTAGACCTGTGT-CCCCCTCCACTT-TGGCATATTGGGGTGGTGTTGGAGCAGGGAAGGGACAATGAAGTCTCTCCAAGATGAAACTATATTTCTACCTTAGGGAGAAGGACAAGCCAGGCTCtttgcagagcctagtgggaaatgaaaacatcacattggttcaaaaatgggtagggatttcagggtggcaagaacagagcatcaaatgaaattcaagccaagtctattctgaatgccaggcttacatgactgcacagacttcattcatgtccatgaaggcatccctgTTTAGGGGTAC-ATTTAATGGACATGGACTATGTACCCATTGCTCAGCTC s rn2.chr10 18667885 1035 - 106208427 TAATAAGATGAGAAGAACTGAGAAAATTCTCAAAGAGATCACTCTCTGCAGTCCAGAACTTC---------AGATAGG--AAAATGCAGAGAACAGGGTTCA-GAAGCCAGGAGTTTTCTTTGGCAAAAGTCAAC---CCTGACCCTT--------------CTCACCTTGTAGGGAGAAAGAACGGAGGCTCGGGGGCGGGGATGGGAGGAGGGCTGGTGGTGGACAGAAAG-AGGGACAATCTGGAGCTGGCCTGTGTTCTGGACGAGAGATCTGGCAATGGCAGTGGTTCTGGAAGGGTTAAGAATATTCCTAAAATAGCTGAGCCAGAGCCCAAAGCAGCCAGCTAGTGCCTTTCCCAGAGAGCATGGATCTATAGCAGGGGGAGCCAGCCTACTCTGCACCCCACCGCCTGCTGCCTGGCAT-GCCTGCTAATTAATCTCCCAGCACCCCACCATACACACACACACCAACCCCTTCTATCCCAGCAGGAGGCCAAGGGAGGAGAAAGCAGAGGGGTTATATCTCATTT-CCCAAAGGACAGAAAACTCCAGCTGGGACCCGGAGT-CTGTTGTCCAGTGCCC----CCATTTCATG----------TGCCCCTGGCCTTAGGCTAGGGGTGGAAC-----ATGGGCAGTCACAATGCAG----TG---ATGAGCTTGAAGCTAACAGAACACTGT-GTCGAGTTCTCCCA-------GCATACATGGTCAGCCACGATAGGGTGGAGACCCCAGGAAGCTCACTAAACACCAGTTTTTCTTAGATATGTGTCCCCCCTCCACTT-TTGCATATTGGGGTGGTGTTGGGGCAGGGAGGGAACAGTGGAGTCTCTCCGGGATGAAAC--TATTCCTGCTATAGGG-GAaggaccagccagactctttgcag-----agtgggaaatgaaaacatcgcattggtttaaaaactggttgggatttcagggtggt--gaaaagagcatcaaacgaaattcaagtcaagcctattctgaatgcggggctcacaccgctgcacagactt----------catgaaggcatccttgTTTAGGGCTCC-AATTAATGACCATGTACTATGTACCCATTGCTCAGATC a score=84636.000000 s hg15.chr22 14544458 852 + 49476972 ATATTTTTGTTTCTCTGATTTAGGTAAAATACCTCTTTTCTGACAAGACTAGGACTCTTACATAGACTACCATGAACTAAAAGAAGCACAACATTGCCAGAGTAACCTGT-GGTACGTGTATTAATCACTTACTGAACATTTTACTTGCATTCTTTCAAGAAAATGAGTTTATTTTTAGATACTTAGTCAAATTATCTTGACTCTCTGATGTTTTTAAAGAGTATTTATAATAGATTTAGTTATTTCATTAATATTGAATGTATTTAAAACTA--AATGCATCCCAAAGGAAA---CTGAACAGTTAAAACATGGTTTATTTCTGCAAATATTAACTTAGTGAGAAATCCCAGGGAATCTGCACATTTGTGTTTTCTATCTAACAATCATGAATTTCTTAGTGTATGTTTTGA-TCAGGCTGTCTTTTGATCACAGTTTTGTGACCACTCTGTTATTCCTCTCTCTCTGGCAGTCATTTCCCAGAATTGACAAGGAATTCATCCTGAGATGATTTCTGCTAAGTAAATCCTAGCACTTCTTGACACTTTAGAAAAGGCTTTGGAATAATTTTATATTAGCATTTTTCACCTGCATATTTTTACATGTAAATATAAGCTGTGAATGCATTACTTTGAAAGAGAGCCAGGATAAAATTTAAAG--AAacatggttttagaagtccaatggtagtataagatttcacaaagaaacagactgctcttcattcagtacttcctatttactccccagacacagccaacttcaacattttttacttaaaaaat-gtatttttatatttcaaaataaca----------tgttta----------------tgtGACCT-----GTC---------TCTCACCCATCCTGCCCTACTCTGGCT------TTACCCC s mm3.chr14 65177233 780 - 115844145 ATTTTGTTTATTCTTTG-CTTAGGTAAAATACCTGTTTTCAGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGGTGAGTATGTTTGCCAACTTCGGGAGACCCCATTCCTAGTCTTCCAACAAAGCATGGTT--------------------GTTATTTTGTTGTGTTGAGG----------------------GATTTGGATGTGTGGTTGCTATTAAATATGTTAAAGGAAAA-AGTGGGTTCCCCAGTGAATCTTTAAACAGCTAAAATATGACTTGTCTCTTCAACA------TTGCTGAGAGGTCCCAGGGCACCTGTGGATTTGTACACATACTCTAAGAATTACTCATTCTC-----TGTGTTTGGATTCA-------------------TCTCCTGACTACTCGTTTTTTTC-------CTGCCAGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGGTAAGTAAAGTCTAGCATGTCTTACAACA-TAG--------TGGGGACA-------------------CATCAGGATAGTCTTAAGTCTAAATATAAATTGTGAATATGTTAGTCTGAAAAAGAGCCAGGATAAGGTTTAAATTCAGATGGGGTTT---AAATCCA----CACCACAGAGCTTGTAACATCAACAGCCTGACTTCTGTCCAGCCCTTCCCATTT-----------ACAGCCACCTGCAAC-ttttttacttattttttaaaaattctatatttcaaaataatattttttaCACTATTTAAAAACTATAGACACTGTAGGGCTTTGTACATCTGGGGAAGATCCGGCTCTCTCTGCTCTGGTGTGGCCAGCCCACTACCCC s rn2.chr15 60260076 768 - 99209255 ATTTTGTTCATTTTTTG-CTTAGGTAAAATACCTGTTTTCTGACAAGACTGGAACTCTTACATGTAATATCATGAACTTCAAGAAGTGTAGCATTGCTGGTGTGACCTATGGGTGAGTATGTTTGTCATCTTCGGGAGACCCCGTTCCTAGTCTTCCGACAAAGTGTGGTG--------------------GTTATTTTGTTCTTTTGAGG----------------------AATTTGTATGTGTGGTTGCTATTAAACATGTTAAAGAAAACTAGTGGGTTCCCCAGTGAATCTTTAAACAGCTGAAATACCACTTGTTTCTTCAACT------TTACTGAGATGTCCCAGGGCACCTGTGGATTTGTACACATAGTCTAAGAATTGCCCATTTCC-----CGTGTTTGGA-TCA-------------------TCTCCTGACCACTCAGTTTTTCC-------TTGCCAGCCACTTCCCGGAACTAGCCAGAGAGCAGTCCTCAGATGACTTCTGGTAAGTAGAGTCTAGCATGTCTTACAACATTAG--------TGGGGATA-------------------CGTCAGGATGGTCTTAAGTCTAAATATAAATTGTGAATACATTAGTTTGAAAGAGATGCAGAGTAAGGTTTAAATTCAGACATAGTTT---GAACCCA----CACCACAGAGCTTTCAACACCAACAGCGTGTCCT-TGTCCAGTCCTTCCTATTT-----------ACAGCCACCTGCAAC-ATTCTTGCTTATGTTTT-TAATCTCTGTATTTCAAAATAACA--TTTTATACTATTTAAAAACTA---------TAGGGCTTTGTACATCCGGGGAAGATTCAGCTCCCTCTGCTCTTCTGTAGCCAGTCTGACATCCC a score=3364.000000 s hg15.chr22 14545310 451 + 49476972 C-------------------TTCAGAATATTTAAAATTTCTTGAGTATCCTTAGCATATACCATTCcaatcatgaatcttggggtaggcttattttttttttaat-ttgtgcatttaataaac-ccctagtggtacatgtctg---------tttttcttgttaat-tcttggaaatgtctttctattgtttctacaataattttcttcccctctagcttccctttttcttctggatctcgttaggta-----ttgaacctcttgagttgattttctaatttttgtcatctccctctctcattttttgtattttgtgtttaattttctggtatctaattcaccttgattttctatctttctggtgatattttcatatgctgtcaCTCTTACAGTTGTCAAACGCCTTCTCCTGACCTTGCCCTTGTgttctgtttactctgcccacctcttcgattctccccattgctacctggtgttttggtttct s mm3.chr14 65178013 378 - 115844145 CAGGCCATCTTCCCAGTCCTTTGAAAATATTT---ACTTTCTGTATTTCTTTAGCAGATGAACTTTTAACTGTG-ACCTTGGGGTAGGCTGTTTTTCTTCATCATGTTGGGTAGCTAATTTACTTTTTACTAGGACACATCTGTCTTATAAATTTCTCTCATTGATATTTGGGAAACATCCTTGTATTATTTC----------------------------------------------AGTTAGGTAGATAGTTGGGC--TTTGAGTTGATCCTCTGG-TTTTGTCATCTCGCTCTTCCCTTCTCCATG---------CGGGTCTCCTGCATTT--TTAACC-----TTTCTTCCTCCTTAGCA--ATTTTTATGCACACTCACTTCTAT--TTCTCAGGAGCACACTCCAGTTCTTGCTCTTA------------TCTGCCCATTTCC------------------------TGTTCTGTTTCCT a score=1102.000000 s hg15.chr22 14546048 68 + 49476972 ttggcttcttaattttgttttataagctttcttcaaaggcctggtcatcatttgctgtgtgtttatat s mm3.chr14 65178391 61 - 115844145 ATGTC----CAA---CACCTTATAGATTTTCATTGAAAACTTGGTGAGCACTGGATGTGTGCTCATGT a score=61674.000000 s hg15.chr22 14551168 536 + 49476972 AAGGCTGCCTAGGCCAGTGCAGTCCAGTAAATCCCTCTTTAATCTTCTTTTCCACACAGACAGCAGTGATGAGCATGCCCACGAACCCACATGATTATTTTGGG------------AAAAATGAAA--GAGTTGTATTCTTTTTGTGGTAGTAATTCCACTTCCAGGGGCAAATACATTTTGATTATTTTATCACCTTTCAGTGAGTT-GTTTTTGTTCTTTAACCAAGGATGTATGTTTGAGGTAAGAAGTAAAGCATAAAGTATATGATTTTTTGTGTGTATTTTTATCTTGCTATACCCATAGGGAATGTTTAATTCTGCCTTGGAAGTGGCCATATTTGAAGGTGCTGTGATTCAAACTGTCAGCGAGATAAGGCAGCAGATCAAGAAAGCACTCCGGGCTCCAGAAGGAGCCTTCCAGGCCAGCTTTGAGCATAAGCTGCTGATGAGCAGTGAGTGTCTTGAGTAG--TGTTCAGGGCAGCATGTTACCATTCATGCTTGACTTCTAGCCAGTG-TGACGAGAGGCTGGAGTCAGGTCTCTAGAGAGTT s mm3.chr6 30885768 469 - 149950539 AAGGTTGTCTAGGCCACTTCACACCTGTAAATCCCTCT------TCCTCTTATAATGAGCTACCAGTAATTAGCCTACTGATGAGCTCAGAGAAAGGTTTTAAATGTTAGTTAAGTGAAAATAAAGTTGAGCAGTATATTTTTTGATGT---------AATTTCA------------------------------CTGTTAGTGAGTTGGTTTTAGTTTTTTAAGCAAAGCTATAAGT--------------AAAGCATG-------------TCTGTGAGT--TTTTATTTTGT--TGCCTGTAGGGAATGTTTAATTCTGCATTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGAATAAGGGGACAGATCAAGAAAGCACTCCGGGCTCCCGAAGGAGCCTTCCGCGCTAGCTTTGAGGACAAGTTGCTAATGAGTGGTAAGGATCTTTTGTGGTTTGTTCAGGATACTGTTTTACCATTCATTATTGA-GTCTAGCTGCTGCTGATTAGAG--TGGGTT------TTCAGAAGGCC s rn2.chr4 31852757 454 - 183307734 GAGATTGTCCAGGCCAGTTCCCACCTGTAAATCCCTCT------TTCCT-------------CCTGTAACAAGCATGCAGATGAGCTCATAGAGAGGTTTTGAATGTTA-----------ATGAAGTTGAACCTTATATTTTTTGATGT---------ACTTTCA------------------------------CTTTTAGTGAATTGGTTTTTGATTTTTAAGCAAAGCTGTGAGT-----------GGTAATGCATG-------------TCTGTGAGTGTTTTTATTTCTT--TGCCTGTAGGGAATGTTTAATTCTGCGTTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGAATAAGGGGACAGATCAAGAAAGCACTCCGGGCTCCAGAAGGGGCCTTCCGCGCTAGCTTTGAGGACAAGTTGCTAATGAGTGGTAAGGATCCTTTGTGGTGTGTTCAGGACACTG--TTACCATTCATTATTGA-GTCCAGCTGCTGCTGATTAGAG--TGGGTTTTCATATTCAGAAGGCC a score=15811.000000 s hg15.chr22 14551704 890 + 49476972 GAGCAGCTCCAGCCTTAGATCTCCCAGTC------TTATGCGGTGTGCCCATTCGCTTTGTGTCTGCAGTCCCCTGG--CCACACCCAGTAACAGTTCTGGGATCT---ATGGGAGTAGCTTCCTTAGTGAGCTTTCCCTTCAAATACTTTGCAACCAGGTAGAGAATTTTGGAGTGAAGGTTTTGTTCTTCGTTTCTTCACAATATGGATATGCATCTTCTTTTGAAAATGTTAAAGTAAATTACCTCTCTTTTCAGATACTGTCTTCATGCGAACTTGGTATCCTGTTTCCATCCCAGCCTTCTATAACCCAGTAACATCTTTTTTGAAACCAGTGGGTGAGAAAGACACCTGGTCAGGAACGCGGACCACAGGACAACTCAGGCTCACCCACGGCATCAGACTAAAGGCAAACAAGGACTC--TGTATAAAGTACCGGTGGCATGTGTATTAGTGGAGATGCAGCCT-------GTGCTCTGCAGACAGG---------------------------GAGTCACACAGACACTTTTCTATAATTTC-TTAAGTGCTTTGAATGTTCAAGTAGAAAGTCTAACATTAAATTTGA-TTGAACAATTGTATATTCATGGAATATTTTGGAACGGAATACCAAAAAATGGCAATAGTGGTTCTTTCTGGA-TGGAAGACAAACTTTTCTTGTTTAaaataaattttattttatatatttgaggttgaccacatgaccttaaggatacatatagacagtaaactggttactacagtgaagcaaattaacatatctaccatcgtacatagttacatttttttgtgtgacaggaacagctaaaatctacgtatttaacaaaaatcctaaagacaatacatttttattaactatagccctcatgatgtacattagatctct----------aacttgatcatcctatatgtctgc s mm3.chr6 30886237 839 - 149950539 GGGCAGCTCCATCTCTG-----TCCAGTTGGAATGTCCTGTACTTAGCTGGCTCACATTGTTTGTGCTGGC---TGGGCTCACACCCAG----ATCTTTGTGATATTTAATCATAGTCAGTATCACAGTCTGTTAAGTGTT--GATACTGTTTAATCAGGTAGAGG-TGTCGGGGTGA-------------------TTTGGAATGTG----TGCAT----TGCTTGAGATACAAAGCTTGTGAACCTTTTCTTCTAGATATTGTTTTCATGCGAACTTGGTACCCTGTCTCCATTCCGGCCTTCTACAATCCAGTAACATCTTTGTTGAAACCAGTGGGTGAGAAGGATACCTGGTCAGGGATGCGGACAACACATCAGCTGAGGCTTGCCCATGGAATCAAGTTAAAGGCAAACAAGGATTCCTTGTATAAGGTAAAGGTCACGAGTGTCTGTGTTTCTAGACAGCGTCCTACAGGTGCTTTACGTGTGAAATTTTGGTTTTTATGGTGCTTTGCTCTGAGCCAGCCCACCAGTTTGGAATGACTCCTTTTTATGACTTGAATTTTCAAGTATAAAGTCTAGTGCTAAATTTAATTTGAACAACTGTATAGTTTTTGCTGGTTGGGGGAAGGAA----AAAAAATGGTGGCAGTGTTTTTTTCAGAATTAGAAG----------------TGAAATGAA---AACTTGTTGTGTGTGAGGAT----------TTCTAATGACATGTGGTGGTTGCATACTG--------AGTGAAGCCGGTGAGCAT-TCTGCCAT--------GTCACCCCCTCGTGCTCAGTA----------------ATGTACTTTACAGAAATCCTAAACTCAAAAGATTGATATAAACCATG---CTTCTTGTGTATATCCGGTCTCTTCTCTGGGTAGTCTCACTCAGCCTGCATTTCTGC a score=14080.000000 s hg15.chr22 14564797 165 + 49476972 AGCTCCATCTTGCTTAGATCTCCTTATTGCTCAGAGTTTCATCTGCTCTGAGCACCATCTTGTTCAGAGCTCCATCTTGCTCAGAGTTCCAACTGCTCAGAGAACTGTTGAGAGTTCCAACGACTCC-AAGCTTTATCTTGCTCTGGGCTCCATCTTACACAGAGG s mm3.chrX 65986779 154 - 149996094 AGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTCCCTGGAGCACCACCTTCTCTGGAGCACCATCTTCTCTGGAGCACCACCTTCTCTG-----------GAGCACC-ACCTCCCTGGAGCACCACCTTCTCTGGAGCACCATATTCTCTGGAGC s rn2.chrX 115109498 134 - 133900917 AGCACCACCTTCTCTGGAGCACCA----------------ACCTCTCTGGAGCACCACCTTCTCTGGAGCACCACCTTCTCTGGAGCACCAACCTCTCTG-----------GAGCACCAACCTCTCTGGAGCACCACCTTCTCTGGAGCACCA-----TCTGGAGC a score=462.000000 s hg15.chr22 14564962 27 + 49476972 AACATCGGCTCC-AAGCTCCATCTTGCT s mm3.chrX 65986933 28 - 149996094 ACCACCTTCTCTGGAGCACCACCTTCCC a score=15951.000000 s hg15.chr22 14564989 175 + 49476972 TGGAGCTCCTTC--TTGTCTGAGCTATATTTGCTCTGAGCTGGACACTCCATGCTCCATGGTGCTCTGAGTTCCATCTGCTAAGAGCTCCATCTGCTCC-AAGCTCCATCTTGCTTGGAGCTCCAATCACTCC-AAGCTCCATCTTGCTCTGAGCACCATCTGTTCT-GAGCTCCACCTT s mm3.chrX 65986961 149 - 149996094 TGGAGCACCACC--TCCCTGGAGCACCATCTTCCCTGGA------GCACCATCTTCCCTG-----------------------GAGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTTCTCTGGAGCACCACCTTCCCTGGAGCACCACCTTCTCTGGAGCACCATCTT s rn2.chrX 115109478 150 - 133900917 TGGAG-ACCACCCTTCTCTGGAGCACCACCTTCTCTGGA------GCACCAACCTCTCTG-----------------------GAGCACCACCTTCTCTGGAGCACCACCTTCTCTGGAGCACCAACCTCTCTGGAGCACCAACCTCTCTGGAGCACCACCTTCTCTGGAGCACCATCTG a score=22912.000000 s hg15.chr22 14565851 175 + 49476972 TGTTTGTTCACAGACTGTTACCACCTGTGGGTCATTTGACGGGAGGTGACCTCACACAGCAATGCACCAGGCAAATCACCAACTGAAAGAATCACTGAAACAACATGTGTCTGCTTA------TTTCAAAGAATGAATAGGAGTCAGTTGAAGGTGATTAAGTCAGCAACATCT-TAAG-----GTG s mm3.chr1 185632648 179 - 195869683 TGTCTGTTT-CAGAAACTTATTGCTTATGGG-CACTTGACTGGCAGGG-CTCCAGATAGTACGACACCAGGCAAAAAATTAATTGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGTTCAGTTGCAGATAATAAAGGTAATGAATTATATAAG-----GTG s rn2.chr5 10510785 180 + 191625135 TGTCTGTTT-CAGAAACTTATTGCTTATGGG-CACTTGACTGGCAGTG-CTCCAGATAGTACGACACCAGGCAAAAAGTTAATTGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGCCCTCAAACAGATGAAGGAGTTCAGTTGCAGATAATAAAGGTAAT----TATATAAAAATCAGTG a score=24571.000000 s hg15.chr22 14566035 147 + 49476972 CAGTAACAT-------CTTAGATGACCAAGAATAATCT----TGTGGGCCCCAAGAACATATGACAATATGGACTACGCCAGCAAAAATCTCACCCATCAGACAACAGCAAATGACACTGTGGCTCAAATGTTAAATGTCCTCTCTTGATGTGTGAAA s mm3.chr1 185633721 158 - 195869683 CAGTGACATCACAACACATAGAAATCCATGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAATCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAAATGCTGAACGTTATCTTTGCACGCATGGAA s rn2.chr5 10511822 158 + 191625135 CAGTAACATCACAACACATAGAAATTCACGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAATCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAGATGCTAAATGTTATCTTTGCACGCATGGAA a score=7364.000000 s hg15.chr22 14584347 620 + 49476972 TGACCCAGGGTCCTGGAGGAAGGGATGAGGTGGGCAGTAGAGATGCTCAGGG--CAGTG-GCCCCTTTCCATCCACACTGGAACTATTTCAATATTTTACCACCAATTCAGCCATTCCCTTGTGCGCTGGCTGAACATCAGCCCTGCTCCAGGTCTCAGTTT-CCCCTTTGTAAAGGGAAAGCTCTGGATTCAGGAGTGATGAGAGGTCATCATGGTCTTGAGATTCCAGGCCTGTAGGCAGGGGGTGAGAGGTTCAC-TAGGAGCACAGAAGGAAAAGATTGGGGAGAGGCAGCAGAGAGAGTGGCTTCCCTTCGGCCCAGGTGGGAGGTTCACAGAGGCAAACTTCCTTCTTCCTCAAGGCAGGACTTGTTACAGTGAGCTTCAGGCAGTCTGGCTCTTAGGACTAACTGG----GATGTCACCCT--CCCTGCAGCATCCACTCCACAGACAACATGAGAGGAGTGTGTAAGTATAACTAGGAACAGGCTAGTG---TCCTGA----TATTCTCTGTGATGGAGGGGACAGCCCTCCTCAGAGACGTGGGGGAGCCCAGAACCATGGGCAGCCTGAACACACCTTACTTTCTCAGCAGTGACAATCAGAACCTTGGCCTACTAAA-GCAGAAATTa s mm3.chr2 4069102 578 + 181423755 TGCCCAGAAGGTCTGGAAGAGGCACTACAGCAGGAAATGAGAATACTCAGAGAGCAATAAGAACTTTTCCATTCACGCTGCAAGAATGACACTATTTTAATTCCCATTTG---AAGTCTTTGTTAA--AGCAAAACAGGAATGCTTCTGTGGGACTCAGTTTACCTCCTTACAAACTCAAGAGTTTAGGTTCAGGAGAGATCAGAGATCATTCAGATTTTGACATCTCTAGTCTATAGG-AAAAGGTGACTGATCTGCCTAAGAGCACAGAAGGTCAGGGTTGGG----AGCCCTGTACAGGATGATTTCCTTTCTGCC-----------------------------------CCTAGACACAGCATCCG---CAATGAGCTTTGGCCCATCAGGCTTAGAGGAACACCTAGAAAAGACCTTGACCTTCCCCCACAGTGTCTACCTGGTACACAA----AAGGGGGTATACGGATATGAGAACAAGTGGGCCAGAGGGCTACTGAAGTCTTTTCTGTGTTATGGGGGCAGTACCCCTAACCAAGGGCCTCAGGTA-CCTGGAGCAGAGAGCAGCATACATACAGATTACTCCCGTAACAGCTATAACCTCAA--------TACCAGATTCAGAACTCA a score=1054.000000 s hg15.chr22 14585567 33 + 49476972 CCAAGGTAGCATGTGAGATTTAAGTAATAACTt s mm3.chr2 4069680 33 + 181423755 CCAAGAGAGTGTGGGGCATTTAGTCCACAGCTT a score=1567.000000 s hg15.chr22 14585917 80 + 49476972 AGTAATTTTGTTTTATTATATTAAGGTCAGGTTTATACCACtttcttctgattacagaagtaatacatgctcattgtata s mm3.chr2 4069713 70 + 181423755 CAT-------TTTAATTATGTTAGGGAGAAGCTTGTCCCAGCTCTTTACAGTTACAAAAG---TGTATGCTCACCATGTA a score=6735.000000 s hg15.chr22 14586031 477 + 49476972 aaaaaagaatatgaaaatcactagtggtcccattgcctaccgatacactatGTGCTGCTTTCTAATCTTTACTTACTCTCCCTCCAtgtgtgtctttgtgtgtgtgtgtgtccgtctgtgtgtTTTTTTTTTTGGCACATAGG-----acaatagctgacatttatagctcccctaccagtgttgagcattatgttaagcaattgaaaaagtgtattt----taactcctacagaaaacctataaaggggaagggcagtataattaacag-aattttccagatgaaaagactgggacCTGACTTCAGGTCACATTTTATATACAGCATTACATTTTACTTCAGACACTTAACAAAGTAAGTGTCCTGGAGAATCTTGGTCTGTTAGTCTATATAATTAcataagcatcttttgtgggattaatagtttttccaaagcatg--cctggaatgcttgcataacattttagagtttaaatatgttgtttatc s mm3.chr2 4070354 383 + 181423755 AAAGAAGGAAATAGGAATCAGTAGTAACCTCTCTG--TTCGGATCCCTGCTATGTTGCTGCCTCATCTGTATT------CTCTCTGTGTGTACACTTGTAAGCTTCTA-ATATTTCTATGTGTTTT-------GTCACCTACGCTGTCATGagagctggcatttatgagtctcttacctgtgttcggcattgtgttaagcaatttatgaagtctatttcatttaatctctacagaaaacctaaagtgaggaa----------atctgtagtaaatttacagatggaaagattggggTCTGGTTCAAAGTCACATTTTATATAT-----------------------------------------------------------------------------CAGGTACATTTTTTGCTATTACCTGTTCTTCAGAAGTATGGTCCTGGCA-GCTC-CATCCCTCACCAGACAACGACTA-ACTGTTTATC a score=11518.000000 s hg15.chr22 14586808 823 + 49476972 aaccattttcatctttgaaacattttaggtctcctctttggctttttcacattataaataatactgtgataaacatccttcagcagaaacc-----ttcataggctagcttcctagaagtagaggtattaggtccaaggttgtgaa-------------ttgttttaaagctattgatttt-tctggataaaattgcttcc-agatatattgtccca---TTGCATTGCAATCA-------------------------GTGGATCTCACCTTC-AGTATTTTGTGCAAAAAAAAAAGAATGTT-----------TCTCCTTTTAAAGATTATATTTAAAATAGCTTTC--------------------AAATATTAA--------------------------------------------AAATTTGTATCTACAAATAAGAGA-----------------------CAGTGAAA---AAATTAATAAAAGAAACACA------------AAAGTAGAAAGTAGATGA--AAACATTAAAATTCAGATCACAGCCCTCTGTCATGGAGAAGACAGCTGCAATAGCTTTTTTGTTCTTTTATCTATCCTTGATACATTTTTCT---TTTAATTAATTTTTACCCCAACTTTTAGTGCTGGCTGAGTTGTCGATTTGTTGCTGGGATGGAAAGAAGAAATTTGCACCTTGTCCTTTGCAGGTTATGAGAGCCCTGTCTGTCCTCGTGGTTATGTGGATGTCTTTTAGATTATTGTGAATATTGAGCTTTGAAAATAACCTAACAGTCAATCAATTGCTGAGATTCTATTACCAGTAGTGGGACACAATGTACATCATGTAGAGAGGCAGACTCGTCGCTGACAAAAGGGCTGACCCCTGGAAAACCAGCACAGAGCCAGCTCTTCTGTCTGAATCCACTCTCTCCAAAACATAACATAAGTCATGGAAAGAAATG-AGTCTCAAGAAATGA s mm3.chr2 4070737 908 + 181423755 AACTATCTTATTCCTCTGAACATTTTAGGTCTTCTGTCTAGATTCTTATATTTATAAGTAATAAAGTTACAAATA--------CTGGAACCACTTGTACATAAG---ACTTCATGGAAATATAGATATTCATCCTAATATCATAAAATAAAATGAGTATTTTTTTTTAAATCACTGGTTTGGTCTGGAAGCAGTGGCTTCCCAGACAATTTAACTCCAGTTTGTATTAGTATCAAATACTACAAAGTGAGGATGGCTCTGTTGATTTTACCCTCCAGTGTTGTTGCTAATTAAACACGTGCATTGGGGCTGAGGTTTTCTTTGTAGGTAGAGTGTTTGCAAGAGACTTTGACTTTGAATCCCAGCACTAAAATAGCAACAAAAACAAACAAGGAAAAACCAACGTGTTTGCTTCCCTTGTTAAAGTCTGGATCTTCAGGTAGGTGATTACCAGGGCATAGTGCACGTGCCAGGAAGAGGCAGAGGAATGGAAGGAGCTCAGCACTGACCAACAGGGCAGGGATTGGGTGGTTATGTACTCAAATTCAAACCATGAACTTCTAGCATG---AAGATACCTGCGGTTG------------------------TGAGATTTCTTTCTCACTGTAAGCGA-----------------AGTGCTGGCTGA-CTGTCAGTTTGTTGCTGGGATGGAGAGAAGCCATGTGGACTCATGTTTGAGAAGGTTATGAGAGCCATGGATGCCCTTGTGGTGATGTGAACATCCATTAGTTTATC-TGGATGTCGAGCTTTGAAAGGAACCTAACAACCAATCAACTTCTGGGCGTATGTCACCAGTAGCAGGTCATGTTGTACATCAAATGGACAAG------------------AGAAGCAGCCCCTGGGAAAGCTAGGAAGACGCCAGCCTGTCTGTCTGAGTC--------CCAGAATATATAGTAAATTGCAAAAAGAATGGAAATCTCACAGAGTGA a score=13540.000000 s hg15.chr22 14587959 788 + 49476972 tggccagttcagtagccactagccacatgtggctattgagtaactgaaatgtggctagtacaactgaccaactaaattgtaaattttgttttatttgaattaattttaattttaatagtcatctgtggctattggctactgtactgggtagcacagAGATGAGAAA-TAATAGAAACCTTTTTGTTCGGTTGTTTCAAGAGCTAACA---TTGTCAAA----AGCTCAATTCCTGTTTTATGTAAGGTTTTGGTTTATATTTTCTCAAAGAAGTGAAGTGCAGAAAAAAGAAAACAAAACAAAAGGATGATCAAGCAGAACTT-------GAAGGGTGAAGCAGAGATACTTAACTCAGGGTGGGGACAACAGCAATGACCTTGTTTGAAATGCAGCTCCTGTCTCTGTG--GCTCTCTGTGCTCTGCTGGGGCATCAGTTCCTTTACTTCTTAGTTAAAGCAGTTATTTCGATGGTGCAACGCTTTTTTGGTGCAAT------GATTTTTTACACAGCTGGTTTATCTCCAGTATGGAAGCTCTCTGCTTAATCATCTTGATTTTTCTGGGCTTGTTCCCACTCTGCAGATGTAAGCATGACACCTGTATCT-CTCTCCCCAGGCTCTGATCTAG-GACGACAGTTTCTATGATGTGCCCATCTAGAGAAATACTCAAATTGCAACTTTAGGAAGAGAAAAAGAGGGCCCTGCAAAAGGCATCTACAGGCCCCATGTGCTGTTCACCTTTCTTATTTATGGGTGAAGTGAGTCCTCATCCATTTATTGGGCAGTTACAAGCAAAGGAATTAT s mm3.chr2 4072833 728 + 181423755 tagccagtacagtagccac-agccacacaaagtcctc----agctgacctatggccagtacaactgagcaatggaattttcaattt------attctagctgatttttattttgaaa--------------ttgatggcagCATTTCATAGCACAGAGATGACAACCTGACAGAAATCTTTCT-------CATTTCAATGGCtaataatatttttatattttatataaaattgtattttatataaagttttaatCTCTAATGACTAAAGGAAGTCAAGTGTTGCATTTAATCCA------AAAAGAATGAGCAGACAGAGCTTTGGTAAGGATGGTTAGAGAGGAGGCAGTTAACTTAAGGCGGGGCCCAAGGCAGGGAATTTGTTT-AAATGCA---TTTGCCTTTGTGCAGCTCCGTGCACTCCACTGGGA-GCTGGGGCTTCTCCTTCCTGGGTGAAGCAGTTATTTCAGAGTCTCAGTG-TTTTCAGACTCAATAGGCTTGATATTTCATACAGCTGGGCTATCCTGGGTATGAAAAGCCTCTCCTT---CAGCTTCAGATTCCCA--TTTCTTCCAGCTGCACGGATGTGA---TG----CTGTGGGTGCTCCATCACAGTGCTGATCCAGTAATGACAG-------------CCCACATATAGAATTAAATAAGTTGCCGCTTTATGGTG-GAAAGACAGTGCTATGCAGAAGG-ATCTGATCATCCCAAGTGCAGTGC----------TTT---GACCCAGTGGGTCCTGATCTCTTTATTTTGCAGTGATAAA-GGAGGATTTAg a score=4929.000000 s hg15.chr22 14589873 435 + 49476972 AGAAGCATTTTAAAAATTGAGGGAAGTTCTAATCAGATAGCAATTGAGGACAGGGCATTTCATCAGCATAAC---ACTCCTCTCAATACATGCCAAAATGGGAAAAAGGAAAAATTGCAAGGACGAAGATGGGACACAGCAAAATGACAAGATGACTAACAAGATGACCCCTGTGGAAAGCATTTACTGATTCAAAAACCAAATAATGAAGAAAATAAGAGCA-AATTTGCTGAGTTTATATGCTCTTTATGCTTATTAGGGAAGGGCAGAAGCCAGCCCCTCAACATTGTTATTATTAATTAACATCATCACCACCTGCTCTTAAGTGTCTAGATACTTTCTAGAATCTAGTATTATCTTCACTCAAATGTTTTTTGGATATGCCCT--------TCGTGCATGTGATACTGCAAAAACATTCTACATTAGCCACAGCAAGATGGC s mm3.chr2 4074196 397 + 181423755 AGAGACAGCTTTAAG-TCAAGGGAAATCCCAATCCAATGG-----GGCAGCTGGGTGTCACATTCCTGTAACTGGACTCCACTA-------GCTCAGAAGGGTTGGGGGGTGAGGGGCGTCTATCATGATT--AAACAGTCAAGTAACCAGAGGCCAAACAAGAGGACTC-------AAAGACTCAGTGG--CAGGGAC---------AGGAAAGTAAGAGAATAATCAGCTGAGCT-----ACCCTTGTTCCGTATGAGAGAGAGGT-GACATCAACTGAT--ATGTTGTTG--ATGAAGTCACACCATCTCTACCCACTTCCAAATGCCCAGGCATGCTCTAGAATGTAGTGTTATCTTCAGTCTATCCTTCC-------TGCCCTCACCCATCTCATCAAGGTGATATTACAGAAGTGTTCTGCGTGGATTACAGGAAGACAGC a score=74849.000000 s hg15.chr22 14593371 682 + 49476972 ATGGAGAAAATAGA----GCAAGTGGAGAGA-----AACTGAGTAGGTAAAAGTGGACAGGGCTTGGTGATGTTTGG---GATATGAGGGATAAGACAGAGGATGGTCTTAGGAAAATCTCCTGTTCTTTCTTTTTGGACAATGGTATAGATGAATAAAAGTTCCAATCACTGGGATAGAAAACACTTGGAAAATATGAGATTCATCCAGGCGAGTCTTTCATAAACTATTCCATAA---TCAGTTTTATAAGTGAAAGGGAGTCAGAACTCATCTCAACCTTGT--TTGCTTCTATCATACTGCGTTGTACCCTGTTGGATCTACTTATCATATTCTTCCTGGTAGCA-----GACTTACCTACTAATG---TTTGCACTTACTCCTTGCCGGCCTGGAAGCTCTGAGTCAGCAGGAGCAGTGTGTGTGCCCACGTGTGTGTGCACTTTCTTGGGTGTGTGTGTGTCTGTGTAATTGGATTCCCCACAGCACATTATTGTTTTATCCATAGTAAATGGTGGATGAATATTTGC---AGTATTTAACTGGACTGCAGCATTGTGGAGGTCAGATAACCACATTTTGATAGACAAGTTGCATTCTAACCTTGAAGCAAACAAAATGCCCATCTTATCAGCCTCCCTCACACTGGCTGTGCCTTTCCTTTGTGGTTGTA-TGTTTAAAGAGCTCATCCAACAAGCTTCTTAAA---------------- s mm3.chr2 4136716 694 + 181423755 ATGGGAGGAACAGA----CAGAGTATACAGACTCCCAAGAAAGGAGGAAAAGGCCAACAGGCCCTGGGGAGGGTGGGGATGATACTCAGAATAAGAAAGACATTTGTCTCAAAAAGATGTAGGTTTCTGGC---TTGGACGTGTGTGTAAATGGATGGAGGTTCCTATGACTGAGCTGGAAAACAC-TGGAAGAAGTGAAACTCCTCT---CAAGTCTTTCATGGGCCATTCCACTATCCTCAATGCCATAAATTA----GAGTGGAGACTCACCTCTGCCTTGTGCTTGCCTCTGTGGCCCTGTGCTGGACACTGGTGGCTCTGTTTACCACAGACTTGCTTGTGGCAGTAGTGTTTTATTTACTACTG---TTTCCCCCACCTCCTCCCAGGCCTGCAAGCTCTGAGATAGCCCAAGTTGTG-GTGTGCCTTTGCTGGTGTG--------TGGGTGGGTGAGCG--TGTGCGATGGCATGTCTTGTGGTAAACTGTTGATTTA-CTGCAGTGAGAGATAGATTAATACTTGCTTGATTTGTTAG--GGGCCATAGCATTGTAAAGGTCAGATAGTCACA-CTTGGCAGGAAAGGTGCATTTGAACCATGAAGCAGGGAAAATATTCACCTTAGCAGCTCTTCTCATCCTGATTATGCCTTCGTCTAGTGATTGCAGTGCTTAAAGAGTTCATCCCGTAAGCCTTTTACATTACTATTTGTGTGTG s rn2.chr17 12417302 681 - 93540836 ACGGGAGGAGCAGAAAAACAAAATATACAGACTCCTGAGGAAGTAGGAAAAGGGcaagaggccctggtgatggtgggtatgatattcagaggaaggaaggcagttgtctcaaggagatgtcgttttttagc---ttgggcacgtgtgtagacagatggaggtccttgggactgagctggaaaacac-tggaggaAATAAGACTCTTCTGAGCAAGCCTTTCACGGACGGTCCCACCGTCCTCAATTCCGTA---------GAGTAGAGATGCACCTCTGCCTCGTGCTTGCCCCTGTGGCCCTGTGTTGGACCCTGGTTGTTCTGCTTCTCATAGTCTTGCTTGTGGCAACGGTGTTTTATTTACTACCACCATTTTCCCCACCTCCTCCCAGGCCTGCTAGCTCCGTGATAGCGGGAGCTGTG-GTATGCCTTTGTGGGTGTG--------TGGATGAGTGAGTA--TGTGCGATTGCGTGTCCTGTGGTAAACGGTTGATTCA-CTGCAGCCAGGGGCAGATTAATGTTTGCTTG--------------------CATTATGAAGGTCAGATAGCCACA-CTTGGCAGGAAAGTTGCATTTGGACCTTGAAGCAGGCGAAGTAGTCGCCTTAGCAGCTCTTCTGATCCTGATTATGCCTTCGTCTAGTGATTGCAAGGCTTAAAGAGGTCATCCCATAAGCATTTTACATTACTATTtgtgtgtg a score=77208.000000 s hg15.chr22 14594053 944 + 49476972 AAGGGG----------------------------------------------------------------------ATTGGACCTTTGCCAGCCTCTGGCTGCATGGCAGGGTGACTGTGTCTTTGAATATCCCTGATGGAAGCTGGTCATCCTTTTGTCTTTGGGTGAATAGACTACTCAGGAAGGCAGGGATGAATGCACCCCCCACCCTGCTTTCTTGTTAATGAGTTTGCCATTTATTTTGGCAGATCTGAAATAGTATTTCAAAGGCAGTGCAGAAGCAGATGG-GGACATTACTTGTAATTGTTTAATACTGTTATGACATGACATTTGCTTACA--GAAAGAGAGGCAAGCCACCATCTTCAAGGGAGGGCATAGTCATCGACTGTGATCCTGGTGTCCATGTTGGAATATCATGGCAACTATCTCCCAGCACTGGACTTGATTACTTCTACTGCATTCCCAGTGATAGCTGAGTTGCTTAATT-----TACTTTCTTCAACACCGTTTGTGAAAGGGAAGCTAGAAAACTGCACTATGTATGGCTTAGTGCACTGAAAATTTGACGTTATCAAAGGAGCCATGATCTCGTCTTTCTCTATCCCTCTTCAAATGTTTTCTATAATTATATTCAAAGGCTCATGGGTCTTACCATGGGTCATCGAGGAAGGGCTGGTAACTCTTTAAACCACAGGTAAAATATTACAAACATCTGAAACCTGCATttttacaggtgagagaaatgaggccagaaaagttaagtgCATCATGTTGAATACAATTTTAtttggtggtcaggcagccctgggttcaaatcctggctcgattg-ctaccaattaagccacttaactccatctgagcctcaggttgtccatctgcgtaataagcagtaatagcagctatcctgtaggactactgtgagaattacaactcaggcaatgaccatgatatttcttggcacagAGGT-------GTTCACTACTTAGGCAGTGTTATTATGAtgtct-aaagtcacaaagggag s mm3.chr2 4137519 876 + 181423755 TGTCGGTCCTTGGGAGACAAGGACTTTTAAT-----------CTTGCTGGTCCCCAGTGAGATTATGAGGTATAAAATTGGGCCTGTGCAAACCTCAGAC----TGTTAGTGTGGTCGTGTGCTTAAATTTCCTGGA-GGAGATCACTTA-TGCTTTGTCTTTGGGTGAAGAGAATATACTGT-------------------------CCCATCTTCCTTGTCAAT-AGTTGAACAATTGGTTCGGGAGCTCTAAAATACCATTTCCAAAGCAATGGAGAAGCAGCCAGTGGACACTACTCGTAATTGTTTAATATTGTT-----ACCACATTTGCTTACAAGAAAAGCGAGACAACTTGTCATCCATCAGGAAGGAAATATTCCTAGGCAGCAGTCATGGAGGATGCTCTGCAGTGTCATGGCAACCATCCCCCAGCCCCAGACTTGATTACTTCCATTGTATCCCTGGTCATAGCTGAGCTGCCCCATTAACTTCACTTTCTCCCTCCTCGTTTGTGAAGGGGACGCTGGGAAGCAGCCCACCACACACT----TGCTCTGAAAGATGCACAGGATCAGAGGGATC-----CTTGCATGTCCTTCCTGTCCTCTGGATGCAGTCAATGAGAACATTCAAAATATCCTGGACTGCACCATGAGCCACCAAGAGA--------------------------------ATCATGTGCAATTAAAAC------------------AAGAAAT----CTAGGGGGAATCAGAACCTCCTGTTAGAGAGAGTGCTGTTTGGTGAT---------CTGTAGTCACAACCTGGTCCCATTGCTTACTATACA----------------TCAagcctcagttttctcttctgcaaagtgggga-acacagcaact---ttgcagaac---------aattatagctcaaacaagGATCACAGTA---CCTGGCACTGAGAAAAAAAATATTCAGTATCCA-GTACTGTAATTATTGTGTCT-AAAGTCAC-AAGAGAg s rn2.chr17 12418017 850 - 93540836 tgtTGGTCCTTGGGAGACAAGGACTTTTAATTCCTGAGCCATCTTGTTGGTCCCCAGTGTGATTCTTAGGTATAAAATTGGACCTGTGCAAACCTTAGAC----TGGTAGTGTGGTCATGTGCTTACATTTCCTACA----------TTA-CCTTTTGTCGTTGGGTGAAGCAAATACACTGT-------------------------CCCTTCTTCCTTGTTAAT-AGTTGAACAATTGCTTCCAGAGCCCTAAAATATCATTTCCAAAGCTGTGGCGAAGCAGTTGGTAAACGCTACTCGTAATTGTTTAATATCGCT-----ACCACATTTGCTTACAAGAAAAGAGAGACAACTCGCCATCAATCAGGAAGGGAATATTCATAGACAGCGATCATGGAGGATGCGCTGCAATGTCATGGCAACCATCCCCCAGCCCCAGACTTGATTGCTTACATTGCATTCCTAGTCATAGACGTGCTGCTCCATTAACTGCACTTTCTTCGACCTCGTTTGTGAAGGGGAAGCTGGGAAGCGGCCCAACATACACT----CACTATGAGAGAAGCACAAGATCAGA-------------CACATGTACTC----TCCTCTGGATGCAGCCAATGGCAGTATTCAAAGT-----------CACCATGAGCCACCAAGAAA--------------------------------ATTAT-CACACCTGAAAC------------------AAGAAAT----CTAGGGAAGATCAGGTACCTCTGTTAGAGAGAGAGCTGTTT-GCGAT---------CCATATTCACAATCTGGTTCTGTTG-TTACTATACA----------------ctaaacctcagtctcctcttctgcaaagtggggaCGCACAGAGGCT---TTGCAGAAC---------AACTACAGCTCAGACGATGCTAGCAGCG---TCTGGCACGGAAAACAA----ACTCAATAACCA-GTACTGGAATCATTGTGTCTAAAAATCAC-AAAGGAg a score=29666.000000 s hg15.chr22 14594997 318 + 49476972 tttttgagaaagctggaatgaaaacttgtttctctcaactcTGACCTTATTAGAGCACACTGTT------------GCTTGAATAAAGCAGCCCTGCAGTCTCACAGTGGAGGGTGTTTGTAACATCTGCTCA-GGCACGGTTTCATTTACTATATACCCAGAGACTAGCACTGTACAAGTTGTGGGGAGATACTCATGTGAGTTGGTGGACATTTGGTCAAATATTTTCCCTAAACCCAGGTCTCTATGGCATTCTACAGAACACTCTGCATCCTTCTAAGGGACACTCGAAGAGCA-----AATGGATTGTACAGTGAGTTACAAATAAAATGG s mm3.chr2 4138827 313 + 181423755 TTTAGGGGAAAG-TAGAGACCCAACTTAGGTCTCCTAATTCTGGTCTCACTAGATGACACTGCCTGGTTTCATTAAACTTCAATAAAACAGCCAGGAGCCTCCAAGATGAGAAA-----GTGATGTCTGATCACAGGGAAGATTCA-GAATTCTGTGTCCAGAGACTAACACTGCTCATGTTCCAGGGAAACTCTGGTATAAGTTCCTAGCCTTCAGTTTATAGATTTGCTCAGAACCAAGGTCCACAAAGCATGCCTCAG-----------TCTTCCTAAGAGAGAC----AGAGCATAGTCAGTGGGTTGTATTATGGATTAT-AATAAAATGG s rn2.chr17 12419301 303 - 93540836 TTAAGGAGAAAG-TAGAGACCCAACGTAGGTCTTCTGATTCTGGTCTCAATAGACGACACTGCCTAGCTTCATTAAACTTTAATAAATCAGCTAGGAGCCTCCACGATGAGAAA-----GTGATGTCTGATCATGAGGCAGATTCA-GAATTCTGTGCCCAGACACTAACACTGCTTGTGTTTCAAGGGAACACTGGTGTGAGTTTCTGGCCATTGGATTAAAGATTTGCCCAAAACCAAGTT----------TGTCTCAG-----------TCTTCCTAAGGGAGAC----AGAGCATAGGTTATGGACTGCATTACAGATTAT-CATTAAATGG a score=27767.000000 s hg15.chr22 14603387 394 + 49476972 ttactatggtatacgtatataatgaaataatactccctagtaagaacagaacaattgatagatgtagcaacatgaattaatctcaaaaatagtgatgctgagtgatcagaaag----------tatacataccatatgatttcatgtatttggaaataaaaactcatggatagtgactggaagtggatcagtgg-ttacctgtggaagagatggggg-gataggcaggaaaaagtga-gtagaaaa-aacacaagaaaactttggtggtaaaggtaatg----gatatgtttgctattttaatatgtt---gctggttttatagagctacaaa-tgccaagaattaccaaaatgtacaattgaagtatg-tgcagtttattgcatgtaaataaaccttttaaaaaTTAACCGATACA s mm3.chr4 38123890 395 + 152921959 TTTCAAT-TTGTACATATATGTTT-----GTTctccacaataagaatgaaatgacttacacacatagcaacatgggtacatatt--gaataattaccatggccagtcaaaaaaagtccaaattaatacacactgaatgatttcctttgcttgagtagggaaatt----agaggtaacaggaagtgac-cagtatatttgataagcacaaggtgatgatggtag--aagaggagttgatatagaagagaataggagaaAAAATTGACG-----AGTATTGACTTGATATGTTTATTAATTTACTGTATCAA-AATAGGTCTCTGAGTATATAAAATAGTATAATTAGTCAAAATGTTCAATTGTTTCATA-TTCAGTCCACGGAATGTCAATATGTTTTTAAAATTTTTACTAAGACA s rn2.chr5 61524427 387 + 191625135 TTTCAAT-TTGTACATATGCATTT-----GTTCTCCACAATAAGAATGGAATAACTGGAACACATAGAAACATCAGTACATATC--AAATAATTACCACAAGAAATCAAAATA-GTCAAAATTAATACATACTGAATGATTTAATTTGCTTTAATATGTAAATT----GGAGGTATAAAGAAGTGACACAGTGGTTTTTCTGAACATAAGGTGATGA------------GCAGATGATATAGAAAAGGACAGAAGGAAAATGTGGTG-----TGTATCGACATGATATGGTTATTAATTTAGTGTATCAATAATAGATTTCTGAAGTTATAAAGTGTTATAATTTATCAAAATGTTCAATTGCTTCATACTTTAGGTCATTAAATACAAAGAAATTTTTAAAAACTTTACTGAGACA a score=9339.000000 s hg15.chr22 14604374 154 + 49476972 AGAATATTGCT-------------ACTTTTGCAAATAGCTACAAATGATCCTGAT------CTGGA---------CACACTGAGTTGATCATAGCTTTGTAAAAGAGGATAGCATTGTAAAACTACAAAATTAGACTAATAATAAATAACATAGAATGCTTTCACTATAAGAAATAATACTa s mm3.chr4 38124600 160 + 152921959 AGGGCATTTATGTGGGAGAACTCCACATTGACAAATAGGTACAATTAACATTGATATTGCACTGAACAGGAATCGCATTCTGAGTTTA--ATAGTCT----------GTTGTCACTGACACAGTA-AAAATTACACCGG----AAGTAACGTACAA-ACTTTCAG----AAAAATAATAGAA s rn2.chr5 61525147 158 + 191625135 AAGGTAATCCTGTGGGAGGATTCCACACTGGCAAATAGGTACAGTTAACACTGATATTACACCGAACTTGCATCCCATTCTGAATTT---TTAGGAT----------GAGGTCATTGACACAGTA-AAAATTACACTGG----AAGAAATGTACAA-ACTTTCAG-----AAAATAATAGCA a score=11352.000000 s hg15.chr22 14606122 187 + 49476972 CATTTTTAAACAATCTAATACAATTTTTTAAATGGCACTTACTTTTTGTTACCTTCAACTATTGTAAAATATATTCTATTATTTATGATTAGCCCTG-TTGGAAAACAAATTTTAAAAACACTATTTAAAACCAAATAAATGGACTA----GGAGTAACTT-GCATAAAAATGACAGAAATTGCTGCTACATC--------- s mm3.chr4 38124760 164 + 152921959 CCCTTTTGTGTCATTGAA-----------------------------------TTTAACCATTGTAGATTG-ATTCCATTGTCTA-GATTGGTCTTATTTAAAATGTTAATTCAAAAACTACTATTCAAAATCAAATAACTAAAATAACAGGAAGAACTTT-TTAAAGAAATAATAGATACTGTTGAGATGGTTCTGGATCA s rn2.chr5 61525305 162 + 191625135 GCTTTTGGTATCATTGGA-----------------------------------TTTAAGCAATGTAGAATG-ATTCTATTCTTTA-GAT--GCCCCATTTGGAAAGCTAATTCAAAAAATACTATTC-AAATCAAATAACTGTAATAACAAGAAGTACTTTAATTAAGAAATAATAGACACTGCTGAGATAGTTCTGGATCA a score=51.000000 s hg15.chr22 14606309 25 + 49476972 --------------------------------TTCTAATTATTGAGATGGTATTTCT s mm3.chr4 38124924 57 + 152921959 CAGATTTAGGAATAATTTTTGATCCTAGTAATTTTTAATTCCTAAGGTAATAATTTT a score=5802.000000 s hg15.chr22 14606676 52 + 49476972 AGTCCAATCTGTATCACTGACTTTAAACACTGGATAATTGACACTCCATGTT s mm3.chr4 38126281 51 + 152921959 AGATTATACTGTATCACTAGCTTT-ATCAATGGATATGTAATACTCCCAGTT s rn2.chr5 61526670 51 + 191625135 TGACCAAATTCTATGACTAGCTTT-ATCAGTGGATAAGCAATAATCCCTGTT a score=25704.000000 s hg15.chr22 14606728 369 + 49476972 GCCTGTAAGCCTATTTCACAGCAGCTGAGTGATGTTAATAGGTACTTCTTGGAGTGCCATTTTCCTTGTAACCCTTAGATTAATTCAGATTGACTGAGTTCTGTGTCAGTGGAAATTGCCAGAATTACATCATTGTGCTTTGCATCTAGT---TTCACTTTTCCAAAAGCCTACACAGATTTCAGATGTTTAGAAAATAGCTCTTGTTTTCCTTCTG------GGTAATCTTTT------TCATGTCACCACTCTTG----TCAGCATCTGCACTGGGCAAATTTCCTAGGACCTCCCTTCTGCTTCTTTTAAAATACGAAAACAAAA-TCAATGTAGCGCAGCAAGCCAGGGAAAGTCTGCTTTGATTGACTTACGACCATAGTCACC s mm3.chr4 38126332 360 + 152921959 GTCACTGCACACA-TTTACTAAAGCTGAATAATTTTAGATTGTGTTTCCTACAGAAATATTCCCCTCATGATTCTTATTTCAATTTATATTAACTTATCTCAGAATCAA-GAAGGTCACAAAACTATTATAAATGAGTTCTAGATCCAGTAAATTTAATTTTCCAAAC-------TACA-TTAAGATATTAAGAAAATGCATTATATTCATCTTCTG--------TGATATCT-------TTTTATGATCTTTCCAGGTTTTCTGCATCTGTGCTGGGCAAGTTCCAAAAGTGATCACTTCTGCTCATATTAAAATATAAAAACAAAC-TCAACAGGAGGTGAAGAACAGAGAGGC--CTGTTTTGGCGAAATCATGGACATTATCAA- s rn2.chr5 61533200 380 + 191625135 GTCACTTTACTCA-TTCACTATAGATGAATGATCTTAGGATGTGCCTTCTACACCAATATATCCCTCATGCTACTTAATTTAATTCAAATTAAGTGATCTCAGAAACAA-GAAGATCACCAATCTTTTATGAATGGGTTCTAGATCGAGTGAATTTAATTTTTCAAACAAGTACAAACA-TTAGCACGTTAA-AAAATACTTTACATTCATCTTCtgatattttatgatctttttgtatcttttatgatctttCCAGCCATTCTGCATCTGCACTGAGAGAATCCT--AAGTGCTCACTTCTGCACACGTTAAAGTATAAAAAAACACTTTAGAAGAAGGAGAAGACCCGAGGAAA--CTGTTTTGATGTAATCATGGCCATTATcaa- a score=996.000000 s hg15.chr22 14607097 31 + 49476972 CAGCAGTTCCTTCAGAGGTGGCTTCCCAAGT s mm3.chr4 38126692 31 + 152921959 CAACAATTCACATAGATAATGCTTTCCAAAT a score=22694.000000 s hg15.chr22 14607148 117 + 49476972 TGTCCGCCTGCCTGCAGAAGTGGCTCTGAGAGCTGTTTGAGGAGAAAATGGGGGACTTTGGGCTTCAGCCCGAGGAGAACACGGTGGAGATGGAGGAGCCCCTGGGGGTCCGCAGGT s mm3.chr15 86411515 117 + 104111694 TGGCCTCCCGTGTACAGAAGTGGTTCTATGAGAGGTTTGGGGAATACATCGAGGACTTCCGCTTCCAACCAGAGGAGAACACAGTAGAGACGGAGGAGCCCCTCAGCGCCCGCAGGT s rn2.chr7 112627662 117 + 139049774 TGTCCTCCCGTGTACAGAAGTGGTTCTACGAGAGGTTTGGGGAGTACGTGGAGGACTTCCGCTTCCAGCCAGAGGAGAACACAGTAGAGACGGAGGAACCCCTCAGTGCCCGCAGGT a score=17651.000000 s hg15.chr22 14607347 105 + 49476972 CTCTGTCTGCGCGCCTTTC--TTTGCCACCACGTGTGCGGGAATGCC-TGGGGCACGACTGGGCCATCTCAGTGTTCTTGTTTCTAGCCATTCCGAGGTTACCCCTCA s mm3.chr15 86413793 108 + 104111694 CCCTAACCACGCTCCTCACATCTCACCCTCAGGTATACATGAATGCTGTGTGGCACGGCTGGGCCATCCCCATGTTCCTGTTCCTAGCAATTCTGAGGTTGTCCCTCA s rn2.chr7 112629869 108 + 139049774 TCCTAACCACATCCCTCACATTTCACCCTCAGGTATACATGAATGCTGTATGGCATGGCTGGGCCATTCCCATGTTCCTGTTCCTAGCAATTTTGAGGTTGTCCCTCA a score=9578.000000 s hg15.chr22 14607461 66 + 49476972 CAGAGGCCGGCAGACACAGTGGAGCATCCTGCAGTAGGGATCCGAAGCCGTGGAATCTCCAAAGGG s mm3.chr15 86414937 66 + 104111694 CAGGGGCTGGCGGATACAATGGAGCATTGTGCCGGAAGTGTCTGAAGCTGTGGTGAGTCCTGGGGG s rn2.chr7 112630966 61 + 139049774 TAGGGGCTGGAGGATACAATGGAGCATTGTGCCAGAAGTGTCTGAAGCTGTGGTGAGTCCT----- a score=13171.000000 s hg15.chr22 14608521 66 + 49476972 GGCTGGCGCCGCTGCCTGGTAAGCGGGGACC--AAGAGGCCCACGGCCTCCATCAGGAACCAGGTGCT s mm3.chr15 86419101 68 + 104111694 GGCTGGCGCTGCTGCCTCATTAACCGAGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTTCT s rn2.chr7 112635364 68 + 139049774 GGTTGGCGTTGCTGCCTCATTAACCGAGACCGGAAGATGCCCACGGACTACATCAGGAACGGGGTTCT a score=11598.000000 s hg15.chr22 14608589 66 + 49476972 TCCAAATCCCGGACTTCAAGGAGCAGCAATGGTGTCAAGCTGGCTGACACCAGGAACACCCAGAAG s mm3.chr15 86419969 66 + 104111694 TCCAAGTCTGGGTCATCAAAGAGGAACAAGGTGATCAAACTGATGGACATCACAGACATCCAGAAG s rn2.chr7 112636244 66 + 139049774 TCCAAGTCTGGGTCGTCAAAGAGGAACAAGGTGATCAAGCTGATGGACATCACAGATATCCAGAAG a score=52342.000000 s hg15.chr22 14608713 520 + 49476972 CCACAAACCACTGGCCTTTGCTGCCATGGTGCGCGGAGATGCGGTTCCCGAGGCCACTTTTGGCCAGGACGCCGGGATCTTATCAGCGGCAGCATCCCGCGCTGACACTCAGTATTGACTTTCCCCAGACATTGCTGGATTTTTTTCCTTTTTAAAACAATTTTGCAGTGGGAGAACAAAAAAGGGCATCCTCAGAG-CTTTTACAA-AATTCTCCTGGACC-TG--TGGTTCTATGGTGTTCACCTCTGCGTTTTACTGACCACTAATTGGCCAGAGCT--CCTAAGGCCTATAGGGGTCCCCCTGCCCC--ACCGGGTGCTTTAGACACTCCTGAGGGACATTCATGG-CTCAGGAGGATAAAGGTCCTCAGGGGCCTGCTGTGAGGAGGACATGCA----------------GCCCCTCT----GCCGCCGCGTCTTCTGCCATTCCAGCCTGGAAAGAGATACCTTGCCCTCCACCCCACAGGCCTTCATGACCTTGGGACCC--ACTCTTTAGAGGCCACGTGCGTTTCCACTGCCAAAGCAATGAC s mm3.chr15 86421618 508 + 104111694 CCACCAGCCCCTGGTGTTCGGTGCCATGGTGCACAGAGATGAAGCCTTTGAGACCATTTTCAGCCAGTATGTGAAAATCACGTCTGCAGCGGCCTCTGGCGGTGACAGCTAGTATTGACT---CTGGGGTGTTGCTGGAATCCTTTCC-------AACCGCTGGCTGGAGG---------AGCGGACATCCTCGCAGTCTTCGGCAATAATTCTCCTGGACTGTGGCTGGTTATATTGGCCTAGGCTCTGCA-------GACCA--GAAGGGCTGGAACTCACATGGAAC-----GGTGCCGGGCTGGCCCGTGCCAAGCGCATGAAGCAC-CTTCATGACCACCTGTGGACACAGGTGGGCAGAGGATCCTCTTAACCAGTCTGAAGGATGGCACACAAGACACTGGTCCTCAGGCCCTGCTAAGCACAGCCCCTCACTCT-CCTTCCCGGCCTGGGTGCAGACCCAGCCCCTGCCATCCTGAGAGGCTCCTTGGTCTTATGACCCCTGTTCTTCAGAGGC---------TTTTTCCACCAAAGCCATAGC s rn2.chr7 112637306 498 + 139049774 CCGCCAGCCCCTGGTATTCGGCGCCATGGTGCACAGAGACGAAGCCTTTGAGACCATTTTCAGCCAGTATGTGAAAATCACGTCTGCAGCAGCCTCTGGCGGTGACAGCTAGTATTGACA---CTGAGATGTTGCTGGAATCTTTTCC-------AACCATTGGCTAGAGG---------AGCAGGCGTCCTCACCATCCTCGGCAATAATTCTCCCGGACCGTGGCCGGTCCTATTGGCCTCGATTCTGCA-------GACCA--GAAGGGCTGGAACT--CATGGAGC-----GGTGCCGGGCTGGCCCGTGCTGAGCGCGTGAAGTAC-CTTCGTGACCACCTGTGGACACAGGTGGTTAA--------CGTCACCTGTTTGAAGGATGGCACACAAGACACTGGACCTCAGGCCCTGCTAAGCACAGCTCCTCACTCT-CCTTTCCGGCCTGGGTACAGACCCAGCCGCTGCTGTCCCGAGAGGCTCCTTGGTCTTATAACCCCTGTTCTCCAGAGGC---------TTTTTCCACCAAAGCCATAGC a score=18232.000000 s hg15.chr22 14610022 140 + 49476972 TGTGTCAGTGTGATT-----TCTCCATATGTCTGTGTGTCCGTCCATGTGACTATGCCAGTGTGTTCGTGTGACTGTGTGACGGTGTCTCCATGTGGTAATGTCTCCGTGTGTCTGTACATGTGAGTCTGGTCATGTGTCCACGT s mm3.chr9 87347217 143 - 124467299 TGTGGCAATGTGACTGCAAATCTATATAAATCTGTTTATCTGT--ATGTGATCCTGTGACTGTGTCCTTGTGGCCACGTGACTGTGGAACTGTGTGACTATGTGTCTATGTGTGATTATATGTTTATTTATTCGTGTGATCATGT s rn2.chr8 90212400 142 - 127756414 TATGACAATGTGACTGTAAATCTATATGT-TCTGTTTATCTGT--ATGGATTCCTGTGACTGTGTCCTTGTGGCCATGTGACTGTGGAGCTGTGTGACTATGTGTCTGTGTGTGATTATATGTTCACTTACTCATGTGACCATGC a score=12737.000000 s hg15.chr22 14610591 153 + 49476972 AACGAATAGGAGACAATTCAAATAATGGCGACCTGTTATTCTCATCTAGTTAAGTACTATTATTTTCTAACAGGAATTTGCTATTTCAAATATATTATCTGA---GATGTCTATA--TATTTATATTT--TGAGATACTATACAAATTTGAGCCAATGAC s mm3.chr4 38109718 145 + 152921959 AATTATTAGAACAGAATTTAAATACTATTGTCATGCTTTTCTTATCT------GCATGATTTTTTTCTCACAGAAATTCTATATTCCAAGTAATCAATCTAATTTTATGTTTATA-------ATATTTGGTGAGATGTTATGCAAATC--ATTCAATAAC s rn2.chr5 61502130 151 + 191625135 AATTATTAGAATGGAATTTAAATACTATTATCACAGTTTTCTTACAT------GCATGA-ATTTTTCTAACAGGAATTCCAGATTCCAAGTACACAATCTAGTTTGCTCTTGGTAATTAATTATATTTGATGCGACATTATGCAAGTC--TTTCAAAAAC a score=429.000000 s hg15.chr22 14610744 12 + 49476972 ATAGAATTTTAC s mm3.chr4 38109863 12 + 152921959 AAGAAATTATAC a score=45637.000000 s hg15.chr22 14610761 902 + 49476972 ------------------AAGAAGCTTATTCTGGGGCCATTTCTTTTGACGTTTTCTCTAAACTACTAAAGAGGCATTAAT-----------GATACAT-AAATTACATTATCTACATTT---ACAGCATTTA------AAATGTGTTCAGCATGAAATATTAGCTACAGGGGAAGCTAAATAAATTAAACATGGAATAAAGATTTGTCCTTAAATATAATCTACAAGAAGACTTTGATATTTGTTTTTCA--CAAGTGAAGCATTCTTA-TAAAGTGTCATAACCCTTTTGGGGA---AACTATGGGAAAAAATGGAGAAACTCTGAAGGGTTTTAAG----TATCTTACCTGAAGCTACAGACTCCATAACCTCTCTTTACAGGG----AGCTCCTG--CAGCCCCTACAGAAATGAGTGGCTGAGATTCTTGATTGCATAGCAGAGCTTCTCATCTAAACCCTTTCCCTTTTTAGTGTCTGTGTATCAGTATAA----AAGTTCTATAAAC-TGTAGTTACTTATTTTAATCCCAAAGCACAGTAACAATATACTTCATCCTAGGGTTGGCAGTTTCTCTGAGTGTTTTGTTTAATTATCATTATT---ATATCTGCAGGATTCCAAAGCGCCTAAAAAGTAAAATATTTTAAAAA---GGGGAAAGAGAG---------AAAGAGG-AAGAA--------------AATAAAATTAATAGCCCATTCCGTCACTGTTATTACACACCACAATACCTTTTTGTTAATCTAATTA---AAATTAGTGACATCATTTAACATTTATGTCTTCAACAAAAGTTTGGAATCCTGAAAAAGCCATTTAATTTGCTAATAAATATATTTGAATTGAATTGAAATCCTTAAGTATTACTTTAAATAAAGAACACAAGATGAATTATGATGTAGAAAATTCTATCCCTCATTGTCCAAAATCTAATAGTTAAATTGAACTTGTTAAATAATATTTTTGTc s mm3.chr4 38110089 897 + 152921959 AAAAATTATACTAGATAAAAGGAGCTTATACTAGGGCAGTCTTTTTTCAAGTTCTTTCTACATCATC--TGAGACATACATAACTTCTCCTCAGTACATGGGCTCATTTTATGAACACTTTAAACAAGAATAATAAAGGAAATATTTTCACTGTGAA--TTTTGGTACA-TGTTATCTAAGC-AATTAAACA-GTACTA----TTTTTCAT---AAATAATC----AGAA-------ATTGTTTTTTTTTAATCAAATGAAAGATTCTTTTTAAAATGTAATACTTCCTCGGAATAGTTACCTACAAAGAAGA-TGGGCAATCACTGAAAAGTCCTGTGTGAGCATCATGCTGAAGTCAAGATTCCTCAGAA------GAAGCTGAG----AGCACTTGCTCTGATCCCAGGAAACTGTGAGACAAAGATGAGTGTTTGCACC-TGGATGTTCTCATTAAAACCATCTGTCCTCT-----ACTGCCT-CCAGTATAACTACAAGTTCTATAGCCATGAACATGCTGACTAT-----CAAGACTGAAGCTGGGTGTATTTCCTCCTCTGTTATATAGAATCTCTGGGTATTTAGCTGACTTTTGAGGGCGTAAGTATTTGTTATGTTCTAAAAGGATGGTGTCTTACTGTATTTCTGAAATATGGAGAAAGAAGTCAGT-----AAAATGGCCAGTG---ACCAAGTAAGCAGCGAAACATGTGGCCTCTCCTTTCAGTGTAGCTA------ATAAAAAGTATTGGTTAATCTAAGGAAGCAGATTA--------ATTTAATATTT-TGCATT-AACCTAAACTTATAATTATCACTAAGAT-TTTAATGTCCCGGTAACCATATTTGAATT--AATATAATTCTTAGCTA--ATTTTAGTAAAA----------------CTGATAGA-AAATCTTTATCCTTAATTGGTCAAAATACACACATTTCATTGAATGTG-AAAAAAAAA---TTGTC s rn2.chr5 61502282 899 + 191625135 AGAAATTATACTATATAAA-GAAGCTTCTACTAGGGCAGTCCCTTTCCAAGTTTTTTCTAAACCATT--TGAAACATAAAT----TGTTCTCAGTACATTGGATCGTCATATTAGCACCTTAAACAAGAATAA--AAATATATATTTTCAATAAGAA--TTTTGGTACA-TGTATTCTAAGC-AATTAAATA-TTAATAAAAACTTTTCAT---AAGTAATC----ATAA---TGTAATATTTCTCTTTTCATCAAATGAAAGATTCTTAGTAAAATGTAATAATTCTTCTGAGTAGTTAACTCAAAAGAAGA-----CAGTCACTGCAAAGTCCTATG----CATCCTGCT-AAGTCTGTTTTCCTCACAA--------AGCTGTGTGACAGCACTCACTCTAGTCCTGGAGAAGTGTAAGACAAAGATGAATATTTCCACC-TGAATGGTCTCACTAAAATGCGCTATTCTCT-----GCTGCAT-CCGGGATAACTACAAGTTCTATAGACAAGAACATGCTGAATGT-----CAAGACTGAAGGTGAAAATATTTCATTCTCTGATGTGTATAATCTCTGGCCATTTACCTAACTTTTGAGCACTGAAGTGTTTGCTATGTTCT-AAAGGACATTGTACCCCTGTATTTCTAAAGCATACAGAAAGAAGGCAGTGAGTGGAAATGG-CAGTGACCACCAAATAGGCAGCAAAACATACAGCCTCTTCTTTCACTGTAGTTA------ATAGAAAGTTTTGG-TAATATAAATAAGCAGATTA--------ATTTACTATTT-CATATTCAACCTGAACTTATAATTATGACTAATAT-TTTAATTTGCTGGTAAACATACTTGAACT--ATTTGAATTCATAGCTA--ATTTTAGTTAAA-----------------TGATACA-AAATTTTTACCTTTAATTTGTCAAAATATATGCCTTTCATTGAGTGTT-TAACAAATGGTTTTGTC a score=43768.000000 s hg15.chr22 14612124 682 + 49476972 GCAGGCAGGTGAGAGAGCGaggaaggaaggaaggaagcaaagaaggaaagaaggaagggaggaagaaaAATAATGGTTTTGGTGCCAATAATCTTTGTGGAAT-TTTGCTTTAATGAAATAGA-TTTAACTAAGTAGTGAC-ATGATCTGCTTAAGTGTATTGACCCTAGCAAT-CAGAGGCATCTGAATCCCCACAATGACTTGAC--ACTTACATT--TGACAAACATTGATTCTCCTATCATACCTAAGGCATAGTCGGAATTTCAGAATTCCAACTTTCCCTATGCTATTTGAGCACATTG----------CTTAACATCTCTAAGACTCGATATTTTTACTCT----TAAGATACTAC-TAATAATAGTACATAG---TTTATATGATATAATGTGTATCAAAAGCATTATACTTTCAGG--CAGACAGCAATTTCTCAATAAATATTTGCTAATGTTTT-AGTACA-AACAGGAGAATTGGATTATGATACTTATGACACTGTTGATCCTCCTTCTAG----------------AAACATTTG-----------TTTCT------AAAACTTGTTTTCAAGTT-AGAGCACTATTTTGTGTTCAAATTGAAAATACTGTATGTTCAGATTTTTTAAAAAACAGTATTGCA--TTAATGTTTTA---ATAAAAATATTCCTAAATGAGCTTGAGCAAGGAGGATGGGGAGATAAGTAAAATAAGGCTTTGTGGCATAGGAGACATT s mm3.chr4 38110986 631 + 152921959 TCAAGCAGCCT--------------------------------------------CAGGAGTTTCAAAAATTACACT--------------------TGGAATGCTT--TTTAA--AAATTCAGTTTAATCAAATAGTAAT-ATTACCGAATTCATGGCATTCAGTCTGACAATTCAGAGGCCTCCTAACATTTATGATAGGTTCACAGATTTGCATA---AACAAATATT-ATACAAATATAATATATTCAGCTCATTTAATATTTCAGAACTCTAAATT-CCCTATGCTATTTTGCAATATTT----------CTTAATATTTAGAAGACTCCAAATCACTGCTTTAGGCAAAGATGCTGCTTGTTTCTAGTTACTAAGCTTTTAAATTCTGTA--GCACATCAAATGTTTCGTATTTTCATA--CAG--AGCACTTTGTCAATAAATATTTGCTAATCTTTTCAATTCATTAAAACACAATTGA------------GTGTTATTGTGTGTCCCCATCCTAGCATGTGAATGAAAATCAAATATATGCAAGGTGCCT-GTTCTTCTTATAAGAATCTGTTTCAATTTAAACACATTATTTTATGTATAAACTGTAATTATT-TATGCTCGCAGT-------GAAAGGAATTGAAGCTCGATTATCTAAGCATCAAACTG----TGAGTGAATTTGAGCAAGGACCA-----GGCAAAATGAAATTAGGCTATGTGTCACAAAAGAAATT s rn2.chr5 61503181 646 + 191625135 TCAAGCAGCCT--------------------------------------------TAGAAGTTTCAAAAGTTATACT--------------------TGGAAT-TTT--TTTAC--AAATCCA-TTCAATTCAATAGTCATAATTATCTAATTCATGGCATTAAGTCTAACAAGACAGAGGCCCCATAATATTTATGATGGCTTCACAGATCTGCATGGACAACAACAATT-ATCCTAAAATAACATGTTCAACCTATTTAGGGTTTCAGAATCCTAATTTGCCCTATGCAATTTAGGAACATTTAGGAATACTATATAATATTTCTGTGACTCCAAATCACTGGTTTAGACAAGGATGCTTCTTCTTACTAGTTAATAAATTCTTGGATTCTGCA--GGATATCAAATGTTTTGTATTTTCATACTCAG--AGTATTCTGTCAATAAACATTTGTTAATCTTTTCAGTTCATTAAAACACAACTAA------------GTGTTATAGTGCATACTCATCTTAGCATACGAATGAAAATGAAATGTATGCAAGGTGCCTAATTCTTCCTAGAAGAATTTGCTTCCATTT-AGCAAACTATTTTATGTATAAACTGTAATTATT-TATGCTAACAGT-------GAAAGAAATTGAAGCTGGATGATTTAAGTATCAAACTG----TGATTGAATTCGTGCAAGTATGA-----GGCAAAATGAAATTAGGCTATGCTGCACAAAAGATATT a score=15307.000000 s hg15.chr22 14612806 1171 + 49476972 TGGTGGAAATCTTTCAGCTCAACTAAGATTTGAAAAAAAAAAAGAGAATTTTTATAAAAAATGTAAAGGCAGGATTTACCCTGATGAGCTTGTGGAGAAAATACAAAGTCTAACGTAATTCAAAAGAGACTAATCAGTCAAAGTAGTTTTGAAGGAAATATCTTGAAGAGAGAGAACATAAAATGAAG--ATCAGGTATGTAATTATTTTAATAATCTATCCATGAGATAAAAAGCATTGGGATTTTTTTTATTTGTCAAAAAGGGACAATAGTTTTAAGAACCATTCTTTGTTCAGCCTAAAGAGGATTTTACATTTTGAGCCAGTGACATATTGTGCTAAGTAGGATAATATCCTAATTTGTGTCTATATCAACAATTTTGTTCTCAATAAAAACACTTTATTCACACAACTGATGATCATCTGCATTTGATTTAGTGCTGAACTGTCAAAGGGGGGCT----AATAAA-AACAAAATATTAGAGTTGCAAGTGGCATAAGTGGAAAATAATGATCATACTCATCACTACTGAAATAATAAAACAAAGCAAAAAATAAATAAGAAAAAAATTGACTACATGAACATTTGCTTCTCTCCTAAGAATCAAAACCCTTCGTTTTCTGTGGCAA---AAAAGCATCTGGGTCCATGAACCCAC----------------------------------------------------GCAAAAGTCTACTGTTTCTGGGAGATAAGAAGCAGCAAAACACATCAGCTTTCCGAGAAGGTTAAGAAACCTCTCATAGCCTACCCTATC--CCACCTGAGACCAGGCAAAGGATCActgcttctgggggagggatgcaagaaaaatacttctccatcaggagaggaacaaggattgttttggggcccaggattttgcactaatgcagagttgtgctactgtggtaaaggGTTGGAAAATCTCCATCCAGTGAC-ACAGACAAAGGTGCATTGTTCCTATGGAAGAAGAAATAAAATAGTATGTCCTTAGTGTGGGGTTGAAAACTtgcaatgatataaatcaaaggttttctaccactgaggtgggaggagg-gcaaggtatcatttcttcctcaaaaaacaacacagatatgagacagtttgattcccactagaataagagtcaggaagtgctaaaaataccccttctctgagtgtccaatgatgaaactggctcaaaaataacatgaatcatccctctgcc s mm3.chr4 38111617 1118 + 152921959 TCTTACAGACTATTCATTTTAATTAGGTT--------------GAATATTCTAATAGTAGATTTAAAGTCAGAATTGATCCTGAGGA-------------------------------CACAAGTGAGTCCAGATATTCAGAGTAATTTT-AAGGAAATTTTCGTAACAGAGGGAA--TAAAATGATATTATTATGTACGTAATTATTACAATGATCTAGACTTAAAATAAAAAGCATTAATAGTAGAATT--TTGTCAAAAAGAAAGAGTAGTCACAAGCAC--TGCTTTTCTTAGTATGAATAGAATGGTCCATATTAAAATACTAACATATACTTCTGAAAGTGTTAATATCTCAAATAGTGTCTATTTGAGCATTCTCTTTCTCAGTAAAAGCATTTCATCCACATCA-TGATAGCTATCTACTTCTGATCAAGCACAAAAGCCCAAATTGGAAATTCTTAAGTAAATAACTTAATACTGGAGTTGGGATGGACACAAATTGAAAATCATGATCTAATTAGCCACAGC---AAT-ATAGAAAGAAGAAAAGTGAAAGCCAAAAGTATGTTACTAACATGAACATTTCCTTCTCTCCTAGTAGTTAAG------CATTTAAAATGATAAAGTAAGAACACATACATGCACACACCCACCCCACCCCACCACCATACACACACAGCTGTGGGTGTGCTTTCAAGAATTGTGACAAAAGTCTATTATTTCAGGAATCAGAGTAGGTGAAAAATTAATCACCCTTTAATTATGGTTAGAAAAT--------ACTCACCCCAACCACCACCCAAGATTAAGCACTTTTGCACATGTGTTGACACAGAGAGGCAGGA---------------CAGGA----AACATGTCTTGTACTGGTAAC----------------TGTAGAA-AATTCTGCCCTTGAATAGAGAAGCAAATTTTCCTGCCAATAGCTGGAGACAAAGATGTGTTTCTTCTATGGAATGTG-AATGAAGTGATTTACACATAATTCTGGATTAAAA---TACAA-AATACAAATCATATGCTTTCAACATCTTATAGGTAGGGAGATACAAGGTAATAATTCTTTCCCCAAGCCCAATGCATAAATTTGGTAATATGGCTCTCA-TAAGGTAAGAG------ATCATAATAAAAGACCTATTTCTAAATTCATCAAAGTAAAACTGTCTCAGAAATATCAGACACTATTTTGCTGTC a score=13152.000000 s hg15.chr22 14616649 87 + 49476972 TGAGAATCATTACTCTGAAAAATTGATTTTGTTAGAATGATGGAAATTTAAATATTTGAAAGTAAAAACACATGCCACCTTTTTCCT s mm3.chr7 25506002 87 - 134401573 TGAAAATAATTATTCTGAAAGATTAATTGTATTTTAATGATGGAAACAGAAGTAATTAAAGGGATAAACAGATGTCACCCGCCTTCT s rn2.chr1 106447113 83 - 276301343 TGAAAGTAATTATTCTGACAGATTA----TGTTTTAATGATGGAAATGGAAGTAATTAAAGTGATAAACAGATGTCATCTGCCTTCT a score=82588.000000 s hg15.chr22 14616736 856 + 49476972 AGAACTCTGCAAGGCAAATTGCTGTAAGACAGGCAGAGGAA-GCACAATATATATACATATCCAAAATATAATTTGCAGTGAAATAAATGAAAGCAAATTATAAATAAACTTACCTGATTTTACAAACTAACCTTTAAAGG------GATTTCTACTAATTTTTCTATTG---CCTGCATTGCCCTTTCTTCTAGATCCAATTTATATTTTTGTACTTCACCAATGTGTCTCCACCATTGTGTAGTTTCCATATGTTTTTTAAGATTTAATATTACTTTTTCCAACATCTTTTTA---TCCTCAAGTTTTTTATATTCCTGTTGTATT-TTTTTATAGATAATAACTCCTGTTGAA-TAACT--TTTTAGTCAAATAGAC----ATATTTTGAAGATACAGCTTTCAGCTTTGCTGTAAGATCATCGAACTACATTAATAAAATAATATAGCTTGATAATG----AAGTAGGCTGAGAATAATCTCATACAAAACCAATAACAAATTTTGAAATACATTTACTTGCAATAAAATGTTATCTATAATGTAGATTCTTTAAATGTT--AACCCGTACTCAGAAATTCAAGAACAAAGTAAAAGCCACCATGAGTCACAAACAT---ATATTCTTTACTCTCATCATCTTTGCCACAGAACTTTTGCACTTGATCTTACTGTTGTTTTTCTGATAATTTGTGTTTT--------TTCCTTTCTTAAATGGCTCTAAGTTAACTCTTATTAGAAAGTTTCAAACCCCCTTCTCTCATCATCATGCCCCAAAATTTGTCAAAAAAAAGTTTCAGAGATATTATATTGAGTTATTTAGGCCAAAGGCAATAAATGGCTCTT---------ACAATAAGACTTTGAAAATAATGTAATACTCTACAA----TAg s mm3.chr3 35873002 788 + 160674399 AAAAGTTTATAAAGCAGCTTGCAACACGAGAAGTAGAAGCATACATAAAATGTGCACACA--CAAAATATTACTTGCAGTGAAAAGAATGAAGACATATTGCATAT-------------------AATTAACCTGCAAGAATAGGTTGACTTGTTTTAACTTTCCCACCAATTCCTGCTTTGTCTTCTCTTCGATTTCCCATTTATACTGTTCTATTTGGCCAC----ACTCTATCATATTCC--TTTTCATGTGACTTCTAAGGCTAACTACTTCTTGTTCTAACTTCTTTTTATGCTTCTTTAGTTTTTCACATTTCCTTTGTATTGTTCTCATAGACAGTAACTCCCGCCGAAGCAGCTGATTTTGTTCATAGAGATGTAGATATTTGGCAGATGCAGATTCCAATTTTTCAGTAAGATCATCACTCTGTAGACATAAAATAATATACCTTGGTGCTAAGGAAAGTAAGTTGACAATAGTCTAACAGACTACAAGCAACAAAATCTGACACAATTTTAATTGTAACAAAGTAACAAGTCTATTT--GATCTTTACAATGTTGTTTTCATTACTCAGAAAGAC---AACAAGGAAAAATTCACCAAGAGTCACAGA-ACACAGTATTGATT------ATCACCTTTGTTACATAAGTTTTA--------------------TTTTCGATAGTTTT--------------GTCACCTCTTAGA-------AATACACCTCTTAT-----AGTATCTATCTTCACTTT---------------------------TAAAGAAGACATGAGGATATCATATGGCATTATATAGGTCCTACA-GATAATTGGCTCCCAGAAGAAAGAAAATAAGACATGTAAAATAA--TAATA----ATAAGTGTTAG s rn2.chr2 118496948 782 + 246339213 ACA--TTTATAAAGCAGCTTGTAACATGAGAAGTAGAAGCATGCATAAAATGTGCACACA--CTGACTATTATTTGCAGTGAAAAGAATGAAGACATATTGCATAT-------------------AATTAACCTGCAAGAATAGGTTGACTTGTTTTAATTTTTCCACCAAATCCTGCTTTGTCTTCTCTTCGATTTCCCACTTATACTGTTCTATTTGACCAC----ACTCTATCATATGCT--GCTCCATGTGACTTCTGAGGTTAGCTATTTCTTGTTCTAACTTCTTTTTATGCTTCTTTAATTTTTCATATTTCCTTTGTATCATTTTCATAGAGAGTAACTCCCGCTGGAGCAGCTGATTTTGCTTATAGAGATGTAGACATTTGGACGTTGCAGTTTCCAGTTTTGCAGTAAGATCATCACTCTGTAGACATAAAATAATACACCTTGGTACTGAGGAAAGTGAGTTGACAATAGTCTAACGGAATACAAGTAACAAAATCTGACACAATTTTAGTTGCAACAAAGTATCGTGTCTACTT--GATACTTACGATGTT------ATTACTCAGAAAGTC---AACAAGAAAAAA-TCACCAAGAGTCGCAGA-AC---GTACTCATT---------ACCTTTGTTACATAAGTGTTA-------------------TTTTTCTATAGTTTG-GTCTTAACATGAAGTCACCCCTTAGA-------AGAAGGCCTCTAAC-----AGTATCTATCTTCACTTT---------------------------AAAAGAAGACATGAAGATATCAT-TAGCATTATATAGGTCCTACA-AATAATTGGCTCCCAGGAAAAGGAAAATAAGGCATGCAAAAGAA--TAATA----ATGA----TAG a score=14523.000000 s hg15.chr22 14617899 99 + 49476972 TAATCCTATAAATAAGGATTCTAATGCCACAAGCCT-TTCCATAGGCTGTAAATGTTTT---ATGCTAATTTGAATTGCATTTTAAAAAGTAATGATTCTTGG s mm3.chr3 35873791 98 + 160674399 TAATCTTATAACTAGGGATTCTAATGTCAATAATCC-TTTCCCGAACTGCAAATGTTTGATAAT----ATTTGAATTGAATTCTAAGATGTAATGAGTCTCAG s rn2.chr2 118497731 96 + 246339213 TAATCATATAACTAAAGGTTCTAATGGTAATAATCCTTTTCCTGAACTGCAAATGTTTG---AT----ATTTGAATTGAATTCTAAGATGTAACGGTTCTCAG a score=4578.000000 s hg15.chr22 14620394 45 + 49476972 TTCAACCCTAGAGTTGGGCCACAGTGCCATCTGCTTTTCCT---------------------------------------AAGG s mm3.chr6 83976037 45 + 149950539 TTTGACACCAAAGTTAGTCTACAATGCCATCTTATTTTCAT---------------------------------------AAGG s rn2.chr4 113409256 84 + 183307734 TTTGGCACCAAAGCTAGTCTACAATGCCATTTTATTTTCATTCCTTGAACGTCAGCAAGAACAAGAACCACATATCTGGCAATG a score=2075.000000 s hg15.chr22 14621389 39 + 49476972 CTGCTTGTTTCCTCTCTGTGTCTCCATTTGTAGGACAGT s mm3.chr13 38919043 39 - 116242670 CTGCTTGCCCACTCTCAGCACCTCTATTCTTAGGACAGT a score=6455.000000 s hg15.chr22 14623010 42 + 49476972 ACTTCCTTGTGTGGCTGAGGTGCTGGATGCTCT----GCCTGCTCT s mm3.chr5 140580197 46 + 149719773 ACCTTCTTGTGTTGCTAAAGCGATGGATACTCTCCCAGCCTGCTCT s rn2.chr12 34077830 46 - 46874691 CCCTTCTTCTGGTACTAAACTGTTGGATGCTCTGCCAGCCTGCCCT a score=11562.000000 s hg15.chr22 14627029 56 + 49476972 CCAAGAGGCAGACCACAGGCCGTCTTGAGGAGGACTTTATGTTCAAGTGCAGAAAG s mm3.chr13 5882863 56 - 116242670 CTGAGAAGCAGGCCACCGGGCGCTTCGAAGAGGACTTCATCTCCAAACGCAGGAAG s rn2.chr2 204951418 56 - 246339213 CCGAGAAGCAGGCCACCGGGCGCTTCGAGGAGGACTTCATCTCCAAGCGCAGGAAG a score=45804.000000 s hg15.chr22 14634405 303 + 49476972 GTTTCATGGAACTTAATTTTTAGCCTGTTGATTTTACTGTCTACATTAG--ATTTGTTGAGAAAGATTC----TGTAATCTTTTAGGTTAGACAAATGAGAATTCATTGTCTTCTGTAAATAAACCTGTTCATGTCTTGTTCTCTGGAAAG--------AAGTCTCTTTCAGCTCTCTGACTTTGGTCACAATCATGTAGAGCAGTAGCCAGTCTACAATGATGTAATTGAATTTCCATTTCCAGTGTTTCGTCGTTGTGTCTTACATTGTCCAGTTCAGAACTGAGCATTTTATTCTCAGTTGTCAACATGCTAAG s mm3.chr6 119203353 317 + 149950539 GTGTGATGAAACTCAATTTCTAGGCTATTCAACTTCCTTTCAGTTTTAGAAAGCTGTTGGGAGAGAACCTCATTGTTATCTCGGAGGTTAGACATATCGAAATTCATCTTGTCTTTCACACGAAACCACTCATCTCTCGCTCTCTGGAAAGCAATTTCTAGGTCTCTTTTTGCTGTCTGAATTTCAGCGTGATCATGCAGAGCAGAAGCCAGCCTAGATCGGAACGACTCAACGTCTGTTTCCAGTCTCTCCTTATTTTGTTTTTCGTTGTCCAGCTTAGAACTCAGCATTGTGTTCTCAGCTTTAAGACTATTAAG s rn2.chr4 151582765 317 + 183307734 GTGTGATGAAACTCGGTTTCGAGGCTATTCAACTTTCTTTCAGTTTTAGAAAGCTGTTGGGAGAGGACCTCGTTGTTATCCCTGAGGTTAGACATATCAAAATTCATCTTGTCCTTCAAACGAAACCACTCATCTTTTGCTCTCTGGAAAGCAGTTTCTAGGTCTCTTTTTGCTGTCTGGATTTCAGCGTGCTCATGCAGTGCAGAAGCCAGTCTAGACCGGAATGACTCGACGTCAGTCTCCAGTCGCTCCTTGCTTTGTTTCTCGTTGTCCAGCCTGGAACTCAGCATCGCGTTCTCAGTTTTAAGATTGTTAAG a score=1767.000000 s hg15.chr22 14634708 11 + 49476972 CTGTCCACTGT s mm3.chrX 74107725 11 + 149996094 CTTTTCACTGA s rn2.chrX 78531054 11 + 133900917 CTTTTCATTGA a score=1443.000000 s hg15.chr22 14634719 37 + 49476972 ACAGAAATACTGTTTTTGTTAATGCTTCCTCATTGAA s mm3.chrX 17672860 32 - 149996094 ACAGAAACATCCTCTCT-----TTTTTGTTGGTTTGT s rn2.chrX 107325230 32 - 133900917 acagagaaaccctgtct-----TATTTGTCTGTCTGT a score=316314.000000 s hg15.chr22 14634756 1728 + 49476972 TTTTTTTTAAGGTGTGCACTTTTTTCCAACTCTCCTTAAGTCAGAGTACAGGTAAGCCCTGGCTG--------CCTCCAGCCACTCTCAGGGAGACCAAAAGCCTTCATACACCCCAAGTTGGGGT-ACAAA--AAAGGGGGGCCGCGAAGGCTGATCATTCTAAA---TAAAACAAAATTAAAAAGTATTTAGGCA-AAGATTCAAAAAA-----TTTTGCATTACGTAATTTGCATGAAAGCAATGCCATCACC-TCCCCTGTGTGAA-TTAGGGAGAGGACTGGGCCATTCTCCTTAGAGAGAAGTGGGGTGGCTTTTAGAAGGGCAAGGGGCTTCCTGAAACAATGCATCTCACA-ATATTTGGAATGACTATT-----GAAAAG----------AAAAA--CAATGTACGATCAAAGTCCTCAGCCACATTGTAGAACTTTGGGGGAAGCTCACTCCAACCAACTGTTCTCGCCTTCACCATTCCAGTTTTTAAATCCTGAGTCAA----GCCAATAAAAAACAAAACAA-----------------------AAAATGAAAT---------AAGAAAACAAT--TAAAGCCATACCAA-----TCTCA-TGTGGCTTTCTGCG-AAGTTTGGTTTTGTC-AAGAAAGGGTGTAATGC--AACTAAGTCAGCGTCCACCTAGAAGCATTTGCGGTGGACAATGGAGGGGCCTGACTCA---TACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGCGAGGCCAGGATGGAGCCACCGACCCACACGGAGTACTTGCGCTTGGGAGGAGCAACAATCTTGATCTTCATCGTGCTAGGCGCTAGGGCAGCGATCTCCTTCTGCATCCTGTGGGCAATGCCAGGGTACATGGTGGTGCCACCAGATAGCACTGTGTTGGTGTACAGGTCTTTGTGGATGTCCACATCAGACTTCATGATAGAGTTGAAGGTAGTTTCGTGGATGCCACAGGATTCCATGCCCAGGAAGCAAGGCTGGAAGAGCACCTCGGGGCAGCGGAACCGCTCGTTGCTAATGGTGATGACCTGGCCGTTGGGCAGCTCATAGCTGTTCTCTAGGGAGGAGCTGGAGGCCGCTGTGGCC-ATCTCCTGCTCGAAGTCCAGGGCAACATAGCACAGCTTCTCTGTGATGTCACGCACGATTTCCTGCTCGGCCATGGTGGTGAACCTATAGCCACGCTCGGTGAGGATCTTCATGAGGTAGTCAGTCAGTTCCCGGCCATCCAGGTCTAGGCGCAGGGTGGCATGGGGGAGGGCA--TTCCCCTCATAGATGGGCACAGTGTGGGTGACCCCGTCACCAGAGTCCATCACAATGCCAGTAGTACGGCCAGAGGTGTACAAGGACAGCACGGCTTGGATGGCCACGTACATGGCTGGGGTGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCACGGTTGGCCTTGGGGTTCAGGGGTGCCTCGGTCAGCAGGATGGGGTGCTCCTCGGGAGCCACACGCAGCTCATTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCCATGGGGTACTTCAGGGTCAGGATGCCTCTCTTGCTCTGGGCCTCATTGCCCACATAGGACTCCATCTGACGCATGCCCCCCATCATGTTCTGGTGCCTGGGGCACCCCACGATGGAAGGGAAGACAGCCC-----GGGGGGCATCGTCACCTGCAAAGCCGGCCTTGCACATGCCAGAGCCGTTGTCAATGACGAGCACGGCAGTATCATCATCCATGGTGAGCT s mm3.chr16 61294075 1725 - 98986639 TTTTTGGTAAGGTGTGCACTTTTATTAAAATGGTCTCAAGTCAGTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACTCACTCCCAGAGAGACC-AAAGCCTTCATACA--TCAAGTTGGGGGGACAAA--AAAGGGGGGCCACACTAGCTGACCATTCAGAAATTAAAAACAAAA--ATGAAGTATTAAGGCAGAAGATTTAAAAAAT----TTTTGCAGTACATAATTTACACAGAAGCAATGCTGTCACCTTCCCCGGGGTGGACTCAGGGCGTGGACTCGGCCATCCTCTTCTTAG-GAGTGGGGGTGGCTTTTGGGAGGGTGAGGGACTTCCTGTAACCACTTATTTCATGGATACTTGGGATGACTATT-----AAAAAAAGACAAAATCAAAAAAACAATGTACAATCAAAGTCCTCAGCCACATTGTAGAACTTTGGGGGATGTTTGCTTCAACCGACTGCCTTCGCCTTCACCGTTCCAGTTTTTAAATCCTGAGTCAAAAGCGCCAAAACAAAACAAAA----------AACCTTT---------TAAAAAAAAT---------TAAAAAACAAAAACAAAGCCATGCCAATGTTGTCTCTCTTTTTTTTTCTGCACAAGTTAGGTTTTGTCAAAGAAAGGGTGTAAAAC-------------AGTCCGCCTAGAAGCATTTGCGGTGCACGATGGAGGGGCCAGACTCATCCTACTCCTGCTTGCTGAGCCG-ATCTGCTGGAAGGTGGACAGTGAGGCCAGGATGGAGCCATCGATCCACACAGAGTACTTGCGCTCAGGAGGAGCAATGATCTTGATCTTCATGGTGCTAGGAGCCAGAGCAGTAATCTCCTTCTGCATCCTGTCAGCAATGCCTGGGTACATGGTGGTATCACCAGACAGCACTGTGTTGGCATAGAGATCTT----GGTGTCAACGTCACACTTCATGATGGAATTGAATGTAGTTTCGTGGATGCCACAGGATTCCATACCCAAGAAGGAAGGCTGGAAAAGAGCCTCAGGGTATCGGAACCGCTCATTGCCAATAGTGATGACCTGGCCGTCAGGCAGCTCATAGCTCTTCTCCAGGGAAGAAGAGGATGCGGCCGTGGCC-ATCTCCTGCTCGAAGTCTAGGGCAACATAGCACAGCTTCTCTTTGATGTCACGCACGATTTCCCTCTCAGCTGTGGTGGTGAAGCTGTAGCCACGCTCAGTCAGGATCTTCATGAGGTAGTCTGTCAGGTCCCGGCCAGCCAGGTCCAGACGCAGGATGGCGTGAGGGAGAGAGCATAGCCCTCGTAGATGGGCACAGTGTGGGTGACCCCATCTCCGGAGTCCATCACAATGCCAGTGGTACGACCAGAGGCATACAGGGACAGCACAGCCTGGATGGCTACAGACATGGCTGGGGTATTG---GTCTCAAACATGATCTGGGTCATCTTTTCACTGTTGGCCTTAGGG------GG-GCCTTGGTGAGCAGCACAGGG-------------CCACACGCAGCTCACTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTTCCAGTTGGTGACAATGCCATGGTCAATGGGGTACTTCAGGGTCAGGATGCCTCTCTTGCTCTGGGCCTCGTCGCCCATGCAGGAGTCCTTCTGACCCATACCCACCATCACACCCTGGTGCCTAGGGCAGCCCACGATGGAGGGGAAGACGGCCCGGGGAGGGGAGCATTGTCGCCTGCGAAGCC---------------GGAGCCGTTGTCGACAACGAGCGCAGCGGCATCGTCATCCATGGCGAACT s rn2.chrX 107325266 1775 - 133900917 TTGTTTGTAAGGTGTGCTCTTTTATTAAAATGGTCGCATGTCAGTGTATAGGTCAGCCCTGGCTGCCACAACACCTCAACCCACTCCCAGGGAAACC-AAAGCCTTCATACA--TCAAGTTGGGGG-ACAAATAAAAAGGGGGCCACGATGGCTGACCATTCAGAAATTAAAAACAAAA--ATGAAGTATTAAAGCTGAAGATTTAAAAAAAAGAACTTTTCAGTACATAATTTACACAGAAGCAATGCTGTCACCTTCCCCGGTGTGGACTCAGGGCATGGACATGGTCATCCTCCCCTT------------------TTGGGTGGGTGAGGGACTTCCTGTAACCATCTATGTCATAGATACTTGGAGTGATTATTTTTTAAAAGAAGAACAAAACCAAAAA--CAATGTACAATCAAAGTCCTCAGCCACATTGTAGAACTTTGGGGGATGTTTGCTCCAGCTGACTGCTGTCGCCTTCACTGTTCGAGTTTTTAAATAATGACTCAAAAGCGCcaaaacaaaacaaaacaatacaaaaAACCTTTAAATTTTTTTAAAAAGAACAACAACAAATAAAAAACAAA--TAAAGCCTTGCCAATGTTGTCTCG-TATTTTTTTCTGCACAAGTTAAGTTTTGCCAAAGAAAAGGTGTAAAACGCAACTCAGTTACAGTCCGCCTAGAAGCAAATGCGGTGCACTATGGAAGGG----ACTCATGGTACACCTGCTTGCTGATCCACGTCTGCTGGAAGGTGGATGGTGAGGCCAGGATGGAGCCACCGATACACACACAGTACTTGCGCTTAGGAGGAGCAATGATCTCAATCTTCATGGTACCAGCAACCAGAGCAGTAATCTCATTCTGCATCCTGTCAGCAATGCCTGGATACACAGTGGTGCCACCAGACAGCATTGTGTTGTCATAGAGGTCTTTACGGATGTCACCTTCACACTTCATGATGGAATTGAATGTAGTTTCATGGATGCCACAGGATTCCACACCCAGGAAGGAAGGCTGGAAAAGAGCCTCGGGGCATCGGAACTGCTCATTG-------TGATGACCTGGCTGTCAGGCAGCTCAGAGCTCCTCTCCAAGGAGGAAGAGGATGCGGCAGTGGCCCATCTCTTGCTTGAAATCTAGGGCAACATAGCACAAATTCTCTTTGATGTCACGCACAATTTCCCTCTCAGTTGTGGTG---AAGCTGTAGCCGCATTCGGTCAGGATCTTCATGATGTAGTCTGTCAGGTCCCAGCCAGCCAGGTCCAAATGCAGGATGGCATGAGGGAGATGG--TAGCCCTCATAGATGGACACAGTGTGGGTGATCCTATCTCAGGACTCCATCACAATGCGAATGGTACGACCAGAGGCACACAGGGACAGCACAGCCTGGTTGACTACATACATGGCTGGGGTGTTGAAAGTCTCAAACATGATCTGGGTCATCTTTTCATTGTTGGCCTTAGGGTTCAGGAG-GCCTAGGTGAGCAACACAGGGTGCTCCTTGGGGGCCACACGCAGCTCATTGTAGAATGTGTGGTGCCAGATCTTCTCCATATCGTCCCAGCTGGTGGCAATGCTGTGTTCAATAGGGTGTTTCAGGATCAGGATGCCTCTCTTGCTCTGAACCTCATCGCCCAAGTAGCAGTCCTTCTGACCCATACCCACTATCATACCCTGGTGCCTAGGGCAGCCCACCATGGAGGGAAGGATGGCC------GGGTGGAATCGTCGCCCGTGAAGCCTGCCTTGCACATGCTGGAGCCATTGTTGATGACAAGCACAGCAGTATTGTCATCCATGGTGAATT a score=48076.000000 s hg15.chr22 14636510 477 + 49476972 TTATCATTCTTTTTTTCCACACTTTCAATTTCCTCCAAATATTTCTTTTCTCTTAGCTGGCTCTGATGTTTCATTATGTCTAGTTCCAGTCTTAGCATGACAATTTCTTCCTGCAACGTACTATTTTCATGCAAGAGGTCTTTTTCTTTCTTATAACTAAGAGAAAGCTAAGTAAACAAAGGGAACTTTTAGTTAGCACTCAATAGATTGATATATCATGATTTCTTCTGAAATTAAAAAATAACATCTGTATTTGTATAATGAAAGAATCCCCATAGTGGATATTTAACTGGAAAAAACTGGACAAAACTCCAAACCTAGCAGAGTGTAAATTCCTCTAGTGATTTATTTTTCATAGTCTTTAAATAAAGATTTAAACTTTTAGGAATCTGCTCCTGAATTCCTAAAAGTTTAAATATTTATTTAAAGACTATGAA--AAATAAATCACTAGAGGA----TTTTTAAGAATCTCAGAATTAA s mm3.chr6 119203737 402 + 149950539 TTGTCATTCTTCTCATTTGCAATCTTAATATCCTCAAGATACCTCTTTTCCTTCTCCTGGTTATGGCTTTTTATTGTGTCCATTTCCAGTCGTAACACAGCAACTTCATCCTGCAGCCTCTGGTTTTTATGCAATAGATCTTTTTCTTTTTCATGACTAACAGAAACCTAAGAAAGGAAAGAG-ACATTTAGCCAGCAGTATA-----TGAAATGTCAAAATCTCATATAGAATTCAAGAACAGCATGT--AGTTCTTCGAACTCAGCAC-----TGAGACACATATAAC-------CACTAGAAAAA------------------------------------------------------TAAACTAATTTCTGAGCTTATAGTAGTAT-------AATTCCTAAAAGTTCATAAATGTAATAGAGGACAATGACTTTATGAAATTAAGAGAGAAATACTTCGTAAGAAACTTAGCACTAG s rn2.chr4 151583149 404 + 183307734 TTATCATTTTTCTCATTTGCAATCTTAATATCCTCAAGATACTTCCTTTCCTTCTCCAGGTTATGGTTTTTTATTGTGTCCATTTCCAGTTTTAACATGGCAACTTCATCCTGCAGCCTCTGGTTTTTATGCAATAGATCTTTTTCTTTTTCATGACTAAGAGAAGCCTACGTAAGCAAAGAG-ACACTTAACTAGCAGTCTA-----TGAAATGTCACAGTCTCGCACAGAATCTAAGGACAGTGTGCAAAGTTCTTCAACCTAAGTGT-----TGAAACATATATAAC-------AACTAGAAAAA------------------------------------------------------TAAACTAATTTCTGAGCTTATAAAAATAT-------AATTCCTAAAAGTTCACACACATAATCGAAGACAATGACTTTATGAAATTGAGAGAGAAATACTATTTAAGAAACTTAGCACTGg a score=4477.000000 s hg15.chr22 14636987 25 + 49476972 AAAAGCCTTTCTCTGAGTTACAAAA----------- s mm3.chr6 119204139 36 + 149950539 AAAAGCCGTTCTCTGAATTACAACAGGCTTCAGGTC s rn2.chr4 151583671 36 + 183307734 AAAAGCCTTTCTCTAAACTACAACGGGCTTCAGGCA a score=15161.000000 s hg15.chr22 14637012 255 + 49476972 -----AACCCAGAGGCATA---AAATATAAG---ATTAATACATTTGACTATATTT-------------------------TTAAGATTAGGTTTATACTCTGATATCTAACCTATCAACCACACCATCCTAAGAGCCTTAGCTATGCATATATTTGGA-----CAGAAGCAATTTCTCAAAGTTCTTTAAGTTTCTTTTACTGAAGAACGTTTTACCGATATTCTACATTTCTAATATT-TTTATACTCAGTTATAAGAATTATATTTATTCATAACT--TAAATCTAAGCACTGTAC s mm3.chr6 119204175 227 + 149950539 CCATTAACCCCTACACACATGCACACATGTGCCCACAAACAAATATGAACACACAA-------------------------------TCAGGTTTACACT-----------GATAACAATCAGTCTATAATAAGACCCTTAGTTCTTT---CATTTACA-----CAGAAGAAATTTCCCAAAGCT--TTTAGTTCTTTTTATCCAGAAA----------------GACTTTTCTAACACTATTTTTA----GTCACTAAAATCACATTTATTGATAAATGCTAAAAATAAGCACTAAAC s rn2.chr4 151583957 274 + 183307734 ccatcaacctctacatgtatgcacacaTGTGCTCAGAAACAATTGTGAACATACAAACATACCACACACACATATGCAGAAAAAAAATCAGGCTTATACTTTAGT------GTAAATAATCAGTCTGCATTAAGACCCTTAGTTCTGT---CAATGACTAATGTCAGGAGGAATTTTCTGAAGCTCTTTTAGTTCTTTTTATCCAGAAG----------------GACTATTCTAACACTATTTGTAGTCTGTCACTGAAACCCCATTTACTGATAAATGCTAAGAATAAGCACTAGAT a score=37016.000000 s hg15.chr22 14637670 412 + 49476972 TATATCATGGCATGTCATTGTTTTC-AAACCTCTTTACATTGAAATGAGAAATTACTTGGAGCAAAGTGTTCCTCTCCACAAAAGTAAGGATGATGACATCCACAATGTGGCCTCTGACCCAACTATACAT-TTCCTACTTTCCTATCAGTGAAAACCATCAATTGACTTCTCTATTAACAT--------------------TTTTTAACAAAACTAATGTCCAAAAACTAGAAAATTTGTTTTTAGTAGCAAAACTTAGTTTTGAT-ATGGAAAGATCATCAATTCTTATG-AAAAATA-------------------------------TCAAATGC---------TTCT----------------------------CCTTTGGATTGAGGCCATTGTGAAGGTCACTACTCGACTGTTGCAGGCAAATGGAGTTGAATTAAGAACATGGC---------TTTCTCCTATATGTACAGATA---TAGA------TACATGACAAAGGATATATAGAATA s mm3.chr3 35885169 481 + 160674399 TACAGTAGAGCCCATCCTTGCTGTCAAAAGCTCTTTGTGGTGACATAAAGAA----TCGTAGCAAACTGCTACTCTTCTGGAATGGAAGGA-AATGACATCTAAAATATGATCTCTG--TTGCCTGTATTT-TCCCCCTCTGTCAAATGTTGAAACAAATAACCAGATGTCTCCATTAGCAG-AAATGGA--------------GAAAGCAGAAATCATGACGGGAAGC-AGATGATATATTGTTAGTAGCGAGGCTT--TTGTGACAACAGAAAG---ATGTATTCTTACG-GGAAATAACCAAAACCCTATCTTCAGAGGAGGCCAGTATCAAAGGCAATGAATTCTTCTATGCTG-TCTAAAGCAGGACTTGCATGCCATTTGGA-TGAGGTCACTGTGAATGTCATCACT---ATGTTGTAGACAAATGGACTTGAATT---AACATTACTGACTTTTATTTATCAAAGTTGCTAAAAAA---AAGAGCTATTTCCACATCAAAGTATGTGTATTATG s rn2.chr2 118510763 488 + 246339213 TACAATAGAGTCCATCTTTGTTGTCCAAAGCTCTTTGAAGTGAAATAAAGAA----TTGTAGCAAACTGTTACTCTTCTGGAAAGGAAGGA-AATGACATCTAAAATCTGATCTCTG--TTGTCTGTGTTTCCCCCCCTTTATCAAATGTTGAAACAAATAAACAAATGTCTCCATTAGCAGCAGATGGAGAGAGCGAAAATCTGAGAGCGGAAATCATGCCCCAAAGC-AGATGATACATTGTTACTAGCAAGGCTT--TTGTGACAACAGAAAG---ATACATTTTTTTATGGAAATAACCCAAACCCTTTCTTCAGAGGAAGCCAGTGTCAAAAGT-----ATTATTCTATGCTGTTTTAAAGCAGGACTTGCATGGCATTTGGA-TGATGTCACTGTGAATGTCATCACT---ATGCCATAGACAAATGGACTTGAATT---AACATTCC---------TTTATCCAAGTTGCTAAAAAGCACAAAAGCTCTTCCCACATTGAAGTATGTGTATCACG a score=28274.000000 s hg15.chr22 14638082 220 + 49476972 TATACACACATATATATGACTTAAAAATCCTTT--GTAT------ATCCAAAATACATAGTTTTTAAAAAATATATACACATATAAA-------AACATTTGAAAAT---AACTAAATACCTCAGAATTCATTTTC-----AGCCACTTCTATCTGCTTTTCTTCATGAA---------TCAGAATCTCATCTTGTAATATTCCAGTGTTCTGTTCTTCAGAAAGTTGCTTCTGAGTATCATTTTGTTCATC s mm3.chr6 119204845 240 + 149950539 TATGTATGCACACATATGGTTCAGAAATCCTCTATGTGTTCTGTGGTCTATAAGGC-TGGTTCTGAAA--ATATGTAAATACATAAA--------TCTTTTGAAAGCTA-CAGAAAATACCTCAGAAGTCATTTTCTTCTGCGTCATTTCTATCTCCTTTTGCTTGCAGAGGTGACTTGCAAGAATCCCATCTTGTAACATTCTGGCATTCTGTTCTCGGGAGAGCTGCCTCTGAGTCTCATTTCGTTCCTC s rn2.chr4 151584420 246 + 183307734 TATGTATGCTCACACATGGCTCAGAAACCCTCT--GTTTTCTGTGCTCCGTAAGGC-TGGCTCTGGAA---TGCGTAAGTACATGAACGCCCGCATCTGTTGGAAACTGGAAGGAAGTACCTCGGAAGTCATCTTCTTCTGCTCCATTTCTATCTCCTTTTGCTTGCAGAGGTGATTAGCAAGAATCCCATCCTGCAACATTCTGGCATTCTGTTCTCGGGAAAGCTGCCGCTGAGTCTCATTCCGTTCCTC a score=3717.000000 s hg15.chr22 14638302 22 + 49476972 ACTAGAAA--AAAAATTAATTTTC s mm3.chr14 3046201 24 + 115844145 ACTAGAAATTAAATTTTACCTTTC s rn2.chr15 11618209 24 + 99209255 ACTAGAAATTAAATTTTATCTTTC a score=8627.000000 s hg15.chr22 14638324 86 + 49476972 ATGAAATACTGGAGGTGTCCCCAAAATGA-TCTACAGGGCAAGATGGCGCCATCAGATGTCATTCACACAATGTATATCTGCACATT s mm3.chr14 3046383 85 + 115844145 ATAAAATATTACAAGTAACCCCAAAATGATTTTGCAGTGC-TGATAGCACCTTGAGATGCCACT-ACACAGCAGCTGCCTGCACACT s rn2.chr15 11618353 71 + 99209255 ataaaaTGCTACAACTAACCCCAAAATGATTTTACAGCGT-TGATAGCACCTTGAAAT---------------GCTGTCTGCACACT a score=16488.000000 s hg15.chr22 14638961 208 + 49476972 ATACTTTTTGTGTTTATTTTTTGGAAACATTTTCCACTTATATTCTTGATTCCTATGTATTTTATAAACAACTTAGAAATTCCTTTTAGA---------ACAAG----------------ACAGGGTCTAATATTATGTTTTTAACATAGGACTTTGAATTAATTTTATCTGTGTATGAGAGAGAG-ATGTGAAATAAACTCATCATTAAGCATTTTCCATTTTACTTTTATTT s mm3.chr2 112619044 222 + 181423755 ATGCCTTTTGTATACCTATTTTTATCATATTTT--ACT----TTGTTGTTAGTTTTATATTTTATGAACAACTTAAGAATCCTATTTAGAGAATTAAA-ACAGCAATAGTAACCACAATAATAAAGATCAGTATGTTCTTTAAAGAATAGGAC-ATAAATTAGTATTACCTATGTGTTGGGTAAAT-GTG---AACAAACTATTTTCTAGTCAATAACTATTTTTCTTCTAATT s rn2.chr3 73652498 224 + 165924081 ATGTCTTTCATGTATCTATTTT-ATCATACTTTCTACT----TTGTTGTTTAGTATCTATTTTATGAACAACTTAAAAATTCTATTGGGAAAATAAATTACAAGGATAGTAACCACAATAATAAAGATCAGTATGCTATTAAAAGAATAGGAC-CTAAATTAGTATTGTCTATGTTTTGAACAAATCTTG---AACAAACTAATTGCCAGTGAATAAAT-TTTTCCTTGTGAAT a score=3838.000000 s hg15.chr22 14642028 43 + 49476972 GAAGCAAAAGATTCCAACTGTCTTTTTATTTCAAATACCAAAG s mm3.chr15 16105901 43 + 104111694 GAAACAAAAGAGAGTAACTGTTTTTTTTTTTTAAATAATCAAG s rn2.chr2 63247211 35 + 246339213 GAACCACAAGAGAGTAAC--------TTTTTTAAAAAGCAAAC a score=22131.000000 s hg15.chr22 14642448 171 + 49476972 CAGTAAAGTTTGCAATTCCTCTGACTCATTTTACCATAATTGCAATTATCATGATTACCAGTAAAAGAATAGTGA---ATAACCACAATATTGGACTTTTCTCCCTAAGTGAAAAAATATTAACATAAAGAATGTAGATTATAAAAAGCCAAAAG----AATTTTAAAAATACATATA s mm3.chr11 117342629 172 - 122862689 AAACAAACTTTGGATTTTATTCAACACAGTTTGCCATAATTGAAAGTATCATAAGTACCAGCCAAAGAATAATGAATCATGGCTACAATGTTGGAGTTTTCTAT----GAGAAAAATGGTTAATATAGAGGATGTGGACTACTAAGTGCCAGAACAATTAATTC--AAAACCCATATA s rn2.chr14 25063029 166 - 107821284 AAATAAACTTTGGATTTTATTCAATCCAGTTTGCCATAATTGAAACCACCATAAGTACCAGCCAAAGAATAATGATTCATGCCTACCATGTTGGA--TTTCCCT----GAGGAAAGGGGTTAATACAGAGAATAGGGACTACTAAATGCCAGAGC----AATTC--AAAACTCACATA a score=30661.000000 s hg15.chr22 14642620 261 + 49476972 TTACCAGGCAAAATTGTTAAAATG-AACTCTGTCAAACACTTTTTAAGTGAGAATCAATC---------AAACAATATAGCCAGGATAAACTCCattcattcat-ttaatacttatttattaggtagctacgtctgataggctaggcctttttctaagaagtaaggatatggtaatgaacaataaaaaccctattcatgagagtgagataaacacacaataacaac-----agacagataaggcaaaa-tatacagtacattagaggagaaaaactaa s mm3.chr14 3058510 271 + 115844145 TAATAAATGAAAGTCCTGAGAACTGATGCACATCAAACTTTTTAAAAGTGAAATTTACTTTAATGTTTAAAACAACAC--TCAGGGTAAACTTCatttgctcat-acaacaaatatacattgagtagcttcttactgtatgctagcccactatctaaccaatgaggttacagtggtaagcagagaaaagactactc-tgatactgaagtacacatggaataacaataaatgagacaga-aagacagac--atatagtatgttggaGGAGGAAAACAAA s rn2.chr15 11638013 273 + 99209255 TAGTAAATGAAAATCCTGAGAATT-ATCCACATCGAACTTTTTTAAAGTGACAATTAGTTTAATGTTCAAAACAACAC--TCAGGGTAAACTTCATTTGCTCCTAACAACAAATATATTTTGAGTAGCTTCTTACTGTATGCTAGCCCACAATCTAACCAATGAGGTTATACTGGTATGCAGACAAAAGTCTACTC-TGACATTAAAGTACACATGGAATAACAATAAATGAGACAGA-AAGACAGACAGACATAGTATGTTAGAGGAGGAAAATAAA a score=2540.000000 s hg15.chr22 14642976 10 + 49476972 TAACACAAAG s mm3.chr1 135519433 10 - 195869683 TAATACAAAG s rn2.chr9 59182322 10 - 118059026 TAATACAAAG a score=8608.000000 s hg15.chr22 14642986 332 + 49476972 AAACTTTTATTTGTACATCAAAGACTCTAAAAAATGATGATGTTAACAGAGTTGATGTCAAGACACAAATAGGTTTGAA--GTTAGAGATGATAAATCACTGTTTCATTGAACCTTCCCTCAATTACGTTAGAGAGAATCCCTGGTATGCTC-----CCAATTGAATCTTAAGCCTGATGCGTCCTGGTGATACAATCGTAATTCCTTTCTGTTAGTCCTCGTTATC--TCTTTTTCTTTTTCTTCATTTTTCTCTGGACTAGGAATTGTGCTGGTACATGGTTCTTCCTCCGAAAGTGGTTATTCCTTAATGTGTTTCTTTTTACCCTTTTTCTTCTtct s mm3.chr15 359399 283 - 104111694 AGATTTTTATTTGTGTATCAAAGACTCTAAG----------GTTAA--AAGTTGATGTCAAGACACAAAAAGGCTTGAAAAGCTATAGATAATCAACC-------------------TCTCGATTATTTTAGAGCA----TCTGATATGCTCTGCTCCCAACTGAATCTTAAGCATGATGTGTTCTGGTGACAGGATTACGGTTCCTTTACATTAGTTTTCAGAATCAAtctttctttctttctttctttctttct----------ttctttctttctttctttctttct-------------ttccttctttctttctttctttcttttttttttCCCCC a score=1404.000000 s hg15.chr22 14643318 40 + 49476972 tagaaaggggattttaagtaaaaaactga---agtaatggaaa s mm3.chr15 359682 43 - 104111694 TAGGACCTTGTCTTAAATTAAAAGAAAAATAAAATAAAGAAAA s rn2.chr7 8401485 29 - 139049774 taagactttgtcttaaattaaaagaaaaa-------------- a score=43931.000000 s hg15.chr22 14645825 557 + 49476972 ACTGAAATGTTTATATTAAATATAGATCCCCATG--TACAATCCCT--TGGCAATATTCAGACTGA-----GGGTCCAATATTTCAGCACT-----CAGGCACTGACAACAA------AAATTTAATAATTAGCAATCTTGTTGCTAACAAGGTACAGTGTCAATGTAGCATGTAGCTTCCATTTCCAACACAGCAGATATTACAAGAATTTTAACAAGA-ACTCCTAAGATGTGTCATTAAACTAAATGCTTTAAATACATTTTAATTGTGAAATAATCAGTATACCCTAGATCTAACCTCATTTTTCAAAAACGGTTGCATAATACATTATTTTGGGGGTATGGACATTGAGCTATTTCCTATTGATAAGGGAGTAGACTAGCTCCAAATTTTTAGTATAATAATGCTATAATAAATGTCCTTATATGTAAGTATGTATGTAACATATCTACACAAATATCCTTTACATGTATTATACATCCTT--ACTCCGTTATATATCTGT-GTGTGTGTGAA-TATGCTACTAAA-TTAATGTTCAAAATGTAT-TTaccaacagtgtatg-aaatgtctttttcagtg s mm3.chr2 112629960 556 + 181423755 ACAGAAACATTTAT-TGACATATCATTTTCCCTGGATACAATCCTC-AAAGCAACATCAAGGCTAATTTATGGGTTTCAATTATCAATATA-----CAATCAATGGGAAGAA-CAGATGAATCTAACAACTAATAGCTCTGTTAATTGGGGAACAGAATTCCATTCTAGCAAGCAACTTCCTTTTGTAATTCGCCAAATGGTGT-AGTATTACAACAAAATTTTCTTGAAACATGCTATTAAAGTGGATGTTACAAGCACATTTTAATTGTGCAATAATGAGTCCACTATATATTGACACTCATCTTT---AAATGTTCATGTACTATATTTTTATATGGATATAATAATTTAA---TTTCTTATTGAT----GATTATTTTAAGTACAACTCTAAAACTTGATGATGCTTAAAGAAATATCCTTGT---TTTGTGTACATGT-ACCTACATATACAATCAAAGT---CGTATATTAAATATTCTTCAATTAAGTTTAATATGCATCACA--TGTCAACTTTTCTACTAAGACTAACATACATAATATATATTAGCAGCA-TGTGTGTGTTTGTGTTTAAGAGTA s rn2.chr3 73662119 546 + 165924081 ACAGAAGCGTTTAT-GGATGTATCATTTTCCCTGGATACAATCCTTTAAAGCAACACCAAACATAATTT-CGGGTTTCCATTATCAACACAACTCACAATCAATGGGAAGAAACAGATGGATCTAAAATCTAATAGTGCTGTTAATTAGGAAATAGAATTTCATTGTAGAAAACAACTTCCTTTTGCAATTCTCCAGATGTTGT-AGAAGTAGAACAAAATATGCTTGAAACACACTATCAAAGTGGAGGTTTCTAGCATATTTTCATTGTGAAATAATGAGGCCACTATATATTGAAACTCATCTTT---AAATATTCATGTACTACATTTTTATATGGATATGGTAATTTAG---TTTCTAACTGAT----GATTTTTTTAAGTACAACTCTATGACTTGATTATGCTTAAATAATTATCCTTGT---TTCATGTGCATAT-GCCTATATATACAATTAAAAT--AAGTTTACCAAATATTCTTGAACTAAGTTTAATATGCATCACATGTGTCAACTTTTCTACTAAACCTGACAT-TATAATATATATTTTCAGTA-TGTATG------------------ a score=38292.000000 s hg15.chr22 14646723 453 + 49476972 atg----ccttttccctcacatttgccaatactggctatt---tttcaaataaatt----a-----atgactggaaaaaatggtaactcattgtttactgattttcatttttctgattaacaggcaaggctgaatatCCTAG-TAAAAGTATAAAATTTGTTCATCA------------TGAATTAGATTC---ACAGCATAGAGTTATCTCCTGTTCAATGTTGCCACAGACTTACCTGTGATACTGTTCATTCTCAGTGTCAGGAAATTGCTGGCTTTCAGGTGTTCTG------------CTTTTCCTTGGTGGAATTAATCCATCATCACCATTGTCAGCAGTGGCACCGTTAGTCAGGTTTTCTGG-GAATCCCATATGAGTACTTCCGTGCTTCTTCATTTCTTCTTCAACCTTGAATGAAAGTTTGATATTAAGGATA---GTTATCCCTTTACTGAATAGAAAGAATATTTTTAATTGATTTTATCACTTGAC s mm3.chr7 25536301 447 - 134401573 ATA----TCTTTTTTAT-ACATCTTCCAATAATAATTATT----TTTAGACAAGAT----ACCAATGTGATTGGaaaaa---------------ttatatattat--tgtttttaaattCATGCAATATCAAGATATCTCAA---GAAG--TAAAGTTTGTTAATCACAAATATTGATCTAAATTAGAATCTT-ATAGAAGAAAAAT-----------AATGTCACCACATTCTGACCCATCCTGCTCTTTGCTGTCTACACTAGGAGACTCCTGTGTTCCGGGTTTCCCGGCCTGCTTGTTCCTCCTCCTCGGTAGAGGTGATGTGAGGTCACCGCCGTCAAGAGCAGCAGCCT---GCAGGCTCTCTGATGCGCCCCATT----CACTCCATTCCTGCTTCCTTCCTTCTTCAACCTTTAATGAAAGGTTGAGACAAAGGATAACTGCTAACTTTTCAACGATTAACATTAGTTGCTTTCTTTGATTTTATCACCCAAC s rn2.chr1 106475136 453 - 276301343 ATAATTACCTTTTTTAT-ACACTTTCCAGTCATGATTATTATTCTTCAGGCAAAATGCTTACCAATGTGATTAGaaaaa---------------ttatatattttaatgtttttaaaatCACAGGATGCCTAGGTATCTCAATTAGAAG--TATAGCTTGTTAATCACGCATATTAACCTAAATTAGAATTTTTATAGGAGAAAAAT-----------AATAGCAGCACATTCTGACCCATCCTGTTCTTCGCTGTCCACACTAGGAGACTGCCGGGCTCTGGGATGTCCG------------TTTTCCCTCGTTAGAGGTGATCCGATGTCACCGTGGTCAAGAGCTGCAGCAC---ACAGGGCCTCCGGTGCACCCCACC----CACTCCATTCCTGCGTCCTTTCTTCTTCAACCTTTAATGAAAGTTTGAGACAAAGGATAACTGCTAACTTTTCGACGATCAACACTAGTTGTTTTCTTTGGTTTTATCACCCAAC a score=3150.000000 s hg15.chr22 14647176 46 + 49476972 CAGTTTA---TCATTATTTTAGTCATTAAAAACATTTCACTCTTAAATT s mm3.chr2 112631941 48 + 181423755 -TGTTGAATTTTATGAATTTACTTCATAAAACCCTTTTGTGCTCAGTTT s rn2.chr3 73664073 46 + 165924081 ---TTGAATTATATGAATTTGCTTCATAAAACATTTTGGTGCTCAGTTT a score=726.000000 s hg15.chr22 14647222 10 + 49476972 GGATCATATA s mm3.chr11 117346429 10 - 122862689 GATTTGTGCA s rn2.chr14 25064105 10 - 107821284 GATTTGGGCA a score=11826.000000 s hg15.chr22 14647295 181 + 49476972 TTTTGTAAAGTTTGCTTCATTTCTGTTTCAATGAGTAAAA----CAGAATTTTCCAAAAT-TCAAAAAGGGCCCTCCTTTATTTTGTGCTT--TTATTCTCAATCACTCTTCAGAATCTTATATATGTATTTACCCCCATTTGACTGGTGGGAACACATAAATAAAAAGACAAAGATGCAAAATGTGT s mm3.chrUn_random 112505039 168 + 117911829 TTCAGCAACCTCTGCTTCCTTTCTG-CATGATGAGTAAAAGGCCCAGAGTATCTAGAAATCTTTGATGGGGACCTGCTTAGTGTTATGCTT--TTATCTTC---TGCTCTTTGCTACCTCACATCATCATTCTCTACAA-------AATGGAAAGACATAAAAAGAAAAG-------ACAAAATGTGT s rn2.chrUn 42711033 167 + 55450527 TTCAGTAACGTCTGCTTCCTTT----CAGGATGAGTAAACGGCCCAGAGTCTTTAAAAATCTTCAATGTGGACATTCTTAGGTTTAAACTTACCACTATTC---TGCTCTTTGGGATCTAAACTCATGGTACCCTTTAA-------GATGGAAATATATAAAAAGAAGTG-------ACAAAATGTGT a score=4644.000000 s hg15.chr22 14647476 288 + 49476972 CTTCATCCCTCTTTACCACCTAGATTTTACATTAAACAGTCATTTTAGA-GGATGAGACACCATGGGGCTTCAGGAATAGAATGGAAGATGGCCCTTTTCTGCACTAAGATATTCTTCTCCCCCACTGCCTTTGAGCATTCTTTT-------TTCATTAGGTTCCTAGGATATCAAAAACACGAAGGTGCTCACTGAAACATGGGAACCAAAGTTTCCCACAACATAAGGAGCAGAGTGAAACTGCTGAGGTACAATCATGGAATTCCAGAAAATGAGTTGCTCCCCAAATTTCAC s mm3.chrUn_random 112505207 274 + 117911829 CCTCTCCTGTCTTTATGACCTGAATTTTGAATT--CCAGCCAGATGAGGTGAATAGGGCAGTGAGGTGCTTTGAGAACAAAA---AGAACCTCTCTCTTCTGCACTACACTAACC--CTTCCCCAA------TGAATGATCTTCTACAGTTGTCCATTAGATACCTGGGATATCAGAACAGTGGAGCTGAATTGTGAAGTGCATGAA-TAAAGTATGTCACTACCTAC--AGCAGAGGGGAATTGCTGAGTTCCATGTATGGATTCT------ATATATGCCTTCCAAAATCTCAC a score=2257.000000 s hg15.chr22 14647764 37 + 49476972 ATTCGATAGCCATAAAATTTTCTAGCTG-GAAAATACA s mm3.chr2 112632428 37 + 181423755 ATGCATGCACTATAACATTTGATGCCTA-GAAGAAATA s rn2.chr3 73664568 38 + 165924081 ACTTGTTCACTATAACATCTGATAACTAGGAAGCAATC a score=14881.000000 s hg15.chr22 14648113 115 + 49476972 AACATTTGAATATAAAAGTATACCTT-TCTATCACCACCCTTATTTATTTCTGGTTCTTGAGACATTTCCTGCAGATGCAAAAACAGAAGGTTAATTTGCTTGTTGTATTTCT------------------------------------GTG s mm3.chr11 117350211 152 - 122862689 AACTTCTGGATGTCCTGGTGCACATTCTTTGTCATCTTTCGTGTTTATTTCAAGATCTTCAGACATTTTTTTGAGACGCAAAGATGGGGGGTGAGTCTGCTTGCTCTCCTCCTCAGGCAGGGGCTGGATCAGCGTGGTTGGATCTGCAGGTG s rn2.chr14 25066396 152 - 107821284 GACTTCGGGATGTCCGGGTGCACATTCTCTGTCAAGTTTCTTGTCTATTTCGAGGTCTTCAGACATTCTCTTCAGATGCAAAGGTGGGGTGTGAATTTGCTTGCTGTCCTTCTCAGACAGGAGACAGGTCGGTGTGCTTGGATCCACAGGTG a score=15340.000000 s hg15.chr22 14648228 327 + 49476972 --ATGTCTCCTCTTTTGGAGCACATGTTTTTAAAATAATTTTATTCTTAAGTAATCA---AGTATGGACaataaaaattagaaaataattaaaattaaacttaaaaaataaataataattaaaattaagattaaCTTTTTAATCTATGTTTAGCTACCGCCACATCACTGGCTTCTAAC----ATGTGAAAAATAATTCACCTTAGCCAAAGGGAGAAGAAAAACATGAACCAGCAAACTTAACTTGGTCACTATTTGTTCAGACTAAACTTAATTTGTTATGTGTTAAATCT-ACCAAAAATGAATCA-GCAGATCA-------------TTTGTAGTGTTGCAAAACCT s mm3.chr6 119214105 296 + 149950539 --GAGTTCTTACTGTAAGGCTGtatatttttaaaagaactttatttttaaataataaaaGAGTATATACAA--------AGAAAGCAGTTGAGATC----------------------TTACCAGTAAGA-------------AGGGCTTTAGCTAATTTTAAGTCACTGGACTGTAACTAAGAAGTAAAAGCTAACTTACT-----CAGTGTACAGTGGACACCGTGACCCAGCAGACTCATCGTGCCTACTGACTGACTGCACCACACTGGA----CTCTGTGCTACACTT-ACTAAACACAGATTACGAGGGTCGTGTTTTGTTTTGTTTTTTAGTGTTACAAAGCCT s rn2.chr4 151598698 291 + 183307734 aaTAGTTCTTCCTGAAAGGCTGTATA-TTTTAAGGGAACCTTATTTTTAAATAATCAAAGAGTATATGCAA--------AGAAAACAATTGAAATT----------------------TTACCAAT-------------------GTTTTTAGCTGTTTCTAACTCACTGGCCTGTAACTGAGAGGTAGACACTAACTTACTTACCCCAGTCTGCAAC-CATACAGGGACC--ACAGACTTAACG-ATCTATTGTTTGTTTGCACTGCCCTCAA----GTGAGTGCTACACTTAACTAAAACCACATTA-GAAGGCTTTGCTGTGTTTTG-TTTTTAGTGATACAAAGGCT a score=11884.000000 s hg15.chr22 14648555 664 + 49476972 TCCTCACTTGAAAAGAGTT-TACCTCATGAAACCCTAAC--TAGTGAGCCCCTACAGTGCACTGAAGTGCTTTTTCAAAAGATTCCTAACTGGATTGTAGGCACACTTTAAATTATTAGGAGCCGAAATCAACA---CCAAACAGAAAGAGATGCAAATTCTTACATTTTAATTGAAATTATATACTGTAATATGATAGTGTTATGTATCTAGATTATCTGC-----TTAAGTCCAGTTCTAATATATTCTAATATGTACTAATGACAGTAGATAAAAATTTTAAT-CTGTC--CTGATTTTCTGCAACTGAAATAAATTAGAAT----GTTATTGTGTTTGTGCACTAACACCAAAGGTCCCATTCTGCAAGATATGATTCCTTTAATAGGCAG-TTGGGTTGCTTTTTT--GACCTGGTTCCCTCCCTAAACAGAA----ACACTGAGGTCAATGAGAGACCACAAGGCAGAATATATCTTTAACCTTAGTATCAGTGACTGACAATATAAAACTGCAGATTTTCAATCACTGGCCATGATTACTCTTTAACCATGAATCCAGCTCAGGGACCATCAGTGTTACATTGTTCATAATTCT-ATTGCTTAATAATATAATCCAA--TAATTGATGTTACATTCTTCATCATGTTAGGATGTTGTAAAAATAAAAGAAC--AAAGTTCTGAAATT s mm3.chr14 3063192 653 + 115844145 TTCTCATCTAAAAATAGTTGTAGCTCACCTTATGTTGATCATAGTGAGCCCTGACTGTGCATACTAATCCTTTTCCCTAAGATCACTAAATAATCATTAGGCAAGCTTCGGATGAGTAAGAGCCAAAATTAATAAATACAAATCAAAAAAGAAACCAATTCTTAGATTTTACTTTAAGCTACATATTATTAGA----GGTGTGATGCATCTTTACTCGCTGTCTGTGTTAAGTTCAACTCTCATACATTCTAATTTCCACTAAAGACAATGCATAAAACCTTTCATGCTGTTTACTGATAGGCTAT-GCTAAGATAAAGTAAGACAGGAGTTATT-TTTGTATGCTCTACCCCACAGGTTCTCTTTCGGTAGG--ACGAGTCTATTA--AGGCGGACCGGGTAGATTTTGTAAAACTCTGTTCTCTGCCT---CAGTATTCTGCCCTCAGGACAATTAAAGACCATGAAACAGAACTAATTCTATAAATTGGCATGAGTGAGTGATAATAGAAAAGTACAAA-TTCAAGCCCCTGGGAATGA--GCCCCTTGCC------TCCAACCCAGTGGCTGTCACTGTTACATTGCTCACAACTCCAAGCACTTAATAGAAGAACTCAACTTAAGTCATG------CCTTAATCACAT-------------AAACAAGAGCATGGGAACTGCACAGATg a score=1460.000000 s hg15.chr22 14649219 202 + 49476972 TGTTTTTGCCTCTATTCCAAAAGGAAAGATTAGCTATAAGCTAATCAAGAAGGCAGATAAGAATATTTTAAAA-----TAAGAGTATTTTAAATTTCATAGTGGGTTATGTTGAAGTTAAATATCAAATATTAAATTAGAATCTATTGATTCTTTTAATAAGGTTGCTGAATTTATTACAATAAATTTTAAGAATCTATTAAAATAt s mm3.chr8 102595493 112 - 128923138 GTGTTTGGCCTC---------ATGGAGCATAAAGTGTAT----------------------AATGTTATTGGTGGTTCAAGGAATATTTGAAGACTCACGACTACTTAAGTT---ACTTAAGATTATACATTAAGTTG-------------------------------------------------------------TGACATAT s rn2.chr16 64465685 110 + 84226546 AATTTCGGACTC---------AAGGAGCATGAAGTCTAC---------------------CAGTGTTATTGAT---TCTAAGAATATTTGAAGACTCACAACTACTTAAGTT---ATTTAAGATTATACATTAGCTTG-------------------------------------------------------------TGATATAT a score=42351.000000 s hg15.chr22 14649728 540 + 49476972 AAAAGATTCTTAAAAAAAGAATCTATTGATTCTCAAAGCCTAGTCTCAAAAGTAATTTCATTTGGACTATCtaatattattaaagcaaaaa-----------aaaaaaaaataaaaaaCGTTAAACCAAAAGTTTAAATTTAAGAGTTTCCATGCCTCTGGCTGGCTATTTTCACTTCCTTTAAGCCTTTGTGACTCTTCCTCTGATGTCAGCTTTAAGTCTTGTTCTGTTGAAAAATCCATATATTCAGTTAAAAT--------CAACCACTTACAACAGTTAAAAACTATTGCCTTT-------------------TAAAAACAGATTTAAGACATTTCATTTT--------ATTTCATAAATTGAGTGTTTAATCTTTCATGAAATTG-TCATTTATGAAATAATTCTCAAAAACTTCAAAAAACCACTTGGGGAGACATCAG------ATGTCACCAGATTGAAGACATACACACATGTTAAAAATTCCCTCATAAATTCATCCACCCA--ACATAAATGAACAAAACCACCATAAACACAGCTTTAAAATAC-AGTAGAAACAA-----TAAAGTGACACAGTATATTGTTCTCCA s mm3.chr8 102671133 573 - 128923138 -AAATGTC----AAGACATGATCTATTGATTCTGAGAAC--AGTTTGAAAACTAACTTTCC------AATACAATATTATTGTTCCAATAATATTTTACACTATTAGACAATGAGAAACACTAAGTTTGTGATTCAAAATTAAACACTTAAATACCGATGGTGGATTCCTTTCAAAGCCATCTTGACGATTTGGCTCTTCCTCTGATGTCAATTTTACAGCTGGCCCTTCTGACAAGTCCATATATGTAATTAAAATAAACAAAAAAACCATTTAAGTAACATGACAATTATTTCATATACAGAAAAATAAACAATAGTAGTAACACCAATTGGACTTTTAATTTTCCAATTAGAATCTTCAAATAG---ATTTATTCTTCAACAGAATTACTGACTTACT---TAACTATGAAAAGCTCCCATAGAA----TAGGTAGAGAGCAGCCAAGTATGTCAC---ATACACAGCATACACACATCTCAAAAGACTCTGTAACAGTCACTCCATGAGACACACTATTGAACATA--CTTTCAAAACCAAACTGGAAAAAAAGAAAAAGAAAAAGCATTTAGAGTCATCCATTATACTTTTTTCCA s rn2.chr16_random 606862 546 - 1334849 TAAATGTT----AAGTCATGATCTATTGATCCTGAGCGC--AGTCTGAAATGTAACTTTCC------------------------CTGAACTATTTTATATTATTGTACAATGAGAAACATCAAGTTTGCAATTCAAATTTAAACACTTAAATACCGATGGTGGATTCCTTTCAAAGCCGTCCTGTCTGTTTGGTTCTTCCTCTGACGTTAATTTTACAGCTGGTCCTTCTGACAAGTCCATATATGTAATTAAAATAAACAAGAAAACCATGAAAGTAACATGATAATTATTCCATATATAG-AAAATAGACACTAGTAGTAACATCAATAGGACTTTTCATTTTCCAATTACAATCTTCAAATAG---GTTTACTCTTCAAGAGAATTACTGACTTATT---TGACTAT-AAAAGCTTCTATAGA--------GTAGACAGCAGTTAAATATGTCAT---GTACACAACAGACACACATCTCCAAGGG-TCTGTAACAATCACTCCATTAA--ACACCATTGAAAATA--CTTTTGAAACCAAATTGGGAGGGAA-AAAAAAAGGAAGCATTTACAGTCACACTTTACACTTTTCTCCA a score=9923.000000 s hg15.chr22 14650268 119 + 49476972 CTTCCTAATAGTACCTTATAAAT------------------------GATTTCCAAAATC-----ACTGCTGACACCTTTATTACTGTACA---ACATTTTCCTAATATCTAAAATGTTTCCCTCCATAATTCTGACAAATTTATTTTAAt s mm3.chr7 25541396 149 - 134401573 CTG--TGACAATAACTTATAACTAGCCTAAGCAAAATGCTCACGAGTGATTTCCAACACTCCAGTTCCTTTCACACTTTCACTAGTGGGCACACACTCTGTTCTTATATCTGATGTGTTTTTGTCTAGTATTCAAAACTTTTTTCTTTTAA s rn2.chr1 106478192 145 - 276301343 CTG--TGACAATAGCTTATAACCAGCCTAAGCAAAATGCTCACAA--TACTTCCAACACT-TGGTTCCTTTCACACGTTCTCTAGTGAACAAACACCCTGTTCTTGCATCTGATATGTTTTTGTCTAGTATTCAAAAA-TGTTTCTTTTAA a score=3764.000000 s hg15.chr22 14650687 28 + 49476972 CATCTTTTGAAAC--AATT--CTATGTGAAGT s mm3.chr8 102679543 32 - 128923138 CATCTTTTAAAACTCAGTTTACCATGTAAGGT s rn2.chr16_random 614710 32 - 1334849 CTTCTTTTAAAACTTAGTTTATTGTGTAACGT a score=46709.000000 s hg15.chr22 14650715 605 + 49476972 CTTCCTTGATTCTGCATGTCTTTCCCCAAATAAACAGGTATCTCCTTCCTTGAGGCTGCCTTAGTATTTTACTGATTTTTCTACGGCATCTTTACCCCCTAAGCTGTACATTATTTCTCCATATGTCTGTCCCCTCTGCTCCAAAACTGCA-GGGGAGAGTCTTGCACATCATCTTTGTAAAAACAGTCTTTGTTTTACTCAGAAAATTTGTATTGAGTCCTGCTACATACATGCTAG------GCATTAGGGTCTAAAAAGAATGAAAATAAAGCATCTCAGGGATGGCTTTTCTAGAACACATGCCCAAGCAGAGACTTAAATATTGAGGCTGGCCAGATTAAAAGGGGTAGAGGGCAGGAAAGGGTGA-CAG--CATGCCCGGCAGCAGCAAGAGCGGGAGCGAGGCCTGAAAGAATGAAAGTATTTGCCTACAATAGAAGGATGAGTGAGTAGGGCACTACCAGCAGCTCAGTAATGCCAGA-----GAAAGGGCACACAGGGAAAAGGGCTAAAGATGGAGAGTGGGGCAGAAGTCAGATTATGAAAGCCTCATGTGTAATTTTAAGATGCTTGGACATTAATGTTCAAGAGTGGTCCCTGGTCCTATCTGCATT s mm3.chr6 119215584 505 + 149950539 CGTCACTGGCT---------------------AACAGGTGCTGCTTTC-TTGGGGCTGTCTTAGCA--------ATTTTCCCGCCACATCTTTACCACTTGAGCTGCATTC-CCCTCCTTACATGTATATTCGTTTTGCTCCTGTATTGGACAGGTCAATTTTTAAAAACCATCTGCATATAAAGA-TTTTTATTTTCCTTGGGAACCAGTACTTGAGTTC--CTAC-TAAATGCCAG------GCTTTGGAGTC--AAAAGCATTTAAAGAATG-GCGCGAAGGACGGCTTTCCTAAGG-------------------GTAAACCACCAGGTTAGCCAGA----------TAAAGGGCGGAAAAGGATCATTAGTTCAAGAAAGGCAGCAGT----GTAAGAGCGGTGCCAAACGGGACGGTAA--------------------------GAAAAGGACATTACCAGCAATGTAGTAATGTCAGAATCATGAGAGAG-AAACAGAAGGAAGAGTTAAAGATTGAGAGCTGGGCAGAAGTCGGCCTGTGA-GGTTTTGCAGGTAAC-------TGTGTGG-CCCTAACATT--AGGGTGCTTTATGATCCCATCTGCACT s rn2.chr4 151600408 504 + 183307734 TTTTCGTGACT---------------------AACAGGAGTTGCTTTCCTTGGGGCTAACTTAGCA--------ATTTTCCCAGCACATCTTTACCACCTGAGCTGTATTTTCCCCCCTTACACGTGTGTTCTTTTTGCTGCTGTACTAGACAGGTCAATTTTTAAAAACCATCTGCATATAAAGA-TTTCTATTTTCCTCAAGACCCAGTTCTTGAGTTC--CTAC-TAAGGGCTAGCACTAGGCCTTGGGATC--AAAGGCAGTTAATGAGAG-GTGTGAAGGATGGCTTTTCTAAAG-------------------GTAAACCATTGGGTTGGCCAGA----------TAAAGGGCAGAAAAGGATCATCAGTTCAAGAAAGGCAGCGGT----GTGAGAGCGGTGCCAAGTGGGATGGTAA--------------------------GAAGAGGACATCATCAGCAATTTAGTAATGTCAGAAACAGGAGAGAG-AAACAGAAGAAAAAGTCAAAGATTGAAAGCTGGGCAGAAGTCAGCATGTGA--GTGTTACAGGCAACTGTGGGATGTGTGG-CTCTAATATT--AAAG---------------ACTGCACT a score=6693.000000 s hg15.chr22 14651320 91 + 49476972 TAGATATAGATCACTTTAA---ATGCCAAAACCAATATTTGT-AGTGAACCATTATTCATTAAGACAAGGTGACTGATAATTCATGTGGACACAA s mm3.chr8 102634171 89 - 128923138 GAG--GCATATCAACTCAAGATATGACAGGGACAATATTTCTGAGTGG--CATGTTT--TTAAAAAATGGAGACAGATTATTGAGTAGCACACAA s rn2.chr16_random 633561 88 - 1334849 GAG--ACAGATCAACTCAAGATATGAGGAGGACAATATTTCCAAGTGG--CATG-TT--TAAGAAAATGGAGACAAATTATTGAGTAGGATACAA a score=16472.000000 s hg15.chr22 14651938 212 + 49476972 GCTC-CTTGCTCTTTCTTTTCTGGCAGCTGTGACTCACACAGCTCATGGAGAGTATCATTCCCTAAGAGGA---ACAACTCCGATATTCATCTTTAT-----CTATTAAGTTCATCTGTCCCAATTCTGTGTTCTGTGGATGCTGACTTTCGGTCATGGATGGTGATACACATGGACATTTATCATCCACTTTCAGATTCTTGGAACTTTGACAAGTCTTA s mm3.chr6 119216501 209 + 149950539 GTTC-TTTGTTCTG--TTTTCTGTCTTCTATGAGTCACACAAGCCATGCAGAATATAATTTTCTAATGGAAAAGATACATTCAATATTCATCATCCCATGTCCTCCTGGGGACAGCTTTGCAAGTTCTGTG---CATGGCACCTGAGTTTTTGACCCTGACTATGCTATGAACTCATTTTTATTAT-CACGTTAACAC-----AATCTTTGATGAGTCTTA s rn2.chr4 151601309 207 + 183307734 GTTTGTTTATTCTG--TTTTCTGTCTG-TACGAGGCACACAAGCCGTGCAGAATGTAATTTCCTAACGGGAA--ATATGTCCAACACTCGTCACTCTGTTTCCTCCTCAGGACAGCTTGGCAGATCCTGTG---CGTGGCGTCCGAGCTCTTGACCCTCACTGTGCTACAAATGCCCTTTTAATAT-CAGCTTAACAA-----AATCTTTGATGAGTCTTA a score=8175.000000 s hg15.chr22 14654569 80 + 49476972 atgacctgtgcttc--AGTGTTCTTTTGTGATCAAAAATTCCTTACTTTTAGTTTTTTATCTATGGTAGAACCACCCAGAGc s mm3.chr6 119234112 66 + 149950539 ATGATCTATGTTTTATATTGCTCTTCTGTGATCAAAACATCCTTCATC-----------TCCATGG-----CTACCCAGGGA s rn2.chr4 151621167 66 + 183307734 GTGACTTGCGTTTCATATTGCTCCTCTGTGATCAAAACATTCTTCATC-----------TACATGG-----CTACCCAGGGA a score=52642.000000 s hg15.chr22 14655174 664 + 49476972 AACCTAAAGTAATTCACTGTTATAAGTCTTACCTGG--ATTGCTGTTTTCAGAAGAGACTTTTAGTATCTGTTTTTCTTTGTAGTCAGAAAGTAACTGGCAAATTCTATGTA-TAAAATTGTAATAAACCAAATTACTATTTTAATACTGATATAAAAAATACTTACCAAATGTG--AAATTCTTAACAGTATTTCAAACAATATCAGAATAACAGAACTTAACAGTATTATCCCATCCACTTATGAGTACATTCTGCAAACTT-----CTCT--------TTAAGCTTCTAATTAAAGAAGAAAAAAATGTAGGGTGAAATACTCATAAATCGAGGGCATG-TGACCCAGTAAAT----TAGGTTGCATTAACCTGACATAATAGAAAGTGTCCC-AACTCTGCATAagtcctagctccataatgaacagctatttgttcttggacaacttgcttctcttaggctcaatgtcttcttcaacaaagtgaggactttgctgccttatttccctaggttccgataaaaatttaatgagatCACATTTTTTAAATGCTGA-GAGAAATAGTAAAGCAATGGAATAATCTCTTCCTAAACTTTATGACTAAAATTATCTTGGAATCAC-AAATAAAACCCAATGCGTATTTTGTTCATAGGTTCTAATATGCAAATGTTGTAGTTTTCAGAAAA s mm3.chr2 111973046 612 - 181423755 AACCAAGAGAAGTTCACTGTCAGAAGTCTTACCTGTACACCGTTGTCT-----------------CAGTTCCTCTTCATCGTAGTCAATAAGTAGTTTCCTACTGTAATGTACCCAAAGAAAGGCTAATCAATTTCCTGTTCC-GTGTTGATAT-GAAATCCCTCGCCTATCCCTTTATACTTGAATCAGTATTGCAGGCACTACC-------CATGAC-----------ACTTCTAGGACTTTTAAACACATGCTACAAGCATGTGCACTCTGTGTTGTATTAAGCTTATAACTAGCCAAGGA--------AGGGTATAAGGATCATGAATC-AAAGCAAGCCAACTCCATACATGAACTAAGTTTTCTCA-----GCATAATGGAAAGTGTCCTGAACTCAG--GAAATCCTACATTTCTAGCCAATAATTGTTTGTTCTTGGACATATTGTTTCTCTTAGGTTTGATGTCTTCTCTTAAAA----ATGACTTTACTGCTTTAATATACCAGGCTGGTAT---GATTTAATAAGA----------TAAGTATGTATGACAAATAGAAAAGCCAAGAGGTCGGTTGTTTG------TTATGGCT-GAACTATATTAGACTCTCAAAATAACATTCCACATGTGTTTCCTT-GCAAGATCTGATATTCTTACATTGAAGTTACCAAAAAA s rn2.chr3 118058109 610 - 165924081 AAACAAGAGAAGTTCACTGTCAGAAGTCTTACCAGAGCATCGCTGTCT-----------------CAGCTCCTCTTCATCATAGTCGATGAGGAGCTTCCTACTGTAATGTACCCAAAGAACGAC--ATCAATTCACTATTCC-ATGTTGACAT-GAAATCACTGGCCTATCAGT--------------GTATT-TAGGCATTATC-------TAGGAC-----------ACTTCCAGAAGTTTTAGACATAAGCTACAAACATGTGGATTCTGTATTGTATTAAGCTTATAACTAATGAAGGA--ACATATAAAATATAAAGGTCATAAACCAAAAGCAAGACAACTCCATACATGACCTAAGTTGTCTCA-----GCGTAATGGAAAGTGTCCTGAACTCAG--GAAATCCTACCTTTGTAGTCAGTAACTGCTTGTTCTTAGACATGTTGTTTCTCTTACGTTTGATGTCTTCCTCTAAAAAATGATGACTTTACTGCTTTTATACACCAGGGTAATAT---GACTTAATAAGATAA-----TGTAAGTGCGGATGACAAATAGAAAAGGCACAAGATCATTTGTTTC------TTATGGAT-AAACTGTTTAAGACTCTC-AAATAACACTTCACATGCATCTCCTT-GCAAGATCTGATATTCTTATGTTGACCTTACAAAAAAA a score=1192.000000 s hg15.chr22 14655838 41 + 49476972 TGTTATTAAGTCCGAATTTTGCCTCTTAGTTGTCCTACTCT s mm3.chr2 111973658 36 - 181423755 ---TATTAAGGCCCACTTTTG-TTATTAGTT-ttctattct a score=5402.000000 s hg15.chr22 14655879 197 + 49476972 TTATGGCTTATATTTCAGGGCATCTCAACTATGTCATAGTTTGTAACTAAATGTATTCCTAAATATCTCATTAAAGTAGATAATGTGATTGTCCACTATTACGGAGTTGATCAATCACACCAAGGGCAGAAAAACCAATGGATGTTAAGACCTGGTTTGGACCAATGAGCCTTCTCTACAGACTCAAACTCTGAGCC s mm3.chr6 119234587 177 + 149950539 CTGTGGCC----ATTTGGGCCAAATCAGTTACATAGTAATCTGAAACTAAACGGATTGGTCAATAGCTCATTCACCTAG-----GTAACTCTCTACTATGACCGAAGTATCCAAT--CACCCAGGGCAGAAAA---CGTGAAGACTAAGACTTGGTCTGGG-CACTGTTCCTTTCT-----AATCAAACTCTGACCC s rn2.chr4 151621618 100 + 183307734 CTGTGGCC----ATTTAAGCCAAATCAGTTACACAGTAATTAGAAACTAAATGTATTGGTAAATATCTTACTAAACAAG-----GCAACCATCTACAATGACTGAACTA---------------------------------------------------------------------------------------- a score=7003.000000 s hg15.chr22 14656076 65 + 49476972 CGCAGATGTTGGTTACAATGATGCTTTATATTGATGTTCAATTCCGGCTGACATGGGAGACCAAA s mm3.chr2 112762790 62 + 181423755 TGTAAATCCTTGTTGGAATGA---TTGAGTGTCCTGTTTATCTCCAAATGCTTTGGAAGATAAAA s rn2.chr3 73803237 62 + 165924081 TGTAGATCCTTGTTGGAATGA---TTGATTGTCCTGTTTATCTCCAAATGCTTTGAAAAATAAAA a score=4028.000000 s hg15.chr22 14656552 139 + 49476972 GGCTCTGTTGAGTCCAACTAACCTACCTGAGATTCTGAGATTTCTCTTCAATGGCTTCCTG-TGAGCTAGAGTTTGAAAATATCTTAAAATCTTGAGCTAGAGATGGAAGTAGCTTGGACGATTTTCATTATCATGTAAA s mm3.chr7 50891684 140 + 134401573 GGGCTTATTAAATACAGTTAATAAAATTTACATTCACAGAATTATATTTAGTGACTTCCTTCTAAGGTAGAGTTGGAAAATATCCTGAACTCTTAAGGTACAGACTCAAGTGTCTTGAGAAATGTTTCTTAATATAGAAA a score=95883.000000 s hg15.chr22 14656877 1335 + 49476972 -TGACCCTTTAGAACAAGCCTACCTAATATCTGCTA-GAGAAAAGACCAACAACGGCCTCAAAGGATCTCTTACCA-----TGAAGGTCTCAGCTAATTCTTGGCTAAGATGTGGGTTCCACATTAGGTTCTGAATATGGGGGGAAGGGTCAATTTGCTCATTTTGTGTGTGGATAAAGTCAGGATGCCCAGGGGCCAGAGCAGGGGGCTGCTGCTTTGGGAACAATGGCTGAG-CATATAACCATAGGTATGGGAACAAAAAACATCAAAGTCACTGTATCAATTGCCATGAAGACTTGAGGGACCTGAATCTACCGATTCATCTTAAGGCAGCAGGACCA------------------------GTCTGAGTGGCAACAATGCAGCAGCAGAATCAATGGAAACAACAGAATGATTGCAATGTCCTTTTTTTTCTCCTCCTTCTGACTTGATAAAAGGGACCGTCTTCCTTGGATTTAGTGAACC------CCTTTGGTTCCTGAAAAATTCAAGGAGTATCTAGG--ACATAGTCCCCAGAAGACAGTACAAGACTTTCTGATAAACTGGACATTTCAAGACCCAAATAACTAATCAGAAAAATCAA---------------------AGATGTGATACTA-----------TTTTTTATC------------------------------------CCATGCATAGGTGCTACACTTGGATCAAATGAACAATGTTGGGATCTCTATGGATAAAGGTCTTAAAAGTCCTG-------------------------------------AGATAAAGAATCCTG--CACCCACTGGTACTTCTAACTT----------------------GTCTTGTTTTTTGTCTG-----------ATTTCTGGCTGATGCAGGGGACTAGCTCACTGCCACACGAAAATTACCTGAACTGAACTATGACATCTCACCTGATATGTAAGATGTAACTGTTATAATTATTTTAAACCTCAATTTAGCATTAACTAGCCTTTTAATGTAAACACTTACACATTATGACGACTAGAAACAGCATACTCTCTGGCCGTCTGTCCAGATAGATCTTGAGAAGATACATCAATGTTTTGCTCAAGTAGAAGGCTGACTATACTTGCCGATCCACAACATACAGCAAGTATGAGAGCAGTTCTAAAATG--ACAGAGATAGGAACAGTAATAAAGTTATTTTA---AAAGCTAATTTGATA------TACTTTACCAATTTAACATCTTGCCTGTCCGTGCAGAATCAAACATTTACATGCACTAAAAGACATAAGCATCTTCAGTGCTCAAGTGTTCATCTTTGTAAAATACCACCAAGGTTGAAAGG-AAGGGACAAAAAAAAAAAAACCCTCT-TATCTCA------------------------------GTGGGGTATTGCATA---------------GCAGAAGCT---------------------ACTAATTTAAAGTCCTT------------TGATGGACA------AGAAACAATATT-----AGGGCCACTTATCTGAAATGAA---------------------CAAAGATTTAAGTGAAGATTTCATCACAGCTTC s mm3.chr2 112763066 1512 + 181423755 -TGACAGCTTAGAATGATCCGAAGTCATAGATTCTACCAGAAGAGATGAACAAATTCTTCAAAA------TTAATGAAACTTGAAGGTCTAGAATTA------AGCTGGCTGTGGACTCCACATCAGGTTCTGAATAAGTAAG--AGGATCAAATTGCTAGCAATAAGCATGGCATAGGCTACAAAGTCCAGTAGCCAAAGGAAAGCACTACCACTGTGGGACTAG---CTCAGTTAAAATACTGTAAATGT--------------TCAATGTAA--GTGTGAATCACTGTAAAG-CATTAGGAATCTGATTTAACAAAGGTAACGT-GGGTATCAATTTCAACTACTATTGTTCTCTAGAAG---ATCT-AATATCAACACTGTAGCAACAGAATCAATAGAAGCAAAAGAGTGACTAGAATGTCTTCTTTTT----CTCCATCTGTATTTTGAAAGAGAGCTCTCTTACTGGGAGTTAAGAAATCTAGAAACCATTATTTTC---AAGTTTCAAATAATAATAAATGGAAAAAATGATCAGAGAAAGAAACACTATCTTCTATTTAACTG--TACCTGAAGAATAAAACAGCTAATTAGAATATCAAAATTCTGACTCTATA-------ATATGTAATAATA-ATATATACACATATATACA------------------------------------AAATTTATAGAGATTATACTTGGATAAAGGGGAAA-TATTAGGATCCATAAAGTTAAAATTCTGGAAAGTCCCACACAGAGATTTAGGTCAGTACCAGAATTGGCCATTACAGATGAGGTACTTGGTTCAATCTTCAGCATTTCCAAATCAAATCAAGAGATTAAAAAAAAAATCCTTTCCTTTTTCTACTAATAATAATATATGTATTCCATATTGGA---TAG-TCACTGCTATTCCAAAAGAATCTAGAGTCAACACTGAAATATTATGTG--AGGGAAGATGAAGACTTTGTGGTTAATGTGAA---CAAGTTAGTGTGTACTCGC-TTCTAATGCAAACACTTACCCTTTACTTGTGCCTTCAATAGCATACCGTAATGCAGTCCACCCAAATACATCTCTAAAGAAAAAGTCAATGCCTTCATCCAAAAGTAGGTTGACCATATCTTTTGAGTCCCATCTTATGGCATATAAGAGTGTGTTTCTGAATTAACACAGAAATAGTTCCATTATTAGG--TACTTAAATTAAAACTG--TTAATATTTGGGTATATTACAAATTTACTATCTTGCTTATCTGTTTGGAATTATCCTTTT--------TATCACACATAAACA-CTATGGTAAGCAAGAGTTCATTTTTATATATTGTATTCAGAGACAAAAGGAAAG----AATGGGTAGGAAGCCTTCTGTACTGCACATACTATACATG-AGTATACACTGTATATGTTGTGTGCTGTATATACTATATGTG--CTATAGATACTGTATCTAGTGAGTGTACTATAAatgctgtgtatgctttgtatactgtgtatgctgtatatactgtatatactgtatTCTTAGTGGGATTCTTGATAGAATTTAAGTGTTTAACACTCATTCTTCTTAAAGACTTAAATGAAGGTGTCTCCAT--TTTC s rn2.chr3 73803496 1505 + 165924081 TTAACAACTTAGAATTATTCCAAGTCATAATTTCTACCAGAAGAGATGGACAAATTCTTCAAAG------TTAATAAAACTTGAAGGTCTGGGTTAA------AGTAGCATGTGGACTCCACATCAGGTTCTAAATTAATAAG--AAGG----ATTACTAGCAATGAGCATGGCACAAACTAAAAAGCCCAGCGGTCAAAGGAAAGCACTAACACCATGGGACTAATAACTCACTTAAAATACTCTAAGTGT--------------TCAATGTAA--GTGTGAATTACCATAAAG-CATTAAGAATCTGATTCAACAAAGGAAACCT-GGTTATCAAGGTCAACCACTATTGTTCTCCAGGAGCAGAGCT-AATATTGACACTGCAGCAACAGAACCTGTAGAAGAAAAAGAGGGACGAGAATGCCTTCTT-------CTCCATCTGTGGTTCAAAGGAGAGCTCTCTCCCTGGGAGTTAAGAAACC-AGAAACCATTATTTCC---AAGaattaaataattataaat--aaaaattGATCAGA------AACACAACATTCTGCATAACCA--CGTCTGAAGAATGAAACAGCTAATTAGAATATCAAACATCGGAatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACTTTATGAAGATTATACTTGGATAAAAGGAAAAATATTAGATTCAATAATACTGAAGATCTGGAAAACCCCACAtggagatgtaggtcagtgccaggattgaccgtagcagatgaggtgcttggttcaatcttcagcattttcaaaccaagtcaagagat--aaaaaaaaatcaaCCCCTGTTTCTACTTCTAATAGTATATCTTTTTCATGTTGGA---TGG-TCACTGCTATTCCAAAGGAACATAGAGTCAACAATGAAATATTGTGTG--AGAGAAGATGAAGACTTTGTGGTTAATTT-------------------ACTAGCATTCTAATGTGAACACTTACCCTTTACTTGTGCCTTCAATAGCATACCGTAATGCAGTCCACCCAAATACATCTTTAAAGAAAAAGTCAATGCCTTCATCCAAAAGTAGATTGACCATATCTTTTGAGTCCCATCTTATGGCATATAAAAGTGTGTTTCTGAATTAACACAGAAATAGCTTCATTATTAAG--TATTTTAGTTAAAACTA--TTAATACTTGGGTATGTTACAAATTTACCATCTTGCTTATCTTTATGGAGTTGCCTTTTTA-------AATCATATATAAATA-CTGTTGGAAACAAGTGTATATATTTATATATTGTGTCCGAAGACAAAAGG-AAG----AGTGGATAGGAAGCCTTCCATATTGCACATACTGCACACATTGTATATACCTTATGTGTTGTGTGCTGTGTATACTATATATGATATATATATACTGTATATAGTGGGTGTGCTGT-AATGCTGTATATTCTGTGTATGCTTTGCATGCTGTATAAACTGTATATACTGTATT-TTAATGAGAT---------------------------TCATTCTTAATTAAAACTTAAATGGAGATGTCTCCAT--TTTC a score=2002.000000 s hg15.chr22 14658212 259 + 49476972 CCTAGACTGATATGCTGTAATAGAAAATCAGCTAGGGGGTAAAATAACTAAGAGCTCTCTGCATGCTGAAAGCAAGTAAGATTAATAATAA-------TGGTAAGAATAGTAGTCACAGGAGTTTCAGTTAATGATGCCAATAAGCAtgtgctaggcactgaattaaatgccacatatatctttcttatgcacagcaaa--ctttgaaggatatattctcctacttttcatatatgacaacatatttggtggtaaataacgttcccaa s mm3.chr2 112764578 239 + 181423755 ACAAAATTTGTATTATATAATTATTAATCAATTA-ACAATCAGATCATTGAAAACTATTTTCAGtatttaaacaa-taaaat--attataaaataCTTTTGTCATAATAGCATTTGCTGTATATTCACTTAGTAGTGATAAT-AGCATGTGCTCTACACAGTACTAAATGATAAATAAATGAT--------AAAACAAAACATTTCCAGAATAT----------TATTCATAT----TATTATATTTGGTAATACATAGCA--CTTAA a score=41452.000000 s hg15.chr22 14658471 686 + 49476972 ggtcacacacctagcaagtaagaaagttaggaattaaaaccagtat-tgtgtgaatctaaagcctaacttttttctctttatcacCCACCTACGGCTTGTCTTCATTAAAGGAAAAGTGTATCCACTTAAAACTATCTTCACTCCCTCTCTCCATACCAATTAAAAATAAAAACATCAAAATACACTGGAAATAAAAAAGGAAAAAAGCTGTTGAACCCACAGTACGTGGGAACAGCAATTAATTGTCATGCAGGGATAAGCTAACATTAATATTCTTCAAAGAAAGCAACTTAAGGCAGAATCATTGAAAAGACAAAAGGATTTTCAACCCCTATTT--ATGGTTAATACAGCGTA-TTTAGTGGAAAAGCATGTAAGACACAGGTTAAAAACTATTAGAAAGGGTTAAGAAGTTCAATACTGAGTCATAAAGTAAACTAAAATTAAAGTTCAAACTTCATAAAATATGAAATCC---------CTT---TAGCTAACATAAGATCATGTAACCAAAAACATTACATAGCAAATAA----CATCAGTCAATATAATAAAAGATGAATCCTACTAAAACT--TTTATGTTGCCCAGTCCAAATAATTGTTTTTC-TACCGAACTGATTTGTGTTCATACTGATCACTATAT-CCCAATAAGTATAC-ATTAATCT------TATTAATTTAATATTTATGACTTGAGTGACTGCTAT--- s mm3.chr2 112764817 652 + 181423755 AATCAAATGCCTAGCAACTAACTA--TCCAGCATTATCAACAATTTATTTGTGAATCTGCA---------TCTACTC----------GCCTATGACACAGCTTCACT------AAACTTCAACCTAGTGAAGCTAATTTGTTTTCCTTTTCCAATACTAAGTAAATATAAAAACATCAATACCAATCAGACATAAAGAGGGATGGGA----TTGA----GCAGGATCCTATAATTACAATTCTTAGCCACCAAAAGAAAATCTGAGCTCATTATCCTTCAAATTAAAAATTGAATGGTTGTGTCATCCTACCTTTAGACTGATTGTCAACTCTTTCTC--ATAATTAAGAGAGAGCATTTTACAGGACAACTATATAAGAAAAAGTGAAAATACTAC--AAAATG---------------ATTTACTCGTGTTGTGAACAA-----AAGGCTCAAACTTTAAAAGTTAGCAAAACCAAAATGCAAACC---TATATATTTTATGGTTGGTTGGCCATCCAAACAAAATATCAAAAAAGAAGCATTAATCAGTATTAAGGGGTATGAAGCTTATTATAAATGATTTGTGTTGCTCACTTCCA--CATTGCTTTTCTTACCTAACTGATAAAACTAATGACTAATTGATGTATGATCATTTAATACCT-GTTAGTCTTCTTTCTATCAATTTGCTATTTCTTAGCTGCACGATTGTTAT--- s rn2.chr3 73805014 609 + 165924081 AATCACAACCCTAGCAACTAACTA--TCCAACATTATAACCAATTTATGTGTGAATCTGCA---------TTTGCTC---------------------------ATT------AAACTTCATCCTAGTGAGGCTAATTTGCTTTCTTTCCCCACTAATAAGTAAATATAAAAACATCAATGCCAATTGGACATAAAGAGTGGTGGGC----TTGA----GCAACATCCTATAATAACAATTTTTAGCCACCAAAAGGGAAT-----------------------------TGAATGCTTGCGTCAACTTATCTTTAGACTGATCGTCAACTCTTTTGTGAATAAT------ATAGGATTTTATTAGACAAATGTATAAGGAAAAGCAGAAATACTAT--GGAATG---------------ACTGAGTCTTTTTGTGAACAA-----AAGGTTCAAACTTTAAAAATTAGTAAAACCAAATTAAAACCCATTGATCTGTTCCAAAATTTGTTGACCAATCATACAAAATATCAAATAAGGAGCATCAATAAATATAAGGGGGTATGAAGCTTATTATAAATGATTTGTGTTGCTCATGTACA--CATTGCTTTTCTTACCTAACTGATAAGACTGATGATTAATTGATATGTGATCATGGAATACCTAGTTAGTCTTCTTCCTATCAATTGTCTATTTCCTGGCTGTATGATTATTGTGAT a score=5603.000000 s hg15.chr22 14659157 470 + 49476972 CCATCTAGA-ACACACAG---ATTAAAAG--AAAGAACTATACCTTCCATATCTATCCAGTGCATTTAAATTTGCTTTTTTCTTGATTAAAAATTTCACCACTTGCTGTTTTTGCTCATGTACACCAAGTAACAGTGGTGTGAGGCCATGCTGTAAAACAATATAAAGCAAAAACGTATGTAATTCAAAAAAGTACATATTCCTCAACCGAAGTGGAAACTTTATATAAGATCTTATGGAC---TTACATGCAT-AGAAAGTAAATAAAATGTAGTCGCTTCCTTCTCACTCTTCTGTGCTTTCCCACACGCTGCTCCTTCCCTTGGAAACACCCCTTCTCTGCCT-CAC----CACAGTAACTCTACTCATCTCAAAAACTCACTTTAAACATTT-----------ACTGC---TTCCAA--GGCTCTTTGCTTCTAACCCAGCATTTGATATGGTATTATTGGATGGTAAtatttttcccatctaaacaaagagctcct s mm3.chr7 50894545 481 + 134401573 TATTCTAGACACCAGTAGTGTTTTAAAAGTCAAAGTACAGTACCTTTGATAATCATCCCAGGCATGAATATTTGCACCATTTTTTATTAAATATTCTACCATGAGGAATTTTCTTTCTCGGAGTGCTAGAAGTAGAGGTGTAAACCCATCCTGt--aattatataaattaa---------taattCATAATACTGCATATTTCATAGCTAAACTGAATATCATATATCTAGCCCTGTGAACAGAATACTTACCTCAGACTAGAAACAA---GTAGTCTTTTCCTTAATTGCCTAATGCACATTCTCA-----TGTTTCTCAGCATTGCAATGCTCCATCCCTCCCTACACCTTTCAGAAGACCTCTAGTCTACTCTAAACCTGATGTAAAACACTGTAGTCACATAAACAGCATGTTCCAATGGACCTATGGTTCCCATCACAGCATCTGTCATTATAATTTGGAGTCAAGTTACTGTTCCCCTCT-AATAAAAATCTCCT a score=2144.000000 s hg15.chr22 14659627 42 + 49476972 tgagggcaggggctgtatcttttgtttct-atatcctcaaccc s mm3.chr2 111977307 28 - 181423755 --------------TGATTCTCTGTCTTT-ATTTCAACAATCC s rn2.chr3 118061714 29 - 165924081 --------------TGATTCTGTGTCTTTTATGTCAACAATCC a score=22727.000000 s hg15.chr22 14659676 623 + 49476972 AATTGCGTATAAAGCAAGAATTTGC-ATGTAAAATATTTCTTTAGTTTCATGTTTTACTGAAAGTTCAACC-----TCCAACATG--CAACAAAAATTGCTATTA---------AAACTCACACTGCCCATCTGA----AAAAATTTTCCAACatttatttatttaaaatctatttatatttaaCTTTCCCAGATTGTTACTAAATAATCAGTTCATAGGACTACTGAAACTAAATTAACAGAATTCCTATCTGCATTCTTAATAACTCCATGGTTTTAAGTGTGTAA--AACTGCCATGCTGATTATGCCAAA--GCTCTACATA-CTTAAAGAGACACACTGGACAGTCCACAATACAGCTTCAATTGATAAAAAACAGTTTAGAATTTG------------------CTTAATTCCAATTGAGAAAACTCTGCTCTTAAT-----------GACTTACTGACCTAAGCACTTGAATGACTGAACAAAGAGACACAAAATCCTGAGAGGGCCATCCTCTACTTATTGAAAGACTGCTCACAGCAAACTACTAAAGACCTTCTGAATGGCAGTGAATAACTGATGGTAGAAAGGAAAATATATTATTCTGTAACCTGATA--------TGTAACCTGATAGATACT--------------------ACCAATA-------------------------------ATATTCAT-------------TTTAATGTCTCAACCACAGAGATA s mm3.chr2 112769197 560 + 181423755 AGTGTTTTCTCCAATGGGTTTTTATAATCCAATATTTATAACTTAGTAGAGAATTAATAGAGAATGAAATCATCTCTCTAAAATGTTTCACAAAAATGTTAATTACACCAAAGAAAATATACACTCTTATCGTTAACCCAGAAAGTTTCAAACACTTA---ATTTGCATTTCACTTGCATTCTGCTTTCCCTTGCTGTT------------------------------------------------------------------------TGGTTTTCAGTGTTTAC--AAATGATAGGAC-ATGATGCCTGG--CCTTTATGCA-TGTAGCAAGTCACACTG---AGAACACCTAACAGCTCCAACTGTCAA-----GATTTGTCATTTG------------------CTACTCTTTGGCTTACAAAAATCC-CTCGCAATTACCAGTATGAAACCTGTTGACCTTAATACT-------------AATTATACATAGAACTTTTAAAAGTCCAGCATCTAATTATTA--------------------TTTTCAAGATCATTTAAA-AGTAGTGAATTATTGTTGGCTAAAAGCAAAGGGAATTATTCTATAAGCCAATGATTGCTATTATTACTCCATTGTCTTT--------------------CCAAATGTGT----------------------------GTGTGTGTTTAAAGAAAATTCTTTACTCTTTTACTAAAGAAGACA s rn2.chr3 73806532 610 + 165924081 AGTGTTTTCTCCAATAGGTTTTTATAACCCCAAATTTATA-----------AATGAATAGAGAATGAAATCATCTTTCTAATATGTTTTACAAAAGTGATTACTACACGAAAGGAAATATATACTCTTAACATTGTCCCAGAAAGCCTCAAACACTTG------TTAATTTCCCTTGCATTCTGTTTTTCCTTGCTGTT------------------------------------------------------------------------TGGTTTTCAGTGTTTACTGAAATGCTAGGTC-ATTATGCCTGGAACATTGATACATTGTAGCAAGTCACAAGG---AGAGCACCTAACAGCTTTAACTCTCCA-----GGTTTGTGATTTGTTGTAGAAAAATTTGTGTTTGTTATTGGATGTAGAAAAATTC-CTTGCAATTACCAGTTTGAGAACTGTTGAC-------TT-------------AATAATACATAGAACTTTTAAAAGTCTAGCATCTAATTATTA--------------------TTTTCAAGCGCATTTAAA-AGTAGTGAATTATTGTTGTCTGAAAGCAAGGGGGATTATTCTATAAGCCAATGATTTCCATTGTTATTCCATTTTCTTTATacacacacacacacacacacacatatatatatatatatatatatataATGAAAATGATATATATTTAAAGAAAATTCTTTACTCTTTTACTTAAGAAGAAA a score=14623.000000 s hg15.chr22 14660615 155 + 49476972 AATGT-----TATTGGAAAGGAAAGATTTAAAGAAATCAGCACATATCCAACTCCAACTCTTCTAGAGATACCTTAAGTTTCTGAGATATA-AGAATTTATATATTACATTT---ATGTATTCAGTGGTTCTTAAG-CAGGAGTGTATCCAGATTTTGAGAAAAT s mm3.chr2 169524808 156 - 181423755 AGTGC-----TTCAGGGAAGGGAAGCTTGGGAAGATGGAGTTCCCAT-CAAATCTGACTCATCTAGACAAGTCTTAAGTTTGTGAGATTTATAAAATTCACTTATTACATCTCACAT---TTGAGAGATTCTTATGTTAAAGCTGCATCAGGACCCCAATGAAAT s rn2.chr17 356976 157 - 93540836 AGTGCAGTGTCTTTGGAAAGGAAATCTAGGGAGGAAGGAGTT-CCAT-CAAATCTGACTGTTCTAGAGTTGTCTTAAGTTTGTGAGATTTATAAAATTCACTTATTACATTT---AT---TTGTGAGATTCTTATGTCAATCCTCTATCAGGACTACAACAAAAT a score=12265.000000 s hg15.chr22 14660917 381 + 49476972 TTCAAGGAAACATTTTTAAATATACATATCCAAGCTTTATTAGACTTACTGTATCAAAATCTTCAGGAATAAGCCTAGACTTGTTGATTATTTAAAAATTTTCCTCAGGTTACTGGGATGCACAATTCTAGCTGAAAGCTAGTACA---ATAGAC---AATTACTTCAGTCTCATTTCTCACCACCCAGATAACCAATTCCCTTTCTTATTTGAAGATTTGGCCAAAAAGAGTAAAGAGTAGGAGAGAGACCCATTTGCTGAAAACACCACATAATTTTTCCC-------GGTAACACAACAGTATCTAGTCAACTCAAAATCCAACTTGATCTTGTTACTCATTTATCTTCCACCTTCCCATCCAGACACTCTAGATTTGAAAGCAGAGCTGA s mm3.chr8 102740283 293 - 128923138 ATCAAGGAAATATTTTCTGAAATGCATGCCCATTACTTATCAGATGT-ATGAATCCAGCT---------------------------------------------------------GCACACAGCTGCAACTGAGAACCAGAACGCACACAAACAGAAAGAACTTCAGTCTCATCTATATGGCCATGGACAA--GAGTCTCTTCATCATTTGGGTATTTGACTCAATGGCTAAAAGC-------AGGGAACACACAAGTCGGAATGCAAC--AATTTCAATATTTTTTTTA----AAAGCAACATATAAACAATTAAATATTTG----------------------------ATCCCCAGGGCAAACAATTGTAGGTTTGAGAGCAGAGCTTA s rn2.chr16 64606903 259 + 84226546 CTCAAGGAAACATTTACTGAGATGCATGCCCATTACTTATTAGATGTAATGAATCAAACT---------------------------------------------------------GCACACAAGTGCAGCTGAGAACCAGAACCCACACAAAC----AGAACTTCAGTCTCACCTACGTGGGCCTGGACAA--GAG---------------------GGACTCAATGGCTAAAAAC-------AGGGAGCCTGCAGCATGGAATGGAACATAATTTCAATA-------TAGAAGAAAGCAATAT--------TTAAATATTTG-----------------------------CCCCCTCAGCAAGCAATCGTGGATTTGAGAGCAGAGCTTA a score=1160.000000 s hg15.chr22 14661298 362 + 49476972 GGCT--------------------------------CTAATTGGCCACTTCTACCAGAAGAGGATACTAAGTCAGTTAATTACTTGATATTCCCCCTGCTCAAGGGTTTCCCCTTACATTACC--CACCTATTCACTGCCAATCTGGTTCCTCAGAGGCCT-CCTAAAATTCATCTCTAGGCA-GTTTACAACCCACTAACTCCCTCTCCCAAACTGAAAACTGTCATTCTCTAAAATCAAAGAGAACTTTGTCTCACCATACAAAGGAAATAAATAAATGAACAACAACAACAACACCACACACACACAACCTCTTCATGGTCTCTTCCCTCTATTGCCTAATTTCCAAATTGGCCCTGATATTTCTGACTGCTCTCTTTTTCCCTTT---------CCACTTCTG s mm3.chr8 102740576 338 - 128923138 GATTGTGTTGTTGTTGGTTGTTGTGTTTTGTTTTACCAAAATGGATATCTCTTCCAGAAG------CTATACCAGTGGACAGCTCCATAGTCCCTCCA-------GTTTTCC---ACATAACTAGCACTTAGTCACTACCAGTCTCATATTTCCTAGGTCTTCCTTCAACTGATCGCTAGGTACGTTTGCAGTCAGGTAGCTTTCTTGTTCACAC----AACCACAATTTACTAC------------CTTTGAC------------------------ATGAAGAGACACTGCATCAGCACACAT--------TCCTCTTGCTTTATTGTCTCAAGTACCTCATTTTTCATTT-----TCATAAGTACTTTTGTTGTCTTTTGAGTTTTGACCTAATGCCATTTCCG a score=102844.000000 s hg15.chr22 14661660 1127 + 49476972 CCTCATGAGCAATCAGAAATATCTTAAGCCTTGCCACTGAGAGGTGCATCACCTCGTATCTATTACTGTTTTTTAGGAACTTGCC-AAAGAAGCAGGATCTCTA-TTCACTGAGACATGTTTAAGTTTTCTTGGAGTTTTCATGTAAAACCTATTTCAGGGCAAATTTTGCCAT-------------TTTACATTCATTAGGGGAAAA------GAATCCTAGGAGGGAAAAACTGAAAAATAGTAAGTATTACCTTTTACAAATTCAGTGTTTTCAAAAAAAAGTATTTACCGCAAGTGCATTAAAAAAAAAAAAACTGTACCCTCTAATGCTTCTTTGAAAGTAACAATATTTAAAATAAAATCTTAGATAATTAGGTCATTTCAAAATATTTTCATTCAGGTTATGCTTGAGCTTCCAAATATGGAAAACTGGCCCTTACACAGGTCAATGTTAACACGAATGCATTTCAGTA--TTTTGAAGATAAAATTGGTAGATCTATACCTTGTTTTTTGATTCGATATCAGCACCGTATAAGAGCAGTGCTTTGGCCATTAATTTATCTTCATTGTAGATAGCATAGTGTAGAGCGGTATTTCCATACTCATCTGGAATATTCGGATCAGTGCCATGTTCCAGCAACATTAACGCACATTCATCTTCCTGGCATTGTACGGCCTGTCAGTATTACACCATAAACAAATTACAAATCCTAGGATTTCAAAAT-AACATTC-------CACAGCTTTCACCAA-CTAGTTATATTTAAAGGAGA-AAACTCATTTTTATGCTATGTATTGAAATCAAACCCACTTCACGCTGACATAGTTGGCT-ACTGCATACCTTTGTCAGAGCTGTCCTCTTTTTGTTGTCAAGGATATTAAGTTGACATCGTCTGTCCAGCAGGAGTTTTACTACTTCTGAATTTCCATTGGCAGAGGCCAGATGTAGAGCAGTCCTATGAGGGTGAGAAGACTTTTTAGGAAATTGTAGTGCACTAGCTACAGCCATATCAATGATACACATAATCGCAAACACTGAATAGCCTGCTATTACTGTGCCTTCAAAACAAACATTTAACTTTCCCATGA--AAAAAGCACA-CGATTTATTATCTCTCATTACTCGCTGTATTAATGAAagagcagcctatatg s mm3.chr8 102740914 1085 - 128923138 CTCCACACCTCCTC------TTCTTCAGCC-------------GTGGGTCACTTGGCAAT-----------------AACTTGCCCAAAGCATGGCGATTTTCATTTTACCTAAGGACTTTT--GTTGCCTTTGAGTGTTAACCTGAAGCCATGTCCAAAGTAAATGTTGCTGTCTACTAAGGCTGCTTTGCAAGAATCAGGGGGAAA-CGGTGAAAGAGCGAAAAAAAAAGACAAAAAATGAGGAAATTTTAACATTAACAAATTCAGTGGTTTCTCAACTA---TTTCACAGTAAATGTGC-----CAAAGAAAGTTGCACAT-CAAATATTTCTCTCAAAGTTCGTGTGTCCGAGCTCACTGCTTCTATGTTTAAGCCCTTTCCAAACACTTCCGCTTAGGGAACGCTTGGGTTTCTAAACATGAAACGTTGACTC-GGCCTCTGCCACTGTTAAAAC--ATCTATTCCACAGA-CTTTGAGATTAAAATGCAGTGAATTCTACCTTGGTTTTTTGTTCGATATCAGCGTTGTACTGAAGCAGTAGGGAGGCCATCTCCTGATGCCCGTTGTACACAGCGTAGTGCAAGGCACTGTTGCCACTGCTGTCTCTAATGTTCGGATCAGCGCCGTGCTCCAGCAGCACGGTCGCACATTTCTGCTTCCAGCATTGGACAGACTG-CAATTTATAACAAGAAACAAATGGTCAGCTCATGAAATTCAAGATAAATATCCC------CGCGGGAGTTGCCAG-CAAGCAATAGGTGATGGAGGCAAAGTTCTTTCCATTGTAAGCGCTTCAACCACATCTAGCCCATGCTGAAATTCATGGCTTGCCGCCTACCTTCATCAGAGGTGTGGTATGGTTCTTGTCCAAGGCATCGATCTCACAATTATTCTTCACTAGAATGGTCACTACTGGTAGCCGGCCATAGACACAGGCAAAGTGCAAAGCTGTCCTGTGGGGATGAGAGGAATTTTTGTGACATTGTAGAGCACTGTCCCAAAACCCA-CAATTATTGATGTGAATAT-AAGATTAAATATCATGTCATTCTTTGGTCTTCTAAGCAAATCTTCAATGTTCTTCTTGTTAAGGAGGACA-AGATTCACTCT----------------TATTAAAGAAATGGGATCCTATTTG s rn2.chr16 64607868 1094 + 84226546 CTCCATACCTCCTC------CTCTTCAGCT-------------ATAGGTCACTTGGCAAC-----------------ATCTCACCAAAAGCATCGTGATTTTCATTTTACCCACATGCTTTT--GTTGTCTTTGAGTATTGACCTAATGTCATTTCCAAGGTAACTTTTGCTGTCTACTGAGATGGTTTTACAAGAGTTAGGGAGAAAACAGTGAGAGAGTGGGGGGGAAAGGACAAAAATGAGGAAATTTTACATTTGTCAAAGTCAGTGGCTTCTCAACTA---TTTCACATTAAATTTGT-----AGAAGAAAGTTGCACAC-CAAATATGTCTTCCAAACTACAAATGTCGAACCCAACAGCTTCTATGGTTAAGCCCTTCCCAACCCCTTCCACTTGAGAATCACTTGGGTTTCTAAGTTTGAAACAGCAGCCC-CACTTCTGCCGCTGTTAAAAC--ATCTATTCCAGAGAACTTTGAGGTTGAAATGCAGTGGACTTTACCTTGGTTTTTTGCTCAATATTGGCTTTGTATTGAAGCAGTAGAGCCACCATCTCCTCATGCCCATTGTACACAGCGTAGTGCAAGGCACTGTTGCCACTGCTGTCGATAACGTTCGGATCAGCACCGTGCTCCAGCAGCAGGGTCGCGCATTTCTGCTTCCAGCACTGGACAGACTG-CGGTTTATCACAAGAGACAGATGGTCGGCTGGAGGAATTCAAGATCAACATCCCACATCCCACAAGGCCCGACAGGCGAGCCATATGTAGTGGAGGTAGACTTCTTTCCGTTATAAGCGCTTCAACCACACCTAGCCCATGCCGAAATTCACAGCT-GTCACCTACCTTTATGAGAGGTGTGATGTGGTTCTTGTCAAAGGCATCGATCTCACAATTATTGTTCACTAGAACAGTCACTACTGGTAGCCGGCCATAAACACAGGCAAAATGCAAAGCTGTCCTGTGGGGATGAGAGGAACTTTGGTGCCACTGCAGAGCGCTGTCTCAAAACCCA-CAATTACTTGTGTAAATTT-AACATTAAATGCCATGTCATTCTTCTGCCTTCTAAACAAAGCTTCAATGTTCTTCTTGTTAAGGGGGGGACAGATTCACTCT----------------TATTAAAGAAAGGGGATCCTATTGG a score=52026.000000 s hg15.chr22 14662787 590 + 49476972 aatacaaagagcatagcccttggatgacattcaacttgggctggaatcctacttgaagctctgtcactttctggctgttgcttagccttttgggg---------tctcagtttcctcatcaataaaat-aggaatgaaaatagtagctttctcacaggaaaccactgtaatgcttaaatgagactcggcacaaaagatacagaatagttcctaacacaaataacagctcaataattgttagat----attatGATTTTTACTAATACCACTAAAGACAACATTTGAATTAAGTGAGATGATACAAT---------TATACCTACA----CTTTCA-------------GGTGTGTTTTAA----ATATTAC-----------------------------------------------AGCTAACATTgtattttag--------tgattctgagatgatcattgtctccatgttgtctccactgaaataccacttacaattcatgattt------actataattggcggca--tttaaataattctcttattgagacataaaataatggggcatcatacaatctctggtgccttacattaagtagaatatgTTATAATGTAACAGGTCTGGGGCGGTTCCAGTCAGATGACCAGCATTTAAATTTTAGTTCTTAAAAGTACTATGGAATAAGAGAG s mm3.chr16 85003494 652 - 98986639 AATAAC---AGAACACCCAGTAAATTGAACacagcttatatttgaatccctctctaa--tcagttacttactagctacttcttgggatttctatgatctccaaaactcagtttcctcacccatatgat-gggaat--aaacaatagatatcttacatggtactgctgcgatgtttcagttcaaatctacacaaagcatgtaccagtgtttccagcac--ctgacagctcagcattcggtggataatgatgattatCCTTGCTACTGTTATCAAACACAACATCTCAACAAATACCAATCAAAGAATTCTACCTACTGTACAGATGCaa-tttttattcaaataagtttagtattttttaaaattatattGCCAAAGATG----------------TCCTCCTAACTCATTCTCCCAATAGGTAAGTTTGCAGGCCGGTACCACTGTGACTAC--CTTATTCTTCATTCACATTTTTGCATCTCTGGAATAATTGTAATGATTCATGACATTTTACAACTATAATTGGTAATATTTTTAAAT-------TTATGAATACACAAAATACAAGGTTATCATGCAGTCCATTGTACTTTACATCAATTGATATATGACACAAT-CCGTAAGTTCATGGAAAATCTTGT------ATC--TATGTAAATTTTAGCTCTTAAAATGAATTTGGATAAAGAGAT s rn2.chr13 96777479 625 - 105800825 AATAAC-----AACACTCAGAAAACTGAACACAGCTTATATTTGAATCCTTCT-----------------CTAGCTACTTCTTAGGGTTTCTATGACCTCCAAAActcagtttcctcatccatatgataaggaac--aaacagtaactgtcttacatggtgctgctgtgatgtttcagttcaagtctacacaaagcgtgtaaaagtgtttccagcac--cagacacctcagcatttggtggataatgatgattattCTTGCTACTGCTGTCAAATACAACATCTTAATAAATACAAATTAAAGAAT---------TGTACAGATACAATTTTTTATTCAAATAAGTTTACTATTTTTTAAAATtatattgccaaggttggccttgaacttgataattctcctaactcattctcctagtagttaagtttgcaggcCGG-------ATAACTACTACTTACTCTTCAttcacattttagcatctctggaataattctaatgattcatgacattttacaactataattggtaatatttttaaat-------ttattactgtacaaaata--------------agttcgttgcactttacaTCAAGCAATATAAAACACAAT-CCATAGGTTCATGGTAAATCTTGT------ATC--TATGTAAATTTTAGCTCTTAAAACAAATTTAGGTAAAGAGAT a score=22509.000000 s hg15.chr22 14663377 197 + 49476972 CTGAAGTGAAAACAAAAACAAATTTCTAAAATAAACCAATTCTTACTTTGGTTTTCAATAAACTTTAAGCCAAACAAAACTTGGAATTGAAATGAATAGCATGGGCTCATTTTTTTCAATACTTAGATTTATACAATGTATGTACATCAGATATTTCCAATCATTCATATTAGGATTTAAGACTGTTATAAATTTTC s mm3.chr7 25570852 172 - 134401573 CTGAA-TAACAACAAAAAA---------------------TTTTCCTTTGATTTTCAAGAGATTTTAAACCAAG-AAGACTCAGGGTTCAAATGAATAGGTCTAGCTC-CTCTTCTGAATATTCAGATCAATAGAATGTATGAGAGTCAGATAATCCCATGGATTTATGCCAGA-TTTAATACTGTCCTCATTTTTC s rn2.chr1 106525298 175 - 276301343 CTGAA-TAACAATAAAAAT-------------------ATTTTTCCTTTGATCGTCAAGAAATTTTAAATCAAG-AAGACTCAGGGTTCAAATGAGTAGGTCTAGCTC-CTCTTCTGAATATTCAGATTAAAAGAATGTATGAAAGTCAGACAATCCCACAGATTTAGGCCAGAATTTACTAGTGTCCTCAGTTTTC a score=1770.000000 s hg15.chr22 14663574 12 + 49476972 ---------TCTTTTTAAAAT s mm3.chr13 94930243 21 - 116242670 TAAGTAGCTACTCTTTACAAT s rn2.chr17 359436 21 - 93540836 ATGCTAGCTACTCTTTACAAT a score=18415.000000 s hg15.chr22 14664004 221 + 49476972 AGTTCTTAAAACAACTAAAACAGTCTTTATCCAAGACTTATACATTTTCAAAAGGGCAGTTAAG-GGTTG----TCTTTTACTATTTTCTACCTTCAGAAA------------TGCTTCTGT-----------------------TTGAAAGGAGGGAGGAGAAGCTTCAATTGAGATTAAGTCCTAATGCCCCAATTTTAAATCTCTCAGCTTGCTCAAGCCCAGCAGGCAAACATAAATGTTTTCAAAGATGGAAGGAT s mm3.chr16 85005127 209 - 98986639 AAATTTTGTAACATGTGA--------------------TATAATTTTACTAGAGGGTAGTTATGTGATTAATTATTTTTTACAATCTTCTACCTTTAAAACAGTTTTTGTATTTGTTTTTGT-------------------TCTTTTTGTAGAAAGGGAGAGAAAAGTTTGTTAAAATTAAGG---------CAAATTTTAACCTTCTTAACTTCTTGA--TTTGGCTGTGAAATATAAAGGTTT--AAGAATGGAAGGAT s rn2.chr13 96778639 217 - 105800825 ----TTTATAGCATGTGA--------------------TATAATTTTACTAAAGAATAGTTATGTGATTT----TTTTTTACAGTCT---ACTTTCAAAACAAtttttgtatttgtttttgtatttgtttttgtatttgtCGTTTTTTGTAGAAAGGGAGAGAAGTTTCTATTAAAATTAAGG---------CAAGTTTTAACTTTCTTAACTTCTTGA--TTCAGTGGTGAAATATAAAGGTTT--AAAAATGGAAGGAT a score=161820.000000 s hg15.chr22 14684418 1320 + 49476972 ACTGAGAAAAC---TGACCATTTTATTCATCAGAAGAAAAATTCAATGAACCTTTACTCACTGACAATAGTGAGAATCAGAATGAATGAATCAGA-ATGTCTGTCCTAACTACTCCCTCTGGTTCTACTTCAATTCCTGCTGCCTCCATATGGTTCATCAGTGTGTGGAAGATGAATGTGGTAAAACTGAAGTGGCTGCTTGTACTTGGA-GAACAACAACAATGCACTGAAAATTCACTGCTTAGAAGCTGTTGAAAGAGTTTGGCAATAAATACAACCTAATATTCACAATAAAGAGCAATGAT--------CTATAAGCCCATTTTCACATC-TATTGTAAAGGCCAACCATGTGTTTCAGCCAAAACAAACTGATTTTATTAATACAATGACCAGACATATATAAATAATAATATGAGTTTATTTTACCAGAGGAATTGGCTCTCACACTTGCATTCTATTGTAGGTTTTTACACTTATCCAATT-CTAACAAGAGTTGGATAAACTCAGGGTTTTCCTAAAATAACAATGACCATTCCTCACAAAAGAGTCACAAGCAAAGTCTACACCTGAAAATGTGTA----GATTGCCTTCCATGTCCTGTGTGCATTAAGAAACGT-TTTATTTTTACACCTGGTATACGGACAACATGGATGAATATGTTGGCTAATTAGAACAAGTTTATCAAGTTCTTTGAAACCCTTGGTAGACAAAGTAA----TTCAAGGATTCAGCCCAGATTAGTA---------GTGTGAA-AGCCTGCAACAAACCAAACTGTAGAAAAGTAATAATGTAAAT----ACAAATGTGATTTCAATCTCCGCTTGGCGACTGACCTCCCTCAGACCACTAA-ACTCTGTG-CATCAGATGCATTAACAATGAGACATTGGTCACTCACTGGGGAGGTGGGCATGGTGAAAACCTTTTTTTACCCATAGATCTG--GGGGAACTGCTGAAAAGCCTGAAATGCATTCAGTTGATGCACCAGACATCAGTTACTGAAGAAGCAGAGGCAATGAACTTCCCTTAACGTTGACCT-----AAGTGGATAAACGCATGGCAACATGCTGAGTGACTTCAACAATGCAGACACACTCAATGTCAAAATGCCACAGGGCTACCCGGTGCTGCAAGGCTGGGACTCGGTTTCCGTAAGACTGTCTTAAGGCAGTGAGATTTCTGATGGAAC-TGTGGACATAAGCATATGCCCCCATACGCCACTCCCACTACTCACTGT---AGGAACAGCAGTGTAACATTTGTCCCGGCTAATGATGACAAACAATCCCCAAG--TCCCTATGCAAACCAAGTGCTGGGGCCACA------CAGTGGCCTGAGCAACATACCTATG s mm3.chr9 24844444 1284 + 124467299 ACGAAGAAAACCTATAACC-TTTTGTTCATCCCAAGAAGCA--ATGTAGGTCTTAACTTACTGACAATAAGTAAAAACCAGATGAGTGAATCAAACATGTCTGGCCTG------------------ACTTCTGTCCCTGCTGTCTCCGCACCTGTCATCCGTGTGTGGAGGAAGACTG--GCAAAGTTCAAGTGACAGGTTGTCCTTTAAAGAGTAGTCACAGTACACCAAGAATTTATCTCCCAAAAGCTGTCCAAATTGTTCAGCTTTAGAAGCAACCTAATACTCACAGGAAAAAAAAAT-----------CTATAATCCCATTTCCACGTCTTATCAGAA-GCCTGTGCGTGGGTGTGAGCCAAGACAAAGTGCTTTTATTAATGCCACAACCGGACACAT-GAGATGATAACATATGTTTACTTTGCAAGAGATCATGGATTTCACACTTCCACTTTGTTGTGAGGGTCTAGGTTTATCCATGT-CTAACAAGAGCTGGATAAACTCAGGTTCTTCCTAAAATAACAATGATTATTCTTCACAAAGGGGCCAGAAACATAGCCTACACTTCAGAATGGGCAAACGGATTAATTCCCA--TCCTGTGGGC-TTATGCAATGCGTCCATTTTTAGACCTGGTAGATTAACATCAT---CAAGCATGCTGACCCGTTGGAACAAGCTTATCAA-TCTTTCAAAAGTCTAGGAAAAAAATATGAAGGCATCAAAGATTCAGTCCAGTCTACTGTGGCCTGCTGGATCACAAAGCTGAGAGAAAATAAGTTGCAGAAAAGTAAAAATATGAATTAAAAAAAATGTGATTCCAATCTCTGCTTGGTGACTGTTTTCCCTCAAGCCACTAAGGCTTGGTGCCATCAGATGCATTAATGCTGAGACACTGGTCAGTGGTATGGGAGGAGTAGATGA-------------------GTAGATCCGGAGGGGAACAAGCTATGAGCCTGAGACTCATTCAGTGAATGCTTCAGGCACCAGTGGCGGAAAATGCAGA-GCAATAAACTTCCTTTAGCATTGGCCTGACTGGAGGGGATAAA--CATAGCAACACGCTGAGTCACTTAAACAATGCAGAACAGCATGATGTCAGAATTCCACAGGGCTGCCCTGTGGTCCTGGGCTCCGGCTGGGTTTCCATGAGACTGTCTTCAGGCATTGGAGCTTCTGAATGAAC-GTCCAAGAGAAGCAGACCTCTGCGGCTCTTACTGAGGCTGTTCATTGT--TAAGAACAAAA-----------GTAATGGGGAATGATGATGGATGACCCTCAAGGATCACT----------AGAGCTGCTGTCACAGGCAGTCAGAAGGCAGAGCAA-----GCGTG s rn2.chr8 23660100 1292 + 127756414 AAGCAGAGAACCTGTAACC-TTTTGTTCATCCAAAGAA-----CTGTAGTTCTTAATTTACTGACAGTAAGTAAAATCCAGATGAGTGAATCAAACTTGTCCCGCCTG------------------ACTTCTGTCCGTCCTGTCTCTGCAACTGTCATGGGTATGTGGAGGAAGACTGTGGCAAAATTCAAGTGACAGAGTGTTCTTTGA-GAGTAGTCACAATGCACCAAGAATTTATCCCCCAGAGGCTGTCAGAATTGTTCATCATTAGAAACAACCTAATACTCATAGTAAAAAAAAAAAAAAAAACCAACTATAATCCCATTTCGACGTCTTATCAGAAAGCCTGTGCGTGGGTGTGAGCCAAGACAAACTGCTTTTATTAATGCCCTGACCGGACGCAG-TAGATGATAATATGTGTTTACTTTGCAAGAGAGCATGGATTTCACACTTCTACTTTGTTGTGAAAATCTGGGTTTATCCAGATTCTAGCAAGGGCTGGATAAACTCAGGGACTTCCTAAAATAACAATGATTATTCTTCACAAAGGGGCCACAAACATAGCCTACCTTTCAGAACGGGCACATGGATTAGTTCCCA--TCCTGTGGGC-CTACGCAATGCGGCCATTTTTAGACCTGGAAGATTAATATCAT---CAAACATGTTGGTGCATTAGAACAAGTTTATCAA-CCTTTTGAAAGTCTTGGAAGAAAATATGAAGGAATCAAAGATTCGGTCCAGTCTAGTGTGGCCCAGTGGGTCAC-AAGCTACGAGAATATAGGTTGCAGAAAATTAAAAATGTGAATT-TAAAAAATGTAATTCCAATCTCTGCTTGATGACTGTTTTTCCTCAGGTCAGTAAGGCTTGGTGCCACGGGATGCATTAATGCTGAGACACTGGTCACCAGTGCAGGAGAAGTGGGTGA-------------------GTACATCCGGAGGGGAA-GGGATATGAGCCCGAGATGCATTCAGTGGATGCTAAAGGCACGAGCTGCTGAAAGTGCAGA-GCAACAAACTTCCTCTAGCATCGGCCTGACTGGAGGGGATAAA--CACGGCAGCAGGCTGAGTTACTTAAGCAACTCGGAACAGCACGATGTCAGAATCCCACAGGGCTGCACTGTGGGCCTGGGCTGGGGCTGGGTTTCCATGAGACTGTCTTCAGACAGTGGAGTTTCCGATTGAACAGTTCAAGAGAAGCAGACCTCTGCGACCCTTACTGAGGCCATTCGTTGTAAGAGGAGGAGAA-----------GGTCTGGGGGATGATGAGGGAT---CCTCAAGGGTCACT----------AGAACTGATGTCATAGGCAGTCAGAAGGCAGAGCAA-----GTGTG a score=920.000000 s hg15.chr22 14685738 28 + 49476972 GGTAGTAACTATTGAGAAGACATTTCCA s mm3.chr9 24845728 25 + 124467299 GACAGGAAC---TGAGAAGGCATCCCTA a score=132922.000000 s hg15.chr22 14713468 1420 + 49476972 CTGGGCCCAGCTCCCATGTTTCT-CCCGCTTGGCTGCAGCTCCAGCCCTGCTCTGTCCCCC-GTAGCTTCCTGCCCAGCTCCACACTGCAGCCTTCCCAGCACCCAGAAACAGCACAAACCCCACAGAACTCCAGTGTCCCCTCCCCTAGTCCTTTACACACACCTGCTAAGCCAGGCCTGGGACCCACAGCTCCATCATGTGAGCTGTACACGGCCTGGCAGGTTGAGGTG-CTAGGTCACCCCTCACCTTTAAAAGGCCTCAGGTCATACCATTCATGCGTGCTC-TGGGGCCCTCAGAGCCC---AAGCTCCCAGCCTGAGGGTCTAGGGCTGAGGCCTCA------CCCGCCCATAGTCCTGCAGTG-ACCCCAGCTCTGTCATGAGTCCAGCCGGCTCCAGCCGGGCC-AGGAGCAGCTGTACTGGGACACGCTGAAGCAGCTGTCCAAGCACATCAAGCCCCTGCACCGCGTGGTCAACAAGATCGACAAGAGTGAAGGTGGGCTGCGGCCGGGGTGGGGGCCAGTGCCCTGGGGATGCCA-CCAGGCTCGTGTCTTATGGTCCCCTCTGCTGTCCCAGACAGAAAAAAGGACCTGAGCAAGATGAAGAGCCTTCTGGACATTGTGACAGACCTCTCCAAGCAGTGAG--------------TTT-TGC--------------CTACAGCCAACGTAGGGTCCACAAGGGCGTGGGTCGTCCAGCCATGGATGGGCATTTGGTGATGATGTGGGGTTAGCAAAGGCCCCAGGCAGCTCTTTGGGCCCTGGACAGAGGCCTCCAAGTCTCCAC---TCTGGTGTGTGCTGGGGCTTCGAGCCCAGGCTTCATCTTGGCCGGTGCCCAGCCTTTGCCCT--ACTCCTGACCACTG--CTGTGGCCCTCATGC---------TGGCCCATCACAGCCAGGTCTCATCCAGCCAGTAGTTGGGGGCCCAGCTTGCAGTG-ACCTGAACATCAGCTGGCCGTGATGGGC---CTGAGCATGACCTGGAGTTCTGCCCCTGACTTCCCGGTGACCATGGACAGGCGACTGCATCTCAGTTACCC-----------------CATTTGCAGCCCATGTGTGCT-GTCATGAAAATGAAACAAGACGGTGCTGGTGAGAAGCAGGTGGAAG---GCAGGGCCACCGGCCACGGGCTGCTGTGAGCT---------CGGGCAGCACCTCAGAACCGCATGGGCGTT--GGCCTATAC-----------------TTCCCTGTCACCTAAACTCAGGGTGTCCCCCCACCCCCGTCTAGAAGTGTCTCTC----------------------TGTTTTGCTTGTCTGGATAGAATGCCAGTCACTATTGGGTGGTCCTCCAGGCCTTCTTGAGTTGATTCTTCATTAGGGTTATAGGACTGAGCAG-GACAGGGACTGGCCTAGGTGCAACTGAGGCCTTTCCAGCCTGGTCAGGGTCCTGGCCACTGTCCCTTCTCTTGACCCATTGCCTCACTGCCAACAGGGATGGGCAGCTCCTAGG s mm3.chr16 81857977 1337 - 98986639 CTAGGCTCAGACC---TGCTTTTATTCACTTGGCTGCAGCTCCGGCCCTGCCCCATCTCCCAGCAGCTTCCTGCCTAGCCCTTCACCACAGCCTTCTCAGAGCCCAGTGACAGCACGCACCCCACAGAACTTCAGCGTTCCTTCCCCTGGACCTTTAAACACCCCTGGTAAGTTGGGCCTGGGCTGGGTAGGC----------AGCTTTACAA---------------GGTGCCTAAAT--CCCCT-TCCCTCCCAAGGGCTCAGATTGGGTAAA------GGGCTCATGGGACCCTCACATCTCCTGTGACACCTGCTCCACAGGTTGTAGCCATCCATCTTA------CCCACCCTGTCCCCTATAGTGAACCCCAGCTCTGTCATGAGCCCAGCTGGCTCTAGCCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAATTGTCCAAGTACATCGAGCCCCTGCGACGCATGATCAACAAGATCGACAAGAATGAAGGTAGGCT--AGCCAAAAGCAGGAT--------GGGGCCGGACACCCAAGGCCTGTTCTTAGTGT-CCCTTT-CTTTCCTAGACAGAAAAAAGGACTTAAGTAAGATGAAGAGCCTGCTGGACATCCTCACCGACCCCTCGAAGAGGTGAGTACTGGCCCAGGGCTTTGGGCAGGGCTGTGTTGTGCCACAGCTCACATAGGGTCCCCAAG----------------------------ACTTGGTGACAGTATGGATCTAATCAAAGGTCCA-ACAGCGCTCTGTGACCATGCCTGAGGCTTAGGTGACTTTACAAGTGAGGTGTGCAGGGAAACTTCAC---------CCCTCCCGGCACCTTTCCAGCACCCACCTT----------TCAAGGAGTTGTGGTTCTCACACTTTCACTTGTGG-CTGTCATAGCC-TGGCTCATGGGTCATAATGCTAGGTG-CTGGCTTGTAGTGTCCCCTCCCTTCAGCTAGACATGACAAGTTAGCTGAATCTGCCCTGA---TCTCTTCTTGGCTGCCCTCTGACCTTTGACAGACAGCTTTGTCTCACTCCCCC-CTGTGGGCTGTAGGCTCAGCTGTAG-CTGTGTGCACTAGTTGTATAGATGAACCCAAATGGAGCCTG-GAAAAGCTCGTGGATGTCAGTAGGCTGCCAGGCTGCCAACTCCTGCCCACCAGCCATAGATAGGGTGCTGCTAA------CACCGCTGTTCAGGGCTGTAC-----------------CTGCTGAGTGCCACGGCTCAG--------CACACCTTAGGCTCTGCCTGTCCTTC----------------------AGTGGTCACTG-CCGAATGGG--ACCTGCTACAGCTACTCAGTCTTCCAGGTCCTCTTAGGTTGAATCC---CTAGAGGCACAGGGCCAAGCTGTGGCACAAGCTGGTCCTGCTGAGAATGAGGCCTT-------------------------CTGTGCCTCCTGTT--------------CTGAAA----------GAAGCTAGTGGG s rn2.chr11 86203857 1371 - 88445885 CTAGGCTCAGACC---TGCTTTTATTCGCTTGACTGCAGCTCCGGCCCTGCCCCATCCCCCAGCAGCTTCCTGCCTAGCCCCTCACCACAGCCTTCCCAGAGCCCAGTGACAGCACGCACCCCACAGAACTTCAGCGTCCCTTCCCCCGGACCTTTAAACACCCCTGGTAAGTTGGGCCTGGGCTGGGTGAGC----------AGCTGTACAC----------------GTGCCTAAAT--CCCCTCCCCCTCCCAAGGACTCAGATTGTGTGAA-------GGCTCCTGGAACCTTCAGACCTCTTCCGACACCTGCCCCACGGGTTGTAGCCATCCATCTTACCCCCCCCCCCCCCGTCCCCTGTAGTGAACCCCAGCTCTGTCATGAGCCCCGCTGGCTCCAGTCAGGCTGAGGAGCAGCAGTACCTGGACAAGCTGAAGCAACTGTCCAAGTACATCGAGCCCTTGCGCCGTATGATCAACAAGATCGACAAGAACGAAGGTAGGCT--GGCCAAGTGCGGGGC---------GGGTAGGATG-CCAGGGCCTGGTCTTAGTGTCCCCCTT-CTCTCCCAGACAGGAAAAAGGACTTAAGTAAGATGAAGAGCTTGCTGGACATCCTCACTGACCCCTCTAAGCGGTGAGCACGGGCCCAGGGCCTT-GGCAGGGCTGTGCTGTGCCACAG--CACAGAGGGTCCCCAAG----------------------------ACTTGGTGACAGTGCAGAGCTAAGAAAAGTTCTA-GCAACTCTCTGTGACCATGTCTGAGGCTCAAGTGACCTTACAAGTAAGGTGTGGACAAAAGTGTCAA---------CCCTACTTGTACCTTTCCAGCACCTATCTTTCAACCCTGGTCAAGGATTTGTGGTCCTCACAC-TTCACCTGTGG-CTGTAATAGCT-TGTCTCATGGGTCACAATGCTAGGTG-CTGACTTGTAGAGTCCCTTCCCTTCAGCTAGACATGACAGGTTAGCCGAG--TGCCCTGG---ACTCTTCCTGGCTGCCCATTGACCTTTGGCAGACAGCTGTTTCCCCCACCCCCACCCCGGGCTCTAGGCCCAGCTCTAG-CTGTGTGCACTAGTTATATAGATGAACCCAAATGGAGCCCATGAGACGCTCATGCAC----GTGGGCTGCCAGGCTTCTAACTCCTGCCCACC--------ATAGGGTGCTGCTAA------CACCAGTGTTCAGGGCTGTACATGGATGTGTCTCCCTACTGCCAAGTGTCACAGCTCAG--------CACACCTTCAGCTCTGCTT-TCCTTCAGGAAAGTTCTCTCAGAGGCCTAGTGGTTGCTG-CCGAATGGG--GCCTGCTACGGCTACTCAGCCCTCCAGGCCCTCTCAGGTTAGGTCC---TTAGAGGCACAGGGCCAAGATGCGGCAAGAGCTGATCCTGGAGAGAATGAGGCCTG-------------------------CTGCG--TCCTGTT--------------CTGGTA----------GAAGGTGGTGGG a score=262029.000000 s hg15.chr22 14714931 2934 + 49476972 TCAGCTGAAGGGAGCTCCTGCAGAGGTTTCTGAGGGCCGAGGCCCA---------GTGG-CAGTGGTTGGGATCCCAGATCCCAGCCTGAGACCTGCCATGTCTCCCAGCCCTCCAGCACAGAGCTCAGCCCAAGTCCCCTCTCTCTGCAGGTCCCCTGAAGACCTTGCCAAAGTGTGAGATCACCCTGGAGAAACTCAAGAATGACATGGCGGTGGTGAGTGGGATGCTGGGGACCCCTGGGGGATCGGGGCTCCCTCAAGAGCTCCTGGGGGCACCACTGG-AGGGGCCTTCATGGTCAGGCTGGGTGGGGGCTGGGCCTGATCTGAGACCCTGCCCACCAGGCCTCTTCCAGGCCAGGTTTGCTGTGCTGGGCGGGAACGTGGGAGAAGTCAC------C--CTCTGTCTGTGGCCCCCGTGGGTGCCTCTGCCACCCGGTCCAGAGACAGCAGGGACTCTGGGGAGGACAAGGCTGTGGG-----------GGTGGGGATTATACCCAGGATCGGCCAACATTGTCTGCA--------CAAGGGTGGAGGCTAAGAGAGAGGCCTCGGGAATCTGGCTGTGAGTGAGGACTGGCCAGAGG-TAGGAAGGCCCCCTA-AATGGAGAACCCTCAGGTCCCGGGCTTCTGACCGTGCCCATCCTACCGCC-AG--------CCCGCTGCCCCTGGTGCCGCTGACCAAACAGCAGTACCTATGCCAGCAGCTCCTGGATGCTGTCCTAGCCAATATCTGCTCACCC-TCTTCAGCCATTCCCTGTACCGCACATTCGCTCCAGCCATGACTGCCATCCACGGCCCACTCATCACATACATCCAGCTGGGCTGGGCTTTACAGAGGGCGGATGGCCAGCCCTGGACCATGTGTGCCCACTG--TGGTCAC-CATGCTGCCTCCT-CACGTCCACAGTGGTGTGCACCCGGAAGCACAGGCTTGAGGACGATGAGCGGCAGAGCATCCCCAGCATGCTCCAGGGCGAGGTGGCCAGGCTGGACCCCAAGTGCATGATAAACCTGGACTCTTCTCGCTGCAGCAACAATGGCACCGTCCACCTGGTCTGCAAGCTGGGCGAGCGTCCAGG---AGGGCCAGGCCGGCACAAGTTAGGAAGCCTTGTCCACAGCACCAGGTCTCTGCCATCCGAGCCGGAGGGCACCGTGCCCAGACCCCACCCTGTGTTCACACCCCAGCAGGCTGTCTGCTTTGTCTTCACATACACGGAGCCCAGGACAGAC-TGGCCATGCCTCTGCCCCCACGC-----ACCCTCATCTCCCCAACACAGATACGGCTCTGCTTGCCTGGGGCCCTAGGGAGGTGACAGGCAGGACCTCTGGGCACCCATTGACGCAGGGCACTCTGGGCTTCAGG-----------TTTGGAAATCTGAGAGTCAGAGAGACATCCAGGCTTTGCCGCAAGCCTCACCAGAACCTCCCGGGGTGTGAAGAGTCCTGTTCGGGAGCAGGGCTGTGAGGCGGGGCAG----------------GCCAGG-GCTCGTCCGGGTCACAGGTACAGCCTTGTGTGTTGCAAACGACAAGGACCTCCCAAGTGTGCCACCA-----------TGTGCCCACCCACTACCCTGCCCAGAGTCCACTGTGGATGGACTGGCAGTGGCTATACAGTGGGCAGACCCAGAGGAGCTGTCTGGGGGCCCAGGGCAGGCAGGGGTCATTCTGGAAAACCAAGCTTCTAGTGCTGCAGGGACAGCCTCTGTGCCCCTCCCCGGCTCAGGCCCCTTCCTCCCCTCTTCTGGCTCCTCCTGTGTGGAATCTCTCAGGTTCCAGTGGTAACCTGAGAGATAGGAGTCTCTGCTCTTCTGTGTCCCTTTGCCCCTTCATCTTGTGTCCGGTCAGCTTTCCAGGGTGGCTGTGTTCAGTGGCTGAGGGGTGAGAAACCCT----ACGCCTCAAGGACAGACCCCGCTTTTCCCAGAGGCCACTAGGGAGCTCAGTGGAGCTGACAGGTCCTACCAGTAGCTTGGGCACACAAGACCCCATCTGGGTGAT-GTGTCTCCAAAGAGAGTCATGTTGACAGGAGTCAGTCTCCCTGAGCCCAGAGCTGGCACATAGCAGAGCCAGGGCTGGGTCCCCAAGGTTGTCAGAGGCAAAGCCTTGAGCTCCAAATCCCGTTCAGAT-TCAGTTCTTCACTGATGATGAGGCTCCGGGAGGAGAGCCTGATGGCCAGGCAGGCAGCGTGCAGGGATCCTCCTGGTGCTTCAGCCAGTCCTGGGGCTGCCACTTCCCAGAGCACTGCCGGGTGTGCAGGGC--GTGGGTGCAGCGCCAGCTGCCTCAG-GCTCATGCCCACTGTTCGGTTGCAGGCACCAACCCCTTCCTCAGGTCGATGCACCACCGCGTGACCTCCAGGCAGCTGCAGCTCCCGGACAAGCACTAGGTTACCACCTTGCTCAGCACCTGTGCCCAGAGCATCCACAAGGCCTGCCTCTCGGCTGCCTAGCCA----GGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGATGCATGCCTCCTGTCAGACACTTCTAGATGTTGGCGTCCATGGAGAGCCTGGAGTTAGGTTAGCTTTCCTCCTTTTCTCTCCTGCCTTGGGGATCTGCCAAATGAAATCCCACACTTGTACAG-ACTGATAGGTGCGCAGTGGAGTGTGCTGCCTGCAGGGAG--TTGGCTGTCTTCTTGGAGAAGGCACTCCA-TG------------TGACT---------------TCCTCCATGAAGCCAGA---CACAGTCC--CCAGCCACGATCCTCGGGCTGCTCTCACCACGGCCTGTCCAGGGTCCGGGTGCATCTCAGCAGCATGAGGTTGTGCTCAGGTTGTTGTTAGCGCGTCTTGTGTGTGCTCGACACACCCCTGCTGCTTTCTATA-GGAGAACACAGAGGACATAGGAAACCCTTCAAACACACATGGGACTCTCTGCTCACAGTTTTGGGTTCAGGCTGCACTGCTTTGGGCAAGTGGGGCACCCCCTAGGGAAGCCTCTGAGTCCAGGGCACA s mm3.chr16 81859474 2497 - 98986639 ---------TGGGATTCTTGTGACAGTTTCCAGTGGCTGAGGCCCAAGAAGCTACGAGG-TGGTGGTCGGGA--CAAGAGTT---------ACCTACCCTGT-------CCCTCCAGTAGA-TG-TTAGCTCATGTGCCCTCCCCTCAGGTGTCCCCTGAAGACCCTGCAAAAGTGTGAGATTGCGCTGGAGAAGCTCAAGAATGACATGGCAGTGGTGAGTGGA-----------------------------------------------------------AGGAGGCTTTCTGGTCAG---GAAGTAGCACTT---CTAAAGACAGGACCTGTC--------------------AGGGTTCT------------------------AGCCAC------CCATCCCATCCC-TGCATCTGCAGTTGTGTTTGGGCCCCAGCATGGGGGAGGGGAGCACTAGGATGGGGGAGAGGCCGCAAG------------GCTGGGAATCCATT--GAAGCGGCAGCCAGTGTGTGCGCTG-----TCAGGGTGGAGGCTTTAGGCAAAGCCTCTGGATCTTGAGTGCTGATGAG----GACCTGAGGTTTGGAAGACTCCTCAGAATGGATGAGGCCTTGAGCCCATACCACTGACCCGTTCTATTTTGTCTCTTAGCCCACACCCCCACCACCCCCAGTTCTTCCAACCAAACAGCAGGACCTGTGCCAACCACTCCTAGATGCAGTCCTGGCCAACATCCGTTCACCTGTCTTCAACCATTCCCTGTACCGCACATTTGTGCCAGCCATGATGGCCATCCATGGCCCACCTATCGTGTATGTACACTCAGGTTGAGCCTAGTGATAAGTAG-----CAGCCCAGAGGC-TGTGTGACATCTGCATAATCACTTGGGTCGCTTCCTCCAGGTCGCCAGTGGTGTGTTCCCGGAAGCGCCGGTTTGAGGAGGATGAGCGGCAGAGCATACCCAATGTGCTGCAAGGTGAAGTGGCAAGGCTGGATCCCAAGTTCCTGGTGAACTTGGACCCTTCTCACTGCAGCAACAACGGTACTGTCCACCTGATCTGCAAGCTGGGTGAGTGGCCAGGGTCGGGGGTGGGGTGG-----------------------------------TTTGCCATCCATGCTGGCGG--------------------CCTG----CTCACTG-----------CTGCTCTGT-CTCACTCGT-------------CATTCCTCAGGGTATCTCTCCCCCAACTCCCCAGATCCTCCAGTCCCCGACCC---TATGCATTTATTTATCT--TTCTTCACAAAAGT---AGCCGTGGTCCTGGGGCAACCATTG--GCAGCATTCTCTCTGCACAAGGTGTTTCCTGCCTTTGGAAGCCTGGGGGTGTAAGAGGCCTCTAGG-TCTGTAGCAGGCTTCATTGGAACCCTGTAGAGTGTAGAGAG-CCTTTTTAGGAGCAGGG--GTGAGGT-GGGCAGGGTTGTGTTGGTGTTTGCCAGGCTCTCAGCCAGGTCACATGAGCAG--TTTTGTGTCACAGATGATAAGGACCTCCCTAGTGTGCCACCACTGGAGCTCAGTGTGCCTGCTGACTACCCTGCCCAGAGCCCAATGTGGATCGACCGTCAGTGGCAATATGGTAGGTGAGCCTAGAGGAGCCATCCAGGGACCCAATG-----------------AACAGAGTAGGTT----GGACAGATGGAAGGGCCCCTGTG------------------------------TCTTCTG---CCGTTTGCGTACAAC------AGCTCCA--AGGCACCTGTCAAGTGGGGG------------------------------------------------------AGGGTTGTCACGTTCA------------TGACATTCCTTTGAAGCACTACAAAG------------TGTCCCAGGG--------------------------------CCACCAGTAG---GTGCTCATGTAAGTCTGTCTGTGTGAT--AGTCTCTTGGGTGAG-------AACAG---------TACCTGGGTTC--TATTGGCACATAGCAGGGAC-------------------------------CATCTGGGGCCCTAGACCCCATAGAAATCCCAGCTCTCAACTGAAAGTTTGACT------GGAAAATCCCATCACTGTG------GGGTGCAAGAGAC------------TAAGCAGT------GGTGTACCTTCCCAGAAGTGCTCTAGGAGC-CAGCCTAGGTGGTTGCTGCCTTGCCAGGCTCAGCACTCACAACTGCTGCTGTGTTGCAGATGCCAACCCCTTTCTGCAGTCAGTGCACCGGTGCATGACCTCAAGGCTGCTGCAGCTCCCTGACAAGCACTCGGTCACAGCGCTGCTCAACACCTGGGCCCAGAGCATCCACCAGGCCTGCCTCTCAGCTGCCTAGCAAACTGGAACTTCA-GGACTGCCAGCAGCC-CTTCTGGCTAAAGATCTCACGCCGCCTACCAGACATTACTAAGTGTTGGCTTCT-TAGAGGGCCTGG-GTTAGGTTAGCTTTCCTGCTTTTACCTTCTTTGGTGGGGACCTGCCAGCTG-TTTCCCATTCTTGTGCAGTATTGACTGGGCAGCTGTGAA----GCTGGCTGCTTGAGGGCCTGGCGGTTTCCCC--AGAAGGTTTTCCATTGGTTTGGTTTGTTTCGTTATTTTTTGTTTTTTGTTTTTGCAGAGGTCAGGCCCCACACTTCCTCCAGCC----TTTCTGGGCTTC-----------CATGCCCA--------------CTCAGCAGCATGAGA----ACTCAGGGCCCCATCAAAGCATCTC-----TGTTTTGCA-ATACATTGTACTCATTATGTGGAGAATGTGCAGGACATAGGAAACCCTC--ACTCTATACACAGTTCTCCAGTCACA--CTGGGGCTCAGGC-GTGCCTCCTAAGGCATGT-GGACACGTCACAGGAACACGTCTGAATCCAGGGCACA s rn2.chr11 86205233 2493 - 88445885 ---------TGGGATTCTTGTGCTGGTTTCCAGTAGCTGGGGCCCAAGAAGCTACCAGGATGGTGGTCGGGA--CAAGAGTC---------ACCTACCGCAT-------TCCTCCAGTGGAGTG-TCAGCTTGTGTGTCCTTCCTT-AGGTGTCCCCTGAAGACCCTGCAAAAGTGTGAGATTGCCCTGGAGAAGCTCAAGAATGACATGGCAGTGGTGAGTGGAG-ACCACGGACCC-----------------------------------ACCCTGCTGGAAGGAGGCTTTATGGTCAG---GGGTCAGTACTG---CTAAAG-CAGGACCTGGCTG------------------AGGATTGT-----------------GGAGAGAAGTCACTGCGCGCAGCCCCATCCCCTGCATCCACAGTTGCAGTCAGGCCCCAGCATGTGG-ACGGGAGCACTAGGATGGGCGTGAGGCTGCGAGTGAGCGAGTGAGGCTGGGAGTCCATTTGGGACTGACTGCCACTGTGTGCACTGCACTGTCAGGGCAGAGGCTCTCGGCAAAGCCTCAGGAGCAGGAGTATTGAGGA------CCCCGAGGTTCAGAAGACTCCTCAGAATGGAGGAGGTCTTGAGCCCATACCACTGACCCGTTCTATTTTGTCTCT-AGCCCACACCCCCACCACCCCCAGTTCTTCCAACCAAACAGCAGGACCTGTGCCAACCACTCCTAGATGCAGTCCTGGCCAACATCCGTTCACCTGTCTTCAACCATTCCCTGTATCGCACATTCGTGCCAGCCATGATGGCCATCCATGGTCCGCCTATCGTGTATGTACACTTAGGTTAAGCCTAGCAATGAGCAG-----CAGCCCAGAGGC-TGTGTGACATCTGCATAATCACTTAGGTCATTTCTTCCAGGTCCCCAGTGGTGTGCTCCCGGAAGCGCAGGTTTGAGGAGGATGAGCGGCAGAGCATACCCAATGTGCTGCAAGGTGAGGTGGCAAGGCTGGATCCCAAGTTCCTGGTGAACTTGGACCCTTCTCACTGCAGCAACAACGGTACTGTCCACCTGATCTGCAAGCTGGGTGAGTGGCCAGGGGTAGGGGTGGGG-----------------------------------------GCCAGTCA--CCAG-GG--------------------CCTG----CACACTC------ACAGCTTGTCCTGTGCTCACTTTT-------------CATTC-TCGGGCTGTCCCTCCCCCAACTCCCCA-ATCCTCCAGTCCCCGGCCC---TACACATTTCTCTATCT--TTCCTCACAAAAGT---AGCCGTGGTCCTGGGGCAACCATTG--GCAGTGTTC-------------------CTGCCTTTGGAAGCCTGAGGACATAAG--GCCTCTAGG-TCTGTAGCAGGCTTCATTGGGACCCTGTAGAGTGCAGAGAG-CCTTTTCAGGAGCAGGG--GTGAGGT-GGGCAGGGT-GTGTTGGTGTT-GCCAGGCTGTCAGCCAGGTCACATGAGCAA--TTTTGTGTCACAGATGACAAGGACCTCCCTAGTGTGCCACCACTGGAGCTCAGTGTACCTGCTGACTACCCTGCCCAGAGCCCGATGTGGGTCGACCGTCAGTGGCAATATGGTAGGTGAGCCTGAGAGAGCCGTCCAGGGACCCAATG-----------------GACAGAACAGGCT----GGACACATAGAAGGGCCATTGTG------------------------------TCCTCTG---CCCTTTGCCTACAAC------AGCTCCA--GGGCACCTACCGCGTGGGGG------------------------------------------------------AGGGCAGTCAAGTTCA------------TGACAGTTCTTTGAAGCTCTGCAAAG------------TGTCCCAGGA--------------------------------CCACCAGCAG---GAGCTCATATAGGTCTGTCTGTGTGATGGAGCCTCTTGGGTGGG-------AACAG---------TGCCTGAGTTC--TCTTGGCACATGGCAGGGCC-------------------------------CATCTGTGGCTCCAGATCCCTTAGAAATCCCAGCTCTTAACTGAAAGTTTGATT------GGAAGATTCCACCACCAGG------GGGTGCAGGAGAC------------TAAGCAGT------GGGGTCCCTTCCCAGAAGAGCTCCAAGGGC-CAGCCCAGGTGGCTGCTGTCTTGCTGGGCTCAGCACTCACAGCTGCTGCTGTGTTGCAGATGCCAACCCCTTCCTGCAGTCAGTGCACCGGTGCATGACCTCCAGGCTGCTGCAGCTCCCTGACAAGCACTCAGTCACAGCCCTGCTCAACACCTGGGCCCAGAGCATCCACCAGGCCTGCCTCTCAGCTGCCTAGCAAACTTGAACTTCA-GGACGGCCAGCAGCC-CTTCTGGCTGAGGGTCTCATACCACCTACCAAACGTCACTAGGTGTTGGCTTCT-TAGAGGGCCGGG-GCTAGGTTACCTTTCCTGCTTTTACCTTCTGCCTTGGAGACCTGCCCGCT---CTCCCCATCTTGTGCAGTATTGACCAGGCAGCTGTGGA----GCTGGCTGCATGAGG--CTGGGGGTGTTCCC--ACAAGGTTTTCCATTG------------TCGTT---------------TTCCCCCAGAGGTCAGTCCCCACACTTC-TACAGCC----TTTCTGGGCTTC-----------CATGTCCA--------------CTCAGCAGCATGAGA----ACTCAGGGTCCCATCAAAGCATCTC-----TGTGTTACA-ACCCATTGTGCTCAT-ATCTGGAGAATGTGGAGGACACAGGAAACCCTC--ACCATACATACGGTTCTCCAGTCACA--CTGGGGTTCAGGCTGTGCCGCCTAAGGCATGC-GGACACGGTGCAGGACTCAGTCTGAATTCAGGGCACA a score=41389.000000 s hg15.chr22 14719442 468 + 49476972 GTGTTGTAGATATG--CATGTCCGCTTTTTAACTTTGAAAG---ACAGCCTGTTTACTTGGACATTTGTATTATGGGTCCACAGTTGGTACACAGTCTACTATTTCTATGT-TATATATATGTTTACATAAAGGCATTCATGTCAAAATCAGA-TAGTTT-------------TGTGT-----------------TCTT--TTAAAGAAGAA---------AAGGAAGGAAATATGTTATAATAATAG-GTGATATTAGATCTAGAATATAATTGTTGGATTTTTGGTTGAAA------AACATCTATGATT----ATTTTAAT---TCATCCTATGTCTCTGTAATGGAAACATATTTTCCATAAGTTTTACCTTTCTCTGAATTCTTTCTGTTTTATGAATGTTCTTCAGGCA-------AAATGCGTGCATTCTG-TAACTCAAAAGAGATGGAGTGCCATCGAAGGAAAAAGCAGATTTTACAATTAAACTAGTAAAT-ACAGAGATTGTCTAGATAAcatatttcattaattct s mm3.chr11 80209106 474 + 122862689 GTGATATAGATATAGTCATCTTCAGTTGT------TAAAAGAAAATAGCCTGTCTACAGAGACATTTG--CTATGGTTGAATAAAGGCTTCATAGTCTGCCATCCCTGTATCTTTCTATGTACTCAC-TGTAGGCATCCAGGTCAAAAGTAGA-TtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtTAGTTAAAGGAAAT----------AGACTGGAGAGG---------GATAGAGCGACAGTGAATCAAGAATGCAATTGTTAGA-TTTTTTTTTAAATCGACTAACATTCGGAATT----ATGTTGAT---CTATACTA--TCTCTGTAATTGAACTACATTTTCACCAG--------------------AGTTCTGTTTTATGAATATTCTT-AGGCAAAAAGACAAATGCATGCATTCTATTAACTTAAA-GAG--GAAATGCCGTCAAAATAAAAGAGCAAGTTCCTAACTAAAGCCATGACT-GCAGAG-TTGCCTACAGAGACTGTTTCAGCAGCTCT s rn2.chr10 61842211 486 + 106208427 ------GTGATGTATTCATCTTCAGTTGTTAACTGTAAAGGAAAATGGCCGATCTACAGAGACGTTTG--CCATGGTTGAATAAAGGCTTCATAGTCTGCTCTCCCTGTATCTTTATATGTACTCAC-TATAGGCATCCAGGTC-AAAGTAGATTTGTGTGCGTGTGCGTGAATGTGTC----------------TGTTGGTTAAAGGAGATTTATTTTATGAGACTGGAGAGAAGGTAGAGTGACAGTGTGACAGTAAATCCAGAATGCAGTTGTTAGATTTTTTTTTTAAATTGACTAACATCCAGAATTAATCATTTTAATCAACCATAATA--TCTCTGTGATTGAACTACATTTCCACCAG--------------------TGTTCTGTTTTATGAAAATTTTT-ATGCAAAAAGATAAATGCGGGCATCCTA-TAACTTAAAGGAG--GAAATGCTGTCAAAATGAAAAAGCAAGTTCATAACTAAAGCCATAAATAGAAAAG-TTGCCTACAGAGAATGTTTCATGAGTTCT a score=109241.000000 s hg15.chr22 14719912 881 + 49476972 ggagcacttatttttactcttctctgaaattgggagtgtatcgtattttagatggtgtcttacaattgacagtgtgttttcattccttttgggacatcaaataatgctgcatcttaaaacggacaatactgtagagtctgtgaaataCTTGCGTATATGTGTGGGG----AGTGTTTGTTAA--TGAGTTACCCGGTGTGGAGATTTGTGAGAACTATAGACCAAATATTTTTTCCCTTA-TGTTTTTACATTTTGGAAAATAGTTTTTTAAATAGGAGGCTTTTTACAACCTGATATTAAGCTTTGAGTATTGTAGTAGATTTTCAT--------TGTTTCATTAGATTG--ATTAAAAAATAATATAAATGGTGCAAAAACAATTTCCATTTT--GTAAGCTTAATAATACTGACCTTATGCTTACTATTGAGTGTTTCTACTTATACCACACATTTGGTAGTATAAAAATAGCTTTTTTCAAAGTTTTCTCATAATAAATTTCTTTTAAAAGGTTGGATAGCTATTATCCTGAGTCTTATGTCT---------------GATACCATGTTTTTGTTTTGTTTTTAGAGTCTTATATTTAAAGAAAAAGTAACAAGCCTTAAATTTAAAGAAAAACCTACAGGCTTGGAGACAAGAAGCTGTAAGTATCTTCTCTTGTCCATGGTGAAACTAATTCATGCAGATCCAGAGCTCTTGCTTTGTGTAAGTGTTTTTTTATGAAATACGTCAAAATTACCACACTAAGTTCATTTGGTTTAACTGAAACGCCAAGACCTTGAGGGTAATTTTTAGCTCAAGAGCACTTACTGATCCTTTCTGATCGTAACTGAAAACTAAGACGTCTCTAAGAAACCTAATGTATAATGAATACTGATATAATTAGATCAGATTCT s mm3.chr11 80210260 825 + 122862689 aaAGAACATACCTTTACTTCTATCTGAAAGTGGATGTTTATTTTCCTTTGTGTGATATC-GAGGATTCACAATAGTTTTTCATTTCTTTTAGTCCAGCCA--AGTGATGCATCTTACAGTGTATAG-----------------TGTATTTGTGTATGTGCATGTGATATAAGTATTTGCTAATTTGAATTCTCTAGTATGTATATTCATGTGTGATATAGATACATTATTTTTCCTCTTACTATTTTCATATTT--GAGAACCAGTTTTTGAACCCAAGAGT-----CAACTTGATATTATGCCTCTAGTGTTTTAGattattattattattattatatattactaGATTGTTATATAAGAATGATATAAATGCTATAAAA--------CATTTTTAAAAAAT---GCAATATTAAATGTATGCTTGTTAGCTTATGTTTCTACCAGTATCATACATTTGGTGGTAT-GAAATGTTTTTTTTCAAAGCATTT---TAAATAATTTCTTTTATAAAGT---ATAGCTATTATTCTGAATCTGATGTCTGATTGTTTCTAAGGTGATGCCATGTTTTTGATTTGTTATTAGAGTCTCACCTTTAAAGAAAAGGTAACAAGCCTTAAATTTAAAGAAAAGCCTACAGACCTAGAGACAAGGAGCTACAAATGTCTTCTTTTGTCCATGGTGAAACTGATTCATGCAGACCCAAAGCTTTTGCTTTGTGTAAGTA-TTTTTAATGAAATGCTTTGAAATTATTCCACTAA-TCTATTTG----AACTGAAAGGCCAA-------------------------------------AATACATTTAAATTATGAGTAACCTCTAAAACATTGCTAAGAAAGCCAAT-TCCAG-GAATTCTAATATACTTAGATCACATTTT s rn2.chr10 61842697 822 + 106208427 AAAGAACATACTTTTACTTCTGTCTGACAGTG-ATGTTTGTTTCCTTCTGTGT-ATATC-TAGGATTCACAGTGGTTTTCCATTTCTCTTAGGACAGCCA--AGGG--GCATCTTACAGTTGATAGGGTTGC--AGTCCGTAGTGTATTT-TATCTGTACATGTGGCATAACTATTTGCTAGTTTGAATTCTCTAGTATGTATATGTGTGTATGATATAGATACAGTATTTTTCCT--TAGTATTTTCATACTT--GAGAATCACTTTTTGAACCCAGGAGT-----TAACTTGATATTATACCTCTAGTGTTTTAGATTATTATTAA---------ATATTACTAGATTGTTATATAAGAATAATATAAATGCTATAAAAA-------CATAAT--ATAAAT---GCAGTGTTAAATGTATGCTTATTAGCTTATGCTTCTACCAGTATCGTACATTTGGTGGTGT-GAAATGTGTGTTTTCAAAGCATTT---TAAATAATTTCTTTTATAAAGT---ATAGCTATTATTCTGAATCTGATATCTGATTCTTACTAAGTGGATGC-ATGTTTTTGCTTTGTTATTAGAGTCTTACCTTTAAGGAAAAGGTAACAAGCCTTAAGTTTAAAGAAAAGCCTACGGACCTAGAGGCAAGGAGCTACAAGTATCTTCTTTTGTCTATGGTGAAACTGATTCATGCAGACCCAAAGCTTTTGCTTTGTGTAAGTA-TTTTTAATGAAATGCTTTGAAATTATTCCACTAA-TTTATTTG----AACTGAAAGGCCAA-------------------------------------AATCCTTTTAAATTATGAGTAACCTCT-AAGTATTGCTAAGAAAGCCAAT-TCCAGAGAATTCTAATATAATTAGATCACATTTT a score=45798.000000 s hg15.chr22 14720867 256 + 49476972 AACTAAGCTTCTCTAAGCTGGTATTCATTATGGGAGAATGCCGTTCTTAT-GTCTGGTTATATC------------TGCATTAGGTTATTGTTGATGCTAGTGACAATAAATTTTATGTTACTGCAGCTCACAAGTGTATTTTTACATCTGCAAGAAATTAACTAGTCATTAAATGCTTAGTAGCACAGAAATTCTCAAGTGGTTGCAGGAAATTTTGATCTGCAGGAATAAATTTTTTTCTTAAAAATAAGATAAACGAAATGACATC s mm3.chr11 80221870 252 + 122862689 AACTAAGCCTC--TAAACGTACACCTACTATGAAATA-TGTCACG-TTAT-GTATGATTACGTATA----------TGTATTAGGTTCGTGATGATTTT-GTAACAGTGAACTTTATGTTACTGCAGCTCACAAATGCTTTTTTACATCTGCAAGAAATTAACTAGCCATCAAATGCTTAGTAGCACAGAAATTCTCAAGTGGTTACGGGAAATTCTGATCTGCAGAAATAAA-TTTCTTCTTAAAAATAAGGTAAGCACAGTGACTTt s rn2.chr10 61853759 265 + 106208427 AACTAAGCCTTG-TAAATGTATACCTATTATGAAATAATGTCATT-GTATTGTATGATTATATATAATATAAAGTATATATTACATTCTTGATGACTCT-GTAACAACGAACTTTATGTTACTGCAGTTCACAAATGCTTTTTTACATCTGCAAGAAATTAACTAGTCATCAAATGCTTAGTAGCACAGAAATTCTCAAGTGGTTACGGGAAATTCTGATCTGCAGGAATAAA-TTTCTTCTTAAAAATAAGGTAAGCACAGTGACATT a score=36163.000000 s hg15.chr22 14721159 533 + 49476972 GAGAGATTAAGAAAGTGTTTTATAGCCAAATTAGTTTCTATTTCAGCTCCTCCTTCCCCCCAAGGTTCTCAAAAGGATATATATGTGCAGAGGACAAGGGCTGGCAAATTAGCATTTTAAAAATTATTCTGAAGCTTTGGCCGTAAAACCACACTGTTGATGAATTCTAGTTCTAGTTTGAGTTAAATAGGTCTCTATGGGACAGGCCTAGGAAAAGTGGGGGCTGCTATAACCAAAGTAGCTTGAGGAGCATATTCTATCTTTACTCTCAAGTTCACACATAGACATAATTCATACGTAAAATTTAACATATAGCTTCTATAATTAATCTAAGAATTCTATTATGGCATAGATTTGGGAGTACTTGATTTAATGAGTTTTTTGTCCAGTTCTAGAATCATAGCTCTGAGAAATCATAAAGGCCTAGATGTCGTGGCTAGACTAGTCCAGAGAATTATCTATCAAGAAGCAAAAGGGAAAAGGTTGAGGGTCCTCAATCTAGGTT-TATTTCTATGCCTCCAATAAGGGTTTCA s mm3.chr11 80222675 369 + 122862689 GAACAAGTTAAAAAGTTTTTATTAGCTAGATTATATCCTACTTCAACTCCTCA--CTCAATGACATACTTAAGAGAA-ATGTAAGTACAGAAGGTATTATCTGGTAGTCCAACATTT----AAATATTCT-AGGTTTTAAGTTGGTAAATGGAAGGTTAATGAATTCTAG-------TTGACTTAAGTAGGATTC--TGGGTCAGGCCTATGAAGAGTAGAGGCTGCTGCAATCAAAGATGTCTCAA-ATAGTGTTTTCTCTTTATTTTTAAGTCCTCAT--------------------------------------------------------------------------------------------------------------------------------------------GACTTGGCTCTCGGAGCTAATCTAGTCCGGGAAATAATCTTTCAAAAAGCTAAAGGGCAGAAGTT-------TTAAATTTAGGTTAAACTTGTATGTCTCCCTTAAAGATTTTG s rn2.chr10 61854418 365 + 106208427 GGACAAATTAAAAAATTTTTATTAGCTAGATTATATCCTACTTCAATTCCTCC--CTCAATGAAGTACTTAAGAGAA-ATAGAAGTACAGAAGGTATTATCTGGTAGTTCAACATTT----AAATATTGT-AGGCTTTGAGCTGATAAACTGAATCGTAATGAATTCTAG-------TTGACCTAAGAAGGATTC--TGGGTCAGGCCTATGAAGAGTAGAGGCTACTGTAATC--AGATGCCTCAG---AGTGTTTTCTTTTTATTTTTAAGTCCTTAT--------------------------------------------------------------------------------------------------------------------------------------------GACTTGGCTCTGAGGGCTAAGCTAATCCAGGAAATAATGTTTCAAATAGCCAAAGCGCAGAGGTT-------TTTAATCTAGGTAAAATTTGTATACCTCCCATAAAGATTTTG a score=46022.000000 s hg15.chr22 14721692 514 + 49476972 CATCTT----GAAAATTTCACGACACTTCTTG-------GGGTGGAGTGAAATTTTTTGATTCTGCACTATTGAAACATGGTGAGGTTGTGGCAGATAGAGAAGAGTCTTACATTTCTTTTAACATATAGTTTCTATAGTTAATCAATTTAGGA--ATTCTATTA---------TGGCCTAGTTTTAGGAGTACTTGATTTAATGAATTTTTATCTGGTACTAGAAGCATAGCTGTGAAAAACCTTAAATGTATGAAACTCATATCCTTTTCAGTATTATACAGCTTGTTATTAATAAATTGTCTCTGTTTAGAAATAGACTAATGGTGAAGTGGGTTTATTCACATCTGGCTTATTTGATGTGTTAATGTAGCTGAATTTGGCATTATTCCAAAGATTGGAAAGAGATTAGACTTCAGACTTTCGTGCCCTTGCCTATGGCATAATCTC---CAGAAT-ATGAGTATGAGGAATCCAGTAATGAATTCGTAGTGCCCTGGTCAGCACAGTCACTCTTGTGATATAGTTGGTGTATATAC s mm3.chr11 80223218 459 + 122862689 CATCTTTTAAAAAAAGACCAGGAATCttttttttttttaaattagaataaaattttttGGTCCTGAACAGTTGAAAC--ATTGAAGTTCTGGGGAACAGGAACGAACCTAACGTTTCTTTTAACATGTAATTTTTATAATCAAT---TTCAAGGTTTTTCTATTATGACATAATTGACATAATTTAAAGAATACTTGATTTAATTAATTTTAATCCAGGCCTAGAATTATAGCTATAAGAAACCT-----------------------------TACCAAGCATCTTG------ATACAAT---TTTGTTTAGAGGACTGCTGATGGAGAGGTAAGGTTATTTGTATCTGGCTTATCT--TGTGTTTATGTCACAGAACAAAGT-TTGTCCTGAAGATT---------TTAGACTTAAGAATTTTGT------GCCTTTGGCATATTGTC---TAGCATGGTCAGTGTTAGTAATCTAGTAGTGAATCCGAGGTGCTTTG-TGAGGG--------CTGGAGAGAGCACT--------CAG s rn2.chr10 61854977 424 + 106208427 CATCTTTTGAAAAAAGATCAGAAATCTTCTTTT------AATTGGAATACAAATTTTTGGGCCTGAACTATTGAAACATATTGAAGTT---------------GAACCTAATATT--TTTTAACATGTCATTTTTATAATCAAT---ATCAAGGTTTTTCTATTA---------TGACATAGTTTAAAGAATACTTGATTTAATGAATTTTTATCTAGGCCTAGAATTATAGCTATAAGAAACCT-----------------------------TACTAAGCATCTTG------ATAAAAT---TTTGTTTAGAGGAGTACTGATGGAGAGGTAAGGTTATTTGTATCTGGCTTATTT--TGTGTTTATGTCACAGAACTAAGT-TTGTCCTG-----------------------AAGAATTTTGTGTGCTGGCCTTTGGCATACTGTCTAATAACATGGTCAGTGTTAGT-GTCTAGTAGTGAATCTAAAGTACTCTGTTAAggg--------ctggagaaatagct--------cag a score=79566.000000 s hg15.chr22 14722208 758 + 49476972 GGGTTAATTACTGGTCCAGAAGAACTTAATCTCAAGAGTCAATTTCTAGTTATCCCAACATGGCACGGATAAAATCTTGCAGAAAAAAAATCTTTGTCATTGAGACCAAATTATAGTTTTCATACAGTGGATTTACATTGTTGATGTTTTACTTAT-GTTTATGTTAGACTTACTTTATATTTGTAGAATCTACTGTTTCTGATTATTTAGAGAATGGGAAACTGAAAGAAATTTTAAAGA----CATTAAGTGAACATTATTTGTTCTAATGGGTTTCTAGTGAATTTCCTTCAAGGTGGGGCATAGAGATTGAGAGGAGAGGTTTTCTAGGAGAGTCTCAAA-CAGGAAGACAACCGATA-TAAGTGTTTATTCCTCTTGGTTGTCAGTGCGTCAGTAAAGCTTCTTTCCTTCTTTTTTCTAGCAGGCAGATAGAAGTTCATGTCACTTTCTCCTTTTTTATGGAGTAGGATGTGATACTCCTTCTAGTGGAAATACCAATCAAATGTCCATGGGTCATGAAGTGTCACTA------TGTACTCCT-GAGCCTCTCTCCAGAAGGGAAAAGGGAACTCCTCTATGGTCTG---CTTCTTTTGTAATTTTCCTGTAT----CATCTCGTGTGCTCTATTTGTTTTCTGAATGAACTTTGGTAAATTTCATCCAGGTAATATAGAGTAATAGTGAAaaactgcttagactctagttctatcactgctctttatggaattttgggcaagttcttaacatccttgttcctcaattcctcaa s mm3.chr11 80223679 646 + 122862689 ------------------------------------------GTGCTGAGTACCCCGACAAGGCAAAACTGTAATC-TGTAGA------------TTCGTAAAGTC----TTACAGTTTTCTTGTGATAGATTT----------TACATCA----TCATCTATATTGTACTTG--------------------------------GTTTGGAGGTTGGACAACTGAGAGGTGTTTGAAAGAAAGATAGTGCACAAACCTTATTTACCACAATGGG---GTAGTGAGTGCTTCTAACGGGAAAGCTTT-----TGGAGAGA-AGGTTTTCCAGGGCTGCCTTAAAATAGAAAGTCAGTTCCCACTAAGCACT-----CTGTCAG-TGTCATTGCTTCAGGAGGAT------ACGTCTTCTTTCCAGCAGGCAGATAGAAGCTCCTGTCATTCTCTCTACCTTTATGGAGTAGGATGTGAAATGTCTGCTACTGGAAATACCACTCAGATGTCAGTTGATCATGATGAGTTCCTGCGTGCCTGTACTCCTGGAGCATCTCTGCGGAAAGGAAGAGGGAATTCCTCCATGGTAGGTAACTCCCTCTGTGACTCTCCTGTAT----CATCATCTCTGCTCTTC---CTTTCTGAGTGGATGTTGGTAAATTTCGATTAAATAATTTAGCACATTAGTTAcagactgctcagaatttagttgtagtgctgctcactgtggaaccctgagcaaattcttcataactctgtgccttagtttcTCAG s rn2.chr10 61855847 652 + 106208427 ------------------------------------------GTTCTAATTATCCTGACAAGGCAAAACTGAAATC-TATAGA------------TTCATAAAGTG----TTACAATTTTCTTATAATAGATTT----------TATTTCACTAATCATCTATATTATACTTG--------------------------------GTTTGGAGGGTAGACAACTGAGAGGTGTTTAAAAGA----CAGTACACAAACCTTATTTACCACAATGGG---CTAATAAATGTTTCTACAGGTAAAGCTTTGGAGCTGAGAGGA-AGGTTTTCCAGGGCTGCCTTAAA-TAGAAAGTAGGCTTACACTAAGCCCT-----CTCTTGG-TGTCATCACTTCAGGAGAGT-------TTTCTTCTTTCTAGCAGGCAGATAGAAGTTCCTGTCATTCTCTCTACCTTTATGGAGTAGGATGTGACCTGCCTGCTAGTGGAAATGTCACTCAGATGTCAGTTGATCATGAGGAGTCACTACGTACCTGTGCTCCTGGAGCCTCTCTGCGGAAAGGAAGAGGGAATTCCTCCATGGTAGGTAACTTCCGCTGTAACTTTCCTAGATCGTCCATCATCTCTGCTCTAT---CTTTCTGAGTGGATGTCGGTAAATTTCAA-TGGACAATTTAGTACATTAGTTAcagactgttcagaattttgttgtattgctgcccactgtagaaccctgggcaaattctttacaactctgtgcctcagtttctcag a score=13411.000000 s hg15.chr22 14723202 416 + 49476972 TTGTGTGTATAATTTCCTTTAA-ATATAAATCATATTTCAAGTGAAAATATCGGGTCATTACAGAAGAGTTTATTTTCCAAACCAAAACTTTTTTCATCCCTAATTTTTAATATAG---CCTTGTTAAAGAAAAAAAATC--TAAGCAGTATGCTATTTATTATTGTCTGTTTTACTTGCAGAATTTGAA---TGTATTTTGTCAATTATTTTCTCCATTTCATGTTTGGGGAATAGGTCATTCAGAATCAAGTCTATCTTC-----------TACAGCAATATTTTGTTCTTGTTTATGCCCTTGTTTCAATGAGT---GTCGCAGTGTACTTATTTTATTACTTCCCTAGAGCAAGTAGATAGAATTTCCTGTTACTTCCTCTGTTTTTGTCATTTGTAATTGACTGGGAAGTACATTATATAGTTACTGCAGTAGA-------- s mm3.chr11 80225367 338 + 122862689 TTCTGTATGTAAATGTCCTTAA--CATAAATCAAAATATGAGCAGAATTATAAAATCAT-ATGGAAGGTTTTGTCTTTCAGACAGAGAGCCTTGTTATGCTTAAGTTTCACTGTATGTAGCCTGTTGAGGCAGAAACCTCAATGAGC----------------------------CCTGTAGGAGCTGCAATGTGTGCTTCGCC------TGTGTCCTTGGCA---TTGG---------CTTTC-----CAAGTGTTTCTGC-----------CTCAGTGTTAGTTTG--------TGGGTCATTGTTTCAGTCAGT---GCTTCCGGGTGTTTGTTT-----CTTCCCT-----------ATAGA--------------CCTCTTCCTTTGTCA-TTATGGTTGACCCACAAGTGGATCAGTT--TTACTGCATTGGACTCTCTGT s rn2.chr10 61857608 311 + 106208427 TCCTGTATGTAAATGTCCTTAAAACATGAATCATAATATGAGCAGAATTATGAAATCATTATGGAAGATTTTGTCTTTCAGACATAAAG-----------------TTTACTATAG-----CCATTGAGACAGAAACCTCACTGAGC----------------------------CCTGTAGCAGCTGCA-TGCGTGCTCTGCC------TGCATCCCTTGCA---TTTG---------CTTTA-----CAAGTGTTTGTGGGAGTCTTTGTGCTCAGTGTTAGTTT-------------TGGTTGTTTCAGCCAGTAGTGCTCACTGTTGCTT----------------------------------------------CCTCTTCCTTTGTCA-TCATGGCTCACCCACAAGTGGCTCCATT--TTACTGCAGTGGACTCGCTGT a score=534.000000 s hg15.chr22 14723618 28 + 49476972 ---TTTATGTTATGGTGTTTTACCTGTCCGT s mm3.chr11 80225705 30 + 122862689 GTCTTtttgtt-tgtttgtttgtttgtttgt a score=236218.000000 s hg15.chr22 14723646 2013 + 49476972 GTTAGAATCGGTTTCCATTTCTGGAATCTGGAATAGGATAATACCTATTTTATTTGAAATTGGACAGATAGTAGCTTTATGTTGGTCCAGATAAT--CTCATTT---CTCATTTGGA-CAAGATATTTTGGGGTTTGAAAAATTCATATAATGATTAAAGGAGAAAGCTCTTATGAGTTATTGTATGCTGAGATATATGTGGACACACACACACACACACGCAGTTTATTGCATTGTTGGGTTTTATACATAAAATTACCCAAGTTGCAAATATATGTCTACCACCCTTGACTCTCAGGATAGTGCAGCAGGATGCAGCGGAACCCCCCTGACTTGCTGACAAGCGCAGACCAGTCTAGAAGTGGCCCTGTACATGTTTCTGCGGAACCCTGACACTGAAGCTGTTCTGGTTGCCATGTCCTGTTTCCGCCACCTCTGTGAGGAAGCAGATACCCGGTGTGGGGTGGACGAAGTGTCGGTGCGTAACCTCTTGCCCAACTCTTAACACATTCATGGAGTTTGCCT--GTCAGCAATGTGATGTCAACAGGTAAATATGAATAGTGGTTTTTTTACT---------------CAACCTCCCTAAAGCACATGGCATCTGATTGT--------GAGAATGTATTTAAGATTACACTTCTGTAAGTTTACAGGAGAAATTCAAGTAGCTTACTTGAAATCCTTTTCTGAACAAAGTAAGATGAAAATAAAAAGCGTTTGAAATAAATTGTTAGTCTCCCACTGAGTTTTTAATGTGCTATAGATTTTAAAATTAACTGGCAGTACGTGTTACTATCAGTTAT-GACTATGTAATTTACGTTTGTATGACTATGTAATTTATGTTATCCATATACATAGTCAAATTACATATGACTATGTAATTTATGTTATCCATAACTCCGTATGTTATGGATAGTGAAGTTTACACACATTGGCATTTGTTTTGAGTAAATTATAGGTGGGA--ATAGCTATTTTATGCTGTGGACATTGTAGAGTCTAAG----ATAAGTACCTTTCCTGTGAGGTTAGTGAACGGAAGTTTTTGGCTTTATCATTTGAGGCATTTGCTCTGCTCCT----CCTACTCTGC--------------CTTTTGGGTGGGCTTA-----------------TCAGGTTGTC----CATTGGCAGGCAGGGCTCTAAGTGCAGTAACTTGATTTGC-TGTTGTAGTTGCTTAGGCACAGCAGCACTTCCG-AAAGAGTGATGGCACTGCTGAGGCGCACTGAGCATCCCACTGCAGGAAACACTGAGGTGTGCTCTAAGCAACAAAAACACCTCTCCCAGGCACCCACGCTCGATTTTGGAAGCCTCTTGTTAC------------ATATGTGTGATCAGGAATAGCTTTGAAGTAAATCCAAGATACGTGCATATTACAAGTATAATA-TCTGAGTACTT--AATATATATCAAGTTTGAAGCTTGGCTGTTGCTGATTGATGTTTAGCTCTAGACTTAAAGTTGCTTTCAAGTGATAACTGTCTTCATTTTAGACTTGGGAAGATACACATGCAAAATGGGAACAAGCAACAAAACTAATCCTTAGCTATCCAAAAGCCCAAATGGAAGATGGCCAGGTAAGTC----TGTAAAGTTGACTTTTGTCTATTAACTGATCTGCTAAATATATGTCCTTCTCTTTGGTAATCTTTCACGAGTCACTCAGTAAAGTAAG------CATATAGTTGTCTGAAAACTGATATTTAGTTGTGGTTTATCTAGACctgtactttgtaatatgatagccactagctacgtgtgactctt-taacttaaattttaacataattaaaattaaatacagt----ttagttcctcaatcatatagtagccacattgcaggtacccagtagccacatatgacaggtacttactctgttggacagcagaga-gaaaatgtttccatcatcacagaaatactgggcagcactgCTAGAGACTGTTTGTTGCAAAGACCATTTCTTTATCTTTTCTTGCTCTTTCTCCCTTCATCAGGGTGTTTCACAGAATTTTCAGAAAAGGAGCAACAG----AGGTAGAGAAAAATTAACAT-----GGAAACCAT s mm3.chr11 80225902 1808 + 122862689 GTTACAGACTATCTGCATTTCTGGAATC-----TAGGATAATATCTATTCCAATTGAAAT-------GCAGTACCATTATA-TGAACCATATATTGGTTCACAT---CTGATTTAGAGTAAGGCAC------ATCAGAAAAAG--ATCTTATTATTAGAAAGGTAAATTCTTATTT-ATTTTGTGTGCTATGGT--AAATGG---------------------------TACATTGTTGAG-TTTGTAAATAAAGTCACCTAAGTTGCAGATACAT------CCCTCCTTCCTCCCAGGATAGCACAGCAGGGTGCAGTGGAACCCCACCTATATGCCGACAAGCCCAGACCAAGCTAGAAGTGGCCTTATACATGTTTCTGTGGAATCCTGACACTGAAGCTGTTCTGGTTGCTATGTCCTGTTTCCGCCACCTCTGTGAAGAAGCAGATATTCGATGTGGGGTAGATGAAGTGTCAGTACACAACTTCTTGCCCAACTA-TAACACATTCATGGAATTTGCCTCAGTCAGCAATATGATGTCAACAGGTAAATGTGGCTCTTTTTTTTTTTTTTTTCTCTTACTCTTTTTAACCATGTTACTTTGACTGACATCTAATTATTTTTACAGTGGAGTCTATTTAA-AGAACAGTT-TGAAAGTTTTCAGGACAAATTCATACGGTTTACTTGAAATCCTTTTCTGAACAAGGT-AGATGTAATTCAGTGACATTTGAAA--------------TTTACTGAATTTTTAATATTC----AAACTTATTGGTAACTGGCACTGTAAGTTGATGTTAGTTATAGATTATAGAAATTAC-TCTGCTTGAAT-------------------TATAAATGGGAAGAT---------------------------------------------------------TTTAAACACCTAGGCATATATTTCCA-TAAA-CATAGGTGGGAAGATGGCTGTTTTATGTTGTAGACCTTTTGGAGTTGGGGATCAATGAATACTCTTGC--AGAGGTTGGTGAGAGCACGTGCTCACCTCGATCATCAGAATCATTTGTTTCATTCCTTCACTCTACTCTGT--------------GTGTGGGGCAGGCTCC-------------------------------CAGATGTGAAGATGGCTCTAA--ACACTAACTGGGTTTGCTTGCTGTCTTTGCTTAGGAAGAGCAGCGCTTCAGAAAAGAGTGATGGCCCTGCTAAGGCGCATTGAGCACCCTACTGCAGGAAACATTGAGGTATGGCCTCAGCAGCTGCAGCACCTCCCCC------------------------TCCCTATGTTAC--------TGTTAGCTATGTGATCAGAACAACTTGAGAAGCAAAGCTGAGTTATGTGCATATTACAAGTAGGGTATTCTCAGAACCTGCATTACATGTTGACTTTGAA----------------------------TTCACCCCTAAAGTTGCTCCCTAGTGATAATTGACTTCATTTTAGGCCTGGGAAGATACACATGCAAAGTGGGAACAGGCTACAAAACTAATCCTTAACTACCCAAAAGCCAAAATGGAAGATGGCCAGGTGAGTTGTTTTTTTCAGTGAATTTTTGTGTATTAATAGATCTGTTG----------CTTCACTTAAGTAATCCTTGATGAGCTAC---GAAGAGTAGGATATTATATGGAGTTGTTTTAAGAA-------TACCTGTGGTCTGTCT--GTCTGT-TTGCCTACTCTTGTAGATATTAGCCACATGTATCTGTTAGAATGTCACTTTTAACTCATTT--AATTAAACAAGTTAGACTTACTTTTTCAATTTTATAGTAGCCA------AGGT--TCAGTATT-------------TATTTACTCAGTTGGATAGTAGAGATGTAAAAGGTTACATGACTACAGGAATATTAAATATCTCTGCTAGAAACCACTTAGTTGAGAGACCAGTTACTCATTG----ATGTTCTTTGTCCTTT-GTTGAAGTA-TTCAAAGAACGTTTAGAAAAGATCTAATAGCTGTAGATAGAGAAAGA-GAATATTTCTAAGAATTCTC s rn2.chr10 61857943 1843 + 106208427 GTTGCAGACTATCTGTATTTCTGGAATC-----TTGGATAATACCTAATCCAGTTGAA-T-------GCGGTATCATAATA-TGAACCATATATTGGTTCACATTACCTGATTTAGAGTAAAGTAC------ATCAGAAAAAG--ATCTTATTATTAAAAAGGCAATTTTTTTTTTTATTTTGTGTGCTGTGGTGGATATAG---------------------------TACATTGTTGAG-TTTGTAAATAAAGTCACCTCAGTTGCAGATACAT------CCCTCCTTCCTCCCAGGATAGCACAGCAGGGTGCAGTGGAACCCCACCTATATGCCGACAAGCCCAGACCAAGCTAGAAGTGGCCTTGTACATGTTTCTGTGGAGTCCTGACACGGAAGTTGTTCTGGTTGCTATGTCCTGTTTCCGCCACCTCTGTGAAGAAGCAGACATCCGATGTGGTGTGGATGAAGTGTCAGTACACAACTTCTTGCCCAACTA-CAACACATTCATGGAATTTGCCTCAGTCAGCAATATGTTGTCAACAGGTAA-TGTGGCTTTTTTTTTTTTCCCTTTCTCTT--------TAACCATGTTACTTTGACTGACATCTAATTACTTTTACAGTGGAGTATGTTTAA-ATAACAGTT-TGAAAGTTTTCAGGGCTAACTCAAACCATTTCCTTGAAATCCTTTTCTGAATAAGGT-AGATGAAATTTAGTGACATTTGAAACGTAAT-------TTTCACTGAAATTTCAAAATGC----AAACTTATTGATAACTGGCACTATAAGTTGCTGTTAGTTATAGATTATAGAAATTAC-TCTGCTTGAAT-------------------TGTAAATGGGGAGAT---------------------------------------------------------TTTAAACACCTAGGTATATATTTCCA-TACA-CATAGGTGGGAAGATGGCTGTTTTATGTTCAAGACCTTTTGGAGTTGGGGATCAATAAATACTCTTG------------TGAGAGCACATGTTCACCTCAATTGTCAGATTCATTTGTT-CATTCCTTCATTCTGCTCTGTACATACAGAGGAGAGTGTTGGATAACTTACATGGAGGGGTTGGATAACTTAGTTATCCAGTTAGCTGTGAAGATGGCTCTAA--GCACT----------GCTTGTTGTCTTTGTGTAGGAAGAGCGGCACTTCAGAAAAGAGTGATGGCCCTGCTAAGGCGCATTGAGCACCCTACTGCAGGAAACACTGAGGTATGGCCTCAGCCGCTGCAGCACCTTCCCC------------------------TCCCCATGTTACAAGCCTCCTGTTAGCTGCGTAATCAGAACAACTTCAGAAGCCAATCTGAGCTATGTGCATATTACAAGTAGGGTATTCTCAGAACCTGCATTACATGTTGACTTTGAA----------------------------TTCACCCCTAAAGTTGCTCCCTAGTGATAATTGACTTCATTTTAGGCCTGGGAAGATACACATGCAAAGTGGGAACAGGCTACAAAACTAATCCTTAACTACCCAAAGGCCAAAATGGAAGATGGCCAGGTGAGTT----TGTTCAGTGAATTTTTGTGTATTAATAGATCTGTTG----------TTTCACTTAAGTAATCCTTTACGAGCTAT---GAAGAGTAGGATACTATATAGAGTTGTTTTAAGAC-------TACTTGTGGTCCATCTAGGTCTGTACTGCCTCATCTTGTAGATATTAGCCACATGTATCTGTTAGAATGTAGCTTTTAACTCGTCT--AATTAAACAAGGTAGACTTATTTTCTCAGTTTTACAGTAGCCA------AGGT--TCAGTATT-------------TATTTTCTGTGTTGGATAGTAGAGATGTGAAAAGTTACATCACTGTAGAAATATTAAGCAGCTCTTGTAGAAACCACTTAGCTGGGAGACCATTTTCTCTTCG----TTGTTCCTTGTCCCTTCATTGAAGTA-TTCAAAGAACATTTAGAAAAGATCTAATAGCTGTAGATAGAGAAAAA-TAATATTTCTAACAATTCTC a score=82241.000000 s hg15.chr22 14725659 806 + 49476972 TCATTTTGCTATTTTGTTAGGTATTCTAATTAAAGAATGTCTTGGGCAGAAGATGGAACCCAT----AGataaaataaaattttaaaatatGGACAGTTCCTTCAACTATTACTATTGACTATA--------------------------TTATCCATTACTTTGGAAATTGATGAGTTGGT-GTTTGTGTGTATATGATTTATAATGCTCATATTGCTCTCATTATTAGGTGGTTTATAAAAACTGGCTCTTCCCCCAT-GTTATTTTT-CTGTCATGCTTAATTATAATAAGAAAAAAGTTATATTTTCGTGAAGCAAAATTGTGTACC-TCAT----ACCTTTATTTGGAGGGGACATGTAGCTTTAGAATGAAAGCTTTTGGGGGATAACTGTTACTAT-AATatataatt-acataccatacaattc-acgcattcaaagtgtccaattcagtgactgttgttagcatattcacagagttgtgcaaccatca------ccaccatcagtttcagaacaatttcatcaattgagaaaa--------------aaagccggtatcctttagctatctctgcctctaacaaccccccacctttcttgtctctcttccccccgcttctccaaccctaggcaaccacgaatctactt--tgtctctgtagatttgcctattctggatattttctgtaaatggagttttagaatatgtggccttttacgattagcttctttcacttagcataatgttcccaaggttcatccgtgtGAAATCAAAGCTTTTT--AAAAGAAATTTGATACTTT--GGCAATTATATTAGT----GTATGACAAAAA--TAAATC-AGTGGCTCTTTAAAAATGTATATGGTA s mm3.chr11 80227861 839 + 122862689 TCATTATGCTGTATTCTTAGATACTCTAATTAAAGGGGCTGCTGAGCACATAATCGAGCGCACTTTAAGGTTGAGTGCAATTTTAAACTTTGGACATTTTATTTAACTATTATCATCAAGTGAATCATTTTATTCAGCAACTACCACCAATTCTCTATTACCCTAGAAATTAAGAATTAACTGGTTTGTGTATAACTAATTTGTATTACT-ATACTGCTTTCATTATCAGGTCTTTGAGACAAACTGTTTATCCTCCAATTGCTGTTTTTCTTGTTATGGTCACTTAGAGCAAGTAAAAGT---TGTTTTGAGGAAATAATACAGCCTTAG-TCATGAAAGTTTTTCTTTTGAGGG-----------------TGGGAG--TGTGGGTGTTGACTGTTTAAATCAGCatagaattcatatactgtagagtta-tctttcataaggtggtcaacctaatgattgtttttagtatagtcacagaattctataactgtcagtttatacacaatcaattttagtacattttcatgctctcacagaatgccccctcccaccaaacctgctccccattagctatttctagctct---aacttgctgtatttcctacctctctg-tctctaccgctccagccttgagtagctgctaatctatgttctatttctacaaaattaccttctctgagtattttgtccaa-tggaatcataggtgatatgggcctttgtgactagcttttttt-ctccttaaattgtt--taaggttcatcACTAC-ACATCAGAGATTTTT-AAAAAGGAATTTGACACTTCAGGGTGATTTTATT---CTAGCTATGACAAAAA--TGTATTAAGTGGCTCTCTAAT-GTGTGTATGGTA s rn2.chr10 61859937 827 + 106208427 TCGCTATGCTGTGTTGTTAGATACTTTAATTAAAGGATCTGGTAACCAGACCATTGAACCCATTTTAAGGTTAAGTGCA--TTTAAACTTTGGGCATTTTATTTAACTATTATCATCAAGTGAATCATTTTATTAATCAACTACTACCA-TTATCTATTACCCCAGAAATTAATAATTAATTGGTTTGTGTATAATTATTTTGAATCACCCATACTGCTCTCACTATCAGGTCTTCGAGACAATCTGT----CCTCTCCTGGCTGTTTGT-TTGTTATGGTCACTTAGAGCAAGTAAA------TGTTTTAAGGAAATAATACAGCCTTAGATCATGAAAGTTTTTCTTGCAAGGG-----------------TGGGAG--TATGGGTGTTGACTGTTTCAGTCAGCatagaattcatatactatagagttaatctttcataaggtggccaacctagtgactgtatttagtat-gtcacagaattctttaactggcaatttatacacaatcaattttagtacattttcattttctcatgtaatgaccc-tctcaccaatcctgttcccaaatagctatctctagctct---aacttgctgtctttcct-cttctctg--ctctacccctgcagccttgagtagctgcaaatctatat-ctatttctacaaaattaccttctgtgaccattttgtccaaatggaatcatagattaaatgggcctttgtgaatagctgctttt-ctctttcagttgtt--taaggttcatcaatAC-ACATCAGAGGTTTTTTAAAAAGAAATTTGACATTTCAGGTTGATTTTATTAGTCTAGCTATGCCAAAAAAATGTATTAAGTGACTCTCTAAT-------AAGGTG a score=319443.000000 s hg15.chr22 14726465 2488 + 49476972 ATTTAGGGGGTTGATTTTAATGTATTTTTTTACAT-----TTTTTTGTACGTTTGTCAC-GGAAGAAATGTTGGATAAAGAGTAATTTGTCAAGTCTC-AACTAATTTAGGTTTAATTCATGCTTTGCACAAAAA-TTTTGTGTTTAGGCTGTTGAAAG-CTTCACAAGACCATTGTTAAGAGGCGAATGTCCCATGTGAGTGGAGGAGGACCCATAGATTTGTCTGACACAGACTCCCTACAGGCATGGATCAACATGACTAGCTTCCTTTGTGCCCTTGGGGGAGTGTGCCTCCAGCAGAGAAGGAATTCTGGCCTGGCAACCTATAGCCCACCCATGGGTCCGGTCAGTGAACATAAGGGTTCCATGATTTCAGTGATGTCCTCAGAGGGAAACGCAGATACACCTGTCAGCAAATATATGGATCAGCTGTTGTCGTTAATGGTGTGTAAGCTTGAGAAAGTGGGACTTCAAATACGGACCAATGGTAAGGACCTGGTGGGTCTAGAATTGAGTCCTGCTCTTTATCTGATGCTATTTAACAAATTGAAGAGACGCATCAGCAAGTTTTTTGACTCCTAAGGACAGGTAAAGTGTGCTCTTTTTTATTTTTCACCTTTCCCTATGAATAGAGTGACTTGTTTGAAAT-AATGAAGCCTTTTTCTTTCAGATTATTTAAATT--------------------------------AG---------GTACTCACAGTTTTTAAAAATTGTCAAAAAATTGTAGAAAGAAGAATCATCTCAATGAATGGTCAGCTTGCTTCT-AGGAACTCTGAtgtgtatgtgtgcctgagggtatacgtgccttgtatatgggtatgagtgtctgtgtatatctgtgtgcctgtttggctgcgtgcctgtgggtgcatgtctctatttgtgtgtTTAGATCAGTCAGTTTCATCTCTCTAGGGATCTGTCTTCTGGGCATTGATGGCAAATCATTAATA----------TATTTGTTC----------------------------TCTCTATAGGTTTTATTGACTGATACCAATACTCAATTTGTAGAGGAAACCCTAGCTATATTGAAGAACTTGCTAGATAATCATACTGAAGGCAGCTCTGAACATCTAGAGCAAGCTAGCATTGAAACAATGATGTTAAATCTGGTCAGGTAAGCCTTCTA---CTGAAATGTAGCAGAAACATA-CTTTAAGATTTAAGAGACAAGAAAAACCTGTCACACATTGATATTGATAGTAATTGATAAAAT-AATTTGCCATT-CTTTACTGCA---CACAAACTAGGCTGTGACAACAAGGTAACCAGAAATTGTGTATGCTCTCCTATAAATAAATGTC--TTACTGTT----TTCAAACTTACGTTTAGTTCATTTTATTTGATGGTTAAAGTATTTTGAATGCCTTATCTTGTGTCTGTATCTGATAACTTTTTTATTGTCTCTATGTCTGTATAGGTACGTTTGTGTGCTTGGGAATATGGTCCATGCAATTCAAATAAAAACGAAACTGTGTCAGTTGGTTGAAGTAACGATGGCAAGGAGAGATGACCTCTCATTTTGCCGAGAGATGAAATTTAGGTGAGTTCTCAAAAGAGCAATGTAGGGTCTTGTAAATCTTAATTTGTTGAATGAAGTACAGAAATAGAGTAGATATCTGGTTATTGGTAGGAAGAAAGACATAAAAAGAGAGCAGTTTACATGTTTGTTTTTCTCTGTGTC-TCTC-CTCAAATTTCCCTAAGCTTTGTGCC-----------------------TGTGGCAAGCCTCCCTTTTTCTAAAA---CTCTGCTGTACTTGAGCTAAGAATTT--------------GATTCTGTTTCCAATCTGATAGCATAACTAAAGGCCATGATGGAGGATCAGTATCCACGTTGCT------TGT-TCCTTCTGGCTTTT------ACATCTATGATAGCAGTATCTCTTTTATAAAGTCGTCATGT-CACCTGGGTTATCTGC----------CAAATTATTTGCACCATAAGTAATCTTACAT-CACTGAAGGT-----------------------GTGTGTGTGGGGGGGTATGACT--------------------------TC----AG--------------AAAAATTGTGTGCTGTTTCTCTTTTCTCCACCATTCTATAGGAATAAGATGGTAGAATACCTGACAGACTGGGTTATGGGAACATCAAACCAAGCAGCAGATGATGATGTAAAATGTCTTACAAGGTAAAA-----------AAAATGA-----------------------------------------------------------CTTTCAAATATTAGTGGGTTTTACTGTGAGAATTATAACTACTTCATTACAGCTTTATACTTGTATTTTATGTGTATTTAA--ACTTTTTAGATGTAAAACTTTTGTGTTCAAAATATGTAAAGACACTAATCTTTATTACTACTTTTTCTTGACCGATAGACTTTCAGGAAAAATAAATGTGCGAGAGCGGTATGTTTGGGAAGTTATTGTTGTCAGTTTATGAAGAATAGTCTACAGTTATTGGGAAATAAGATACATAAAGCCTCAGATTGCATTTATGTTATGATGAGATAGATAAAGGTATTATTTGAGAAAC-TCATTGTGTTGAGTC----TAAGAAACAATTGATTTCCTGATTCAA------ACACCAGAGATAGACCAAAAAAGGAAGTAATTAAGTCTACTTTAATGATAA s mm3.chr11 80228919 2620 + 122862689 ATGTATGTGGT--AGTTTCAAGttttttttattattattataaaatGTACCTTTCCTACTGGTAGAAA---TGGAT-AAGAGTAATTTGTAAGATTTTTATTCAGTCTATGTTGAATTCATGCTTTTCACAAAAA-TGTTGTGTTTAGGCTGCAGAAAGTCTTCATAAGACCATTGTTAAGAGACGGATGTCCCATGTCAGTGGAGGAGGCTCCATAGACTTGTCTGACACAGACTCCCTGCAGGAGTGGATCAACATGACTGGCTTCCTTTGTGCCCTTGGTGGGGTGTGCCTGCAACAGAGAAGCAGCTCTGGCCTAGCGACATACAGCCCACCTATGGGCGCTGTCAGTGAACGCAAAGGGTCTATGATTTCTGTAATGTCTTCTGAAGGGAATATTGATTCACCTGTCAGCAGATTTATGGACCGGCTTCTGTCCTTAATGGTGTGTAACCACGAGAAAGTGGGGCTTCAGATACGGACCAATGTTAAGGACCTGGTGGGTCTGGAGTTGAGTCCTGCTCTGTATCCAATGCTGTTTAACAAACTGAAGAATACCATCAGCAAGTTTTTTGACTCTCAAGGACAGGTGACGTCTTCTCCACTTTGTTTTTTACCTTTCTTTATGAATATAATAATA-GTTTGAAATAAATCAAGACTGTTTCTTTCAAATTATTTAAATT------------ATAGACC-------------AACATGATAATTCACTTACAA-CTTTAAAACCTTTC--ATAATTACAGAAAAAAA-ATCATGTAACCTAGGGATCAACTTGCTTCTAAAGAACTCAGGCCTGTGGGTATGCCTGGAGTTAG--GAGTCTTGGCTGTGTGC-CTCGTACCTCTGTGTATCTGTGTG----TTTGTTTACTTGCCTGTAG-----TGTGCCTGCGTGTG---ATGGTTACATCAGTTTCATTGCCCTGATAA--TGGTTTCTGTTCATTGATGTTAGATCGCTAATGGGCTGTTTTTTG---GTTT------------------TGTGTGTGTGTGTGTATAGGTATTACTAAGTGACAGCAATACTCAGTTTGTAGAGCAAACCATAGCCATAATGAAAAACCTACTGGATAATCATACTGAAGGCAGCTCTGAGCATCTGGGACAAGCGAGCATTGAGACAATGATGCTAAATCTGGTCAGGTAAGCATTCTG-TCCTGAATCACAGCAGAGTCTTG-TTTTAAGAGGTAAG-----------ACCTCGTATGCCCTGATAATGGGGA----TGATGAAGT-AGTTTGCCATTGTTTTACTACAGA-CCCAGTGTG-ACTATGGCAATAAGATAATCAGAAGTTGTATATGTTCCTACCTAAGTAAAATTTAAATATTATTCACGTCTAAAATTACATTTACTTAAGTTTACTTAAAGATTAA---ATTTAGAATACCTTATCTTTTGTCCATATCTGATCATTTTTT--TTAATTCCATGTTTAATTAGATACGTTCGTGTTCTTGGGAATATGGTCCATGCAATACAAATAAAAACAAAATTGTGTCAGTTAGTTGAAGTCATGATGGCAAGAAGAGATGACCTCTCGTTTTGTCAAGAGATGAAATTTAGGTGAGTTCTCAGAAGAGCAAAGCAGGGTCTTGTAAGTATTA---TGTTAAACAAAGTGTAGAAAAGTAGCAGAGCTT-TTTGTGTGGGGAGGGGAGGGAGGTACATA------TTTGTGCATATTTG-TTTTTTCTGATTATTCTTAACCAACTTTCTCAAAGCTCTGTGCCCACAAGCATTTGTTTTTCTGTTTTGTTTTCAGTCTTTCTTTTTTTAAAAATTCTCTCCTTTCCTGGAACTAATTAATTTATGGTCACTAAAAGTTTCTGTTTCCA---------CATTGCAAAGGGACAGTGCAAAGAACCAGCATCTGAATTGTATC----TGTGTCCTTCTGACTTTTATTCCATCACCCCTGATAGCGGTATCTGTTGTATAAAGTCACCCTAG-CCCCTCAGCTGTTTTCACTAGTAGAGCGCTGTTTTGGTTCTCAGCATATGCCTACAGTTCCTTCAGTCAGAAAGCCAAGGCAAAAGTTCAGGGCCAATCTGGGATATACAACTATATGATAAAACTTTTGTCTAAATAATC----AGTAAACTATGTGTTAAAAACTTACTTGTTCTTTTCCTTTTT----TCATTCTGCAGGAATAAGATGGTAGAATATCTAACAGACTGGGTTATGGGAACATCAAACCAAGCAGCAGATGATGACATAAAATGTCTTACGAGGTAAAATAAAACAGAACAAAATGGACAgagagagaggtggggaggggaaggaaaacggagaaggagagagggaaagagGCGGTTTTTAAAGTTCTATCATGTTTTACTTTACTCATGAAAAC-----CAGTACAG------AGATAGCTGCTAGGTGTGTTAAGTTGTTTTGTAGGTGGTAAGCTTTTGCATTTGAGATATTTAAAGTTCCT----TTTATT--------ATTTTACTGGAAGGACTTTTAGTTGAA--------GCATGTGAGGTAGTCTTAGGAA---AGTGGTATTAGCTTAGGAAGTATGGTTAACAGTTATTGAG--AGAAGATACATAAAGCATTAGGCTGTATTACTT-----------TAGATAAAAACATTGATTGAGGAACATAATTATG---AGTCTTTGTAAGGCATAATTGCGTACATGCTGTAATGACAGATGCTTGATATATATCAGAAATGG-------TAACTGTGATTGGATGATAA s rn2.chr10 61860975 2517 + 106208427 ATGTATATGGT--AATTTCAAGATTTCTTTAAAAT----ATCAAATGTACTTTTCCTACTGGAGGAAA---TTGAT-AAGAATAATTTGTAAGATTTT-ATTCAATCTATGTTGAATTCATGCTTTTCACAAAAAATGTTGTGCTTAGGCTGCAGAAAGTCTTCATAAGACCATTGTTAAGAGACGGATGTCCCATGTCAGTGGAGGAGGATCCATAGACTTGTCTGACACAGACTCCCTGCAGGAATGGATCAACATGACTGGCTTCCTCTGTGCCCTTGGTGGGGTGTGCCTGCAACAGAGAAGCAGCTCTGGCCTAGCAACATACAGCCCACCTATGGGCCCTGTCAGTGAACGCAAAGGGTCTATGATTTCTGTAATGTCTTCTGAAGGGAATGTTGATTCACCTGTCAGCAGATTTATGGACCGGCTTCTGTCCTTGATGGTGTGTAACCATGAGAAAGTGGGGCTTCAGATACGGACCAATGTTAAGGACCTGGTGGGTCTGGAGCTGAGTCCTGCTCTGTATCCAATGCTGTTCAACAAACTGAAGAGTGCCATCAGCAAGTTTTTTGACTCTCAAGGACAGGTGAAGCCTTCTCTACTGTG-TTTTTACCCTTCTTTATGAATATAGTAATA--TTTGAAATAAATCAAGACTGTTTCTTTCAAATTATGTAAATTATTTAAATTGAAATAGTCTTTCAAATTATTTAAACATGATAATTCACTTACAG-TTTTAAAAGTATCC--ATAATTATAGAAAAAAA---CAGGTAGTCTAGGGATCAGCCTGTTTCTAAAGAACTCAGGCCTGTGGCTATGCCTGGAGTTAT--GAATCTTGGATATGTGCATTTATACCTGTATGTATCTCCGTGT---TTTGTTTGTTTGCCTCTGG-----TGTGCCTGCATGTG---ATAGTTACGTCCGTTTCATTGTCTTGGTGA--TGTTTCCTGTGCATTGATGTAATATCGCTAATGGGCTTTTTTTTATTTGTTTTTGTTGTTGTTTtgtgtgtgtgtgtgtgtgtgtgtAGGTATTATTAACTGACAGCAATACTCAGTTTGTAGAGCAAACCATAGCTATAATGAAGAACCTACTGGATAATCATACTGAAGGCAGCTCTGAGCATCTGGGACAAGCTAGCATTGAGACAATGATGCTAAATCTGGTCAGGTAAGCACTGTGCTCCTGAGTCATGGCAGAGCCTTACTTTTAAGAGGTAAG-----------ACCTCTTATGCACTGATAATGGGTG----TAGTGAAATAAATTTGTCATT-TTTTACTACAGACCCCAGTGTGAACTGTGGCAATAAGATAACCAAAAAGT-TGTATGTTCCTACCTAAACAGAAGGTAAATATTATTCATGTCTAAAGTTACA---------------------------------------------------------------AATTTTT------ATTCTGTGTTTAATTAGATATGTTCGTGTTCTTGGGAATATGGTTCATGCAATTCAAATAAAAACGAAATTGTGTCAGTTAGTTGAAGTCATGATGGCAAGAAGAGACGACCTCTCGTTTTGTCAAGAGATGAAATTTCGGTGAGTTGTCAGAAGAGCAAAGCAGGGTCTTGTAAATATTA---CGTTAAGTGAAGGATAGGAAAGTAGCAGGGCTCAGCTGTGTGGGCAGGGGAGGGAGGTACAAA----GTGTTGTGCATATTTGTTTTTTTCTGAATA-TCTTAACCAAGTTTCTCAAAGCTCTGTGCCCATGGGCATCTGTTTTTTTGTTTTGTTTTCTGTCTTTC-TTTTTAAAAAATTCTCCCCTTTCCTGAAACTAATTAATTCATGGACACTAAAAGTTTCTGTTTCCA---------CATTGCAAGGGGCCAGTGCAAAGAACTAGCATCCAAATTGTATCTCTTTGTGCCCTT---------------TCACCCC-GATAGTGG--TCTGTTCCGTAAAGTCTCACTAGATCCATTGACTGTTTGC----------------------------------CCTACAG-TCCAGCAGTCAGACAGCTAA-------------GGCCAACCTGGGCTGTACAACTATACAATAAAACTTTTGTCTAAATGATCAAATAGTAAGCTGTGTGTTGCAGACCTGTTTGCTCCTTTCCTTCTT---GTCATTCTGCAGGAATAAGATGGTGGAGTACCTAACAGACTGGGTTATGGGCACTTCAAACCAAGCCGCAGATGATGATGTAAAGTGTCTCACAAGGTAAAATAAAACA----AAAGTGG--AGAGGGAGAGGTGGCGGGGGAGAAGAGGAT--------------------------CTTTTTAAGTTCTATCATGTTTTACTTTACTCATGAAAAC-----CAGTACAG------AGATAGCTTTTAGGTGTACTAAGTTGTTTTGTAGCCTATAAGCTTTTGCATTTGAAATATTTAAAGCtttt----tttttt--tttttaaatttaatGGAAGGACTTTTAGTTGAA--------ACATGAGAGGGAGGCTTGGGGA---AGTAGTATCAGCTTAGGAAGTATGGTTATTGGTTATTGAGAAAGAAGATACATAAAGCATTAGATTGTATTACTT-----------TAGATAAAAATATTTATTGAGGTACGAAATTATGGTAAGTCTTTTTAAGGCATAATTGCTTAGGTGCTTTAATGAC--ATGATTAATACATTTCTGAAA----------TAAC--TGATTGGATGATAA a score=70341.000000 s hg15.chr22 14729457 763 + 49476972 CTTTTTCATCCATTCAAAATCCATAAGCTAGAAAGGAAAAGATTGATAAAATGAATTCATTCAA--------AAATCATAAA--CTTCTGTCTGGGACAA-AAATGTCATGAGTAAAAA----CAATCCTATGGTTAATATCCTCGTCCAATAGTTCTCTTAGAATAGTCCTAAAAGTGCTTTTGTGGCTCAAAGAGCAATACCTTGAAATTTTTGGTGCATGTTGTCAGATTACCCTTTAGAATGCCTGTTGCttttaaaatattttttattttagtat-------tttattGTTTATCCAATTATAGACTATTTTACATACTCAGTAGACAACATAAAGCCTCA-GAGGTAC-TCTGTTCTTTTTCTTTTAGGCATCAGGTACCTGAAAAAGAAGAGATCAAGGCTTTGAAAACGTTAAGTATTTTCTACCAAGCTGGGGCTTCCAAAGCTGGGAATCCTATTTTTTATTATGCTGCACGG-GGTAAGAAATACTATGTTTGGTGTCTCCTCTCAACAGAATTTTTTAAACGATAGCAATTATAGA-----GATGGCAAGTTTGGTTTTTCATATTTGACTTAACAAGAATTGAAGACAAGTTTACCTGGGAGCATACAGTGGGTTAAATAGCCTGCCTTTCCTAAAATGGTGGTCAGTATCTAGTAACTGCTTTTCAGACTACCCATTTCATATTGGTTTCCCTGTCCTACATCATTTTTTAAAATACTGCCTACAATGGATTAATTACCAAGAGTTAAAAAACCACAAAGCATCTTTTGTTTTCAAGTA s mm3.chr11 80260733 681 + 122862689 CTTTCTCACCTTTCTAAAAACCATAAATGAGAG-------GATTGATGAACTGAACT--TGCAAGGAAAAGCAAACTAAAAATCCTTTTATCTGAAAAAAGAAGTAGCATGGGTAAAAGGC-------GAGCAACCACCATGCATGTCCAGGGGTGGTGTTA-AGTAATCCCAAGAGAGTCATCCTGACTCAGGAA--CACACCTTGACATTT-------------------TGCCCTTCAGAAAACTGGTTGCTTTTTAGGTATTTTGCTTTTTGGTGTTTTTCTTTTTATTGTTGAT-TAATCACATTTTTCTTTAACTAGGCAACAATTTGTATAAAGACTCTTAAGTGAC-TC---CCTCTTTGTTTTAGGCACCAGGTACATGAGAAAGAAGAGTTCAAGGCCTTGAAAACGTTAAGCATCTTCTACCAAGCTGGCACCTCCAAAGCTGGGAATCCTATTTTTTATTATGTTGCACGGAGGTAAG-AATAC---ATTT--TAGTCTCTTTTAATAGGGTTTTTCAAGTGATAGCAATTGCAGAAACGTGATGCGATTTTTTTTTTTTCCTTCTTGAATTAATAGCCCTTAAAGCCATGCCTCCCTAGA------------------TAGTATGCTTAC----------TACTAGGTATTTG---------TTTGAGAGTATGCACTTCATAT----GTCTTTG--CTACATCAGATGTTAAGGCACCACC-ACAAGGAGTTACTATC--AGAGTGAAAAGTC-----------------TTTCGGGTA s rn2.chr10 61894260 658 + 106208427 CTTTTTCATCTC-CTAAAATCCATAAACAAGAG-----AAGATTGAGGTGTTGAACT--TGCAAGGAAAAACAAACTAAAAAACTTTTTATCTGAAAAAAAAAATAGCATTGGTAAAAGGTAGTAACTGTGCAGCTCCTCTCCCTGTCCAGTGGCATTGTTA-AGTAATCCCAAGAGAGTCGTCCTGACTCAGGAA--TGCACCCTGACATTT--------------------GCCCTCCAGAAAACTGGTTGCTTTCTCGGTATTTTG------------------TTTATGGTTGAT-TAATCATATTTTTCTTCAGCTATTCAACAGTCTGTGTAGAGCCTCT-AAGTGACATT---GCTCTTTGTTTTAGGCATCAGGTTCATGAGAAGGAAGAGTTCAAGGCCTTGAAAACATTAAGCATCTTCTACCAAGCTGGCACATCCAAAGCTGGGAATCCTATTTTCTATTATGTTGCACGGAGGTAAGAAATAC---GTTT--TAGTTTCTGTTAATAGGGTTCTTCAAATGATAGCAGTTGAAGAAAGGTGATAGGA--ATTTTTTTTTCCTTTTTAAATTAATAGCCCTTAAATCCATGCCTTCCTAGA-------------------------------------------TAGGTATTTG---------TTTGAGAGTACTCACTTCTTATTGTCGTCTTTG--CTACATCCGATGTTAAGATAGCACC-ACAAGGAGTTACTGTC--ATAGTCAAAAGTC-----------------TTTTGGGTA a score=32091.000000 s hg15.chr22 14730220 805 + 49476972 TATTCTGATTAAATAGTA----CAACATGATAAGCGGGAACTTTTTTTAA-------------------------------------AAGAAGAAATAAA---------ACTGTAAGAGCCTGTTTCTGAGAACTTTTAAAAATATGCTGTGTAAGACAGCATCAGGGTGATTTAGCAAATAATTCAAAGGGGTGGTGGGAAAT---CATGAAGATGGTGCAAGGGGTGGCCTGGAAAATGGTGCTTGTTCGTGCTGCCCTCAGTCGAGGCTGGTTCCTAGAAAGCCTTTCTGGAAATGTTGTGAGCTCTTCCTTAATAATAGATATGATGCTTGCATTGCCTTCCCTATCATTGT-------------------CTTTTTTT----------------CTTGCCTCATTTTACCTTCCTTTTGAAAACTCTTCTGTGACATTATTTGGT------CCCATTTA-CCATAACA----TAC-ATTCATGGTAATTGAGCCTTagagacaacatgatacg-tatagagaccactgattttggaatctcaaggatcatgtttagacttagttctgccaatcattagctata-gacttAATCTTTACCAGTTTCCTGGATTTAACAGTGTTTAACATCCATGACCGTTAAGTTAGTAGACGTACATTGTTAG-----TCAATTTGCTGGCCACAGGTGGCAGTGTGTAGGAAACAAATTGAGGTTGAGAAATAGTGGAGAGGCGGTGAAGAATCA---GTGGAAGATGGGAAACTTGTCTAATTAGGTCATTCATATAGCCTTAAGACCAAGAAGTCCAAAGGACTGGAGCATTAGGGAATCAAGAAAGTA-AGAAAATTGTGTCGAACCTCCCCGCCCCGCCCTTTAACAATTCTAAGTAACCCCTTCTCACCTTCCCA s mm3.chr11 80261414 744 + 122862689 TATTCTGATTTTATAATATCTGCAACACAAAAATCAGAACCCTCCCTacacacacacacacacacacacacacacacacacacaTTTAAGAAGAAAGAAAAGCTAGTATATTGTATGAGACTGTATCAGAGCAATTTT-----------------------ATCAGAGCGATTTAAGAAAGAATTA-CTGGAGCTATAGGAAATGGCTATAAAGATGG---ATAGGGTGGCCTGGGAAATA------GACTGTGATGTCCTCAGCC------------------------------ATGCCATGAGCTGTtcttc-----------ttcctctt-cctcttcttccttctcctcttcttcctcctcctcctcctcctcctccATCTCCATGGTGATGGGCTTGCCTTGCTTTCCCTGCCATGTGAAAACTAACATGTGGTGGTACTTGGTTAGGCTCTCTTCTTCCCATGAGAATGGCACAACCCACAGTGGCTGAA-CTTGGACAAAAAGTGATACTACATAGTGGCCCATGATAACGAGATGTTAAGGG-------------CAGTCCAGC--------AGCTCTAGGACTTAGTC---------TTCTCAAACTTAACAG------AAATAAAGGA--ATTATGTTTATTGA---CTATGGTCAT-----GCAA----------AAACGTGGCA------------------GAGGTTGAGAAATCATACAAAGCAGGAGAAGGAAGAAGAATGAGAAACGTGAAACTTTTTAAATTAGAT------------------ACTCAGCTGTCCAGAGTTCTGAGTAACTGGGGAATAGAAAAGGAACAGGAAAACACGCTTACCTTT----GTCCTTTTTTTAACAACTTTAAGGAATATCTTCTAATTCTAGGc s rn2.chr10 61895046 625 + 106208427 TATTCTGATTTTATAATATTTGCAACACAAACATCAGGACCCCCCCCCCACACACACACACACACAC------------------TTAAGAAGAAAGGAAATTTAGTGAATTGTAT----------CAGAGCACTTTT-----------------------ATCAGAGCAATTTAAGAAGGGATTC-CTGGAACTATAGGAAATGGCTGTACAGATGG---ATGGGGTGGCCTGGGAAACA------GACTGTGATGTCCTCAGCC------------------------------ATTCTGTGAG---------------------------------------------------------------------CTTCTCCTTCTCCACGGAGATGGGCTCGCCTTGCTTTTCCTGCCGCGTGAAGACTAACACGTG--GGT-CTTGGTCATG--CTCTTCTT-CCATGAGAATGGCAC-TCCCACAGCG----------------ATAGT-------CACAGCGGCCAGTGCTGTGGAGGTGTC-AGGG-------------CAGTCCAGC--------AGCTCTGGGACTTACTC---------TTCCCAAACCTAACAG------AAATGGAGGA--ATTAGAGTTATTGAC--CTATAGTCGGGAATAGCAA----------AAACCTGGGA------------------GTAGTTGAGAAATCATACAAAATGGGAGAAGGAAGAAGGATGGAAAATGTGAAATTTGTTTAATTAAAT------------------ATTCAGCTATCCAGAGAGC------ACTGGGGAATAGAAAAGGAACAGAAAAATACATTTGCCTGT--------CGTTTTTAACAACTTTAAGGAATACCTTCTAGTTCTAAGc a score=3198.000000 s hg15.chr22 14731025 52 + 49476972 TGAAAGG--------CC----------TCTCTC-------CAGCTCTTATCTCAGTTGCTATTTCTAAATTGCCTAA s mm3.chr11 80262266 66 + 122862689 TGGGAGGAAAAAA--CGACCCTCCTTATCTCTCCACAAAACTGTTCTTGTCTTGGTTGTTCTTT---------CTAA s rn2.chr10 61895793 58 + 106208427 TGGGAGGAAAAAAATCCACCCGCCTTATCTCTC----------TTCTTGTCTTGATTGCTCTTT---------GTAA a score=1480.000000 s hg15.chr22 14731077 21 + 49476972 GATAATTTTAATTTTCTTTTT s mm3.chr11 80262332 21 + 122862689 GATAATTTTAGTTTTCTGTCt a score=17544.000000 s hg15.chr22 14733953 147 + 49476972 TTTTCTTTTGTACTTGAGATGAACCATATTTGCATTCTAACCCCAACCTTTAATACAACCAGGATGTTTTTACTTT-CCCTTTTTTGTGTAAGTAGAAAGCAAACATTGGTGAGGAAGGTAGAAGATGTGTG------TCCCCTCCTCTTTAAt s mm3.chr11 80262506 142 + 122862689 TTTTCTATTGCATTTCAG-----CCTTGTTGGTATTTCAGCTTTAACCTTTAGTACTATCAGGGTATTTTGACTTTTCCCTGCTATATCTAAGTTGTGAG----GACTGGTAAGGAGTGTGTTAGATGTGTGCCTCACTCCCAGCCCCCTT--- s rn2.chr10 61895862 141 + 106208427 TTTTCCTTTGCATTTAAG-----CCATGTTGGTGTTTTAACTTTAACCTTTAGTAATAACAGGGCATTTTGGCTTT-CCTTGCTGTATCTAAGTTGTAAG----GACTGGTGAGGAGGCTGGTAGATGTGTGCCTAACTCCCAGCCCCCTC--- a score=15577.000000 s hg15.chr22 14734398 249 + 49476972 TAAAATCTGACTAGTTTACAAATAGCAAAGATTTC---------TGGAAAACAAAGTTGGGTTGGTTTTT----TTTTCAGGATCAGAAACTGTTATATTTGTATTCCTTCTCTGTGGTGATCTAGAAAAAGCTAAAGGAAAGCAGATTGGACCTGCTGT------GGATACTTCAGTGAGATTCAATCAGTTCGGTTTCCGTGAAACCTGTTGAGTCTTGTGGCTTGAGAGTGCTAAGGATTCTCAGCTCTGCTGCTTATTAGCTGC s mm3.chr11 80262648 216 + 122862689 TGAATTCTTTGTAGTTTAAAGGTAGCAGAATGTTG------------------------GATTTTATCTTCCCCTCTTTATGATAAGGAACTG-TAAGTTTGTGGCCTTTTTCTCTGGTGGCCT------AGCAGAGGAAAAGCAGATTGGCCTGGCCTTTCGACG--------------GGTTTCCACAGCTC----TAAATCAGGCCTGC--ACACCTTAGGTTTGCAGTTGCCAGGGATCCCCAG-TCTGCGGCTTATTAGGTGT s rn2.chr10 61896003 224 + 106208427 TGAATTCCTTGTAGTTTAAAGGTAGTAAAATGTTGTTGTACATGTGGAAA------TTGGATTTTATTTTCCCCTCTTCATGATAAGGAACTG-TAAGTTTGTGTTCTTTATCTGTGGTGGCCT------AGCAAAGGAAAAACAGATTGGCCTGGCTTTTCAGAGGGTTTCATCAGTGAGGTTTCCACAGCTC----CAAATTATACCCGC--ACTGCATAGGTT-------------------------TGCTGCTTGTTAGGTGT a score=1650.000000 s hg15.chr22 14734989 107 + 49476972 TCTGTTGCTTCATATGTTA-AAG-------CTGGGGTGTGTGCTTATGAAAACTGTCCACCTCTCCTATAAAGTGTTTTGTGACCTATAAAGTTGTGTAAGGAGTAAATTTGAGA s mm3.chr11 80262864 83 + 122862689 TCTGACTCTTCATTTTTGAGAAG-------GAAGAAAATATGCTTGCTAAACTTCTGTGTCTCT-----------TTCGGTG-----TAATTTTGT------AACAAACTGA--- s rn2.chr10 61896227 92 + 106208427 TCTAGCCCTTCAGTTTTGAGAAGGAAGAACGAAGAACATAAGCTTGTTAAACTGCTGTGTCTCT-----------TCTTGTG-----CGATTTTTTAC----AACAAATTCA--- a score=5931.000000 s hg15.chr22 14735096 33 + 49476972 TTTTCTTTTTTTCTTTCTTTCTCTTTCTGGGGG s mm3.chr2 39274826 33 + 181423755 TTTTCTTTCTTTCTTTTTTTTCCCCCCTGGGGG s rn2.chr3 17655824 29 + 165924081 ----TTTTCTTTCTTTTTTTCTCCCCCTGGTGG a score=5686.000000 s hg15.chr22 14735129 41 + 49476972 ATATGGCACTGTCAGTTTCAGATTTTCAGTCC-------TTTTA-GCTT s mm3.chr11 80262969 47 + 122862689 ATATGATATTGCCAA-ATCAAATTTTCAGTACTTAGGAGTTTTA-GTTT s rn2.chr10 61896347 48 + 106208427 ATATGATATTGCCGA-ATCAAATTTTCAGTATTTAAGAGTTTTAGGttt a score=13180.000000 s hg15.chr22 14735170 178 + 49476972 CTTACTTAGACCTACTGGAGCTCCTCCTGGCCTTCATTTTCGCCTGGTGGGAAGCCTAGCTCCAGGACAGATGAGTACA-----CAGTACATCAGGGCAGAGCATCCATTTACTCCATTA----------TGAAGGTCTTGTCTGTCTATATGCCATCAGCTTTGTCAAAGAGCACTTGGGTTTGACTTGTCT s mm3.chr11 80263345 177 + 122862689 CTTTCTGAGATCTGGGAGAGCTTCT----GCTCTCACTTTCACTGGGTACAATGCCTACCTGCAGGACAAAGGGGCACAGTGGGAAGAGC------AGAGAGAGGCCCTGTTTCTCATTGTGACGGTAAGTGAAGGCCTTATCTG--TACAGGCT----TCTGTGACAAGTGGCTCTGGAGTCTGGCTTCTTT s rn2.chr10 61896743 154 + 106208427 ATTTCCGAGAGCTAGTAGAGTTCCT---GGCCCTCACTTTTACTGGTTATGATGCTTAGCTCCAGGACAAAGGGGCATAGTGGGAAATACA----GAGAGAGAGGCCCTGTTTCTCATTG--------------GGCCTTA------------------TCTGTGACAAGTGGCTCTGGAGTCTGGCTTCTTT a score=29362.000000 s hg15.chr22 14736277 368 + 49476972 TTATTTCTTTTATCTTCCTCATTGTTAGTCACCAAATCTTGAGTTTACCTGTGAGAGCCTGGGCGATCAATT---TAAGTTGTTCCAGT-TAGGCTTTTATTGCAAAGCAGTCATTTGTATTTTCTTA------AGGATCTTAGGAAAAGCATGAATTAGAGCAGAGCCTACCCAGATATAGAGAGAACTAGATGGCTGTGGGTTCTGGAACTGGCTACACTCTTTGA-CTGTCTCTTGGTTTTGTGTTCAGCTCCTCCTCATGATTTTCATCTTTCTGTATCCTTTCAGCTTTTGCCCCAGATAGTAGTCCCTTCATTATCTCAGTACTTGCATGTCTAAAATTCCAGAAAGAAAATATGATTCAGCTAAAAAATATC s mm3.chr11 80263609 320 + 122862689 -TTTCTTTCCTCCTGCCCTCTGTGGGAGGC----------------ACCTGTGAAATC-----GGATGGATCCGCTGAGGTATTT-AGTGTAGGCTTTGGTTATTACCAAGTCT--CTTATTTTATCA-GAAAGTGGGCCTAAAGAAAACCACGAGTCA-AG---AGCCATACCAGGAAGAAACATCACTA----------------------AGCCATAATTGCTGCTCTGTTTCTTGGCTTTGTGTTTAACTCCATTACATGGTTCTCTGATTTCTGTGTCATTTCAGCTTTAG-CTCAGCCAGTGACCCCTTCATTACCTCAATA-TAGCTTACCTGACGTTCTTG-----ATATGTGGTTCAGCTGGAAAGTACC s rn2.chr10 61897178 322 + 106208427 -tttccttccTACTGTCTTCTTTGGAAGTC----------------ACCTTCGAGATC-----TGATGGATA-ACTGAGGTATTTTAGTGTAGGCTTTGGTTATTACCAAGTCTTTCTTATTTTATCAAGAAAGTGGGGCTAAAGAAAAGCGTGAGTCA-AGTAGCGCTATACCAAGAGGAAACAGAACTG----------------------AACCACA---GTTGCTCTGTTTCTTGGCTTTATGTTCAACTTCATTACATGGTTTTATGATTTCTGTGTCATTTTAGCTTTAG-CTCGGCCTGTGACCTTTTCATTACCTCAATA-TTGC-TACCTGAAGTTCTTG-----ATATGTGGTTCATCTGAAAAGTACC a score=43718.000000 s hg15.chr22 14736904 293 + 49476972 CACCTGAGGCTTCTTTTTCCTTCCCAAGCCACATCACCATCCTGGTGGAACTCTCCTGTGAGGACAGCCAAGGCCTGAACTACCTGCGGTGGGGAGCACCTCAGGGTTTGCCCAGGCAACCAGCCAGCCCTGGTCCAAGGCATCCTGGAGCGAGTTGTGGATGGCCCCGTGCCCCACCAGACAGTGCGCCTGGAGGACCTGGATGAGAGCGGTGAGCCCCAGGCTGGGGAGCCA-----GTGCTGCCTGGCATCCTCCGGGCATCCTACCTGGCTGAGGGGCTGGGCCTGGGCCTGCC s mm3.chr11 79735220 280 + 122862689 CACCCATGGCTCCCTTTT-CTTCTGTAGCCGCACCACCCTCCTCGTTCAGCTCACCTTCGAGGGCAGCCGAGGGCCCAGCTACCTGC-CTGGGGAACACCTGGGGATCTTCCCAGGCAACCAGACCGCCCTGGTGCAGGGAATCTTGGAGCGAGTTGTGGATTGTCCTACACCACACCAAACTGTGTGCCTGGAGGTTCTGGATGAGAGCGGTGAGCCCCCGGCCCTGGACAAA-----TCTCTAC------TTCCCTCAGTCCCATCCCTG-----AGAACTGGGCCTGTGTCTGTC s rn2.chr10 61294049 284 + 106208427 CACCCATGACTCCCTTTT-CTTCTGTAGCCGCACCACCCTCCTTGTTCAACTCACCTTCGAGGGCAGCCGAGGCCCCAGCTACCTAC-CTGGGGAACACCTGGGGATTTTCCCAGGCAACCAGACGGGCCTGGTGCAAGGGATCTTGGAGCGAGTTGTGGATTGTTCTTCGCCAGACCAAACTGTGTGCCTGGAGGTTCTAGATGAGAGTGGTGAGTTCCTGGGCCCAGACAAAACAAACCTCTA-------TCCCCTCACTACCATCCCTG-----AGGACTGGGCTCCTGACTGTC a score=7111.000000 s hg15.chr22 14739414 30 + 49476972 GCTGGCCATGCCGTCCCGGGCTGAGAACTA s mm3.chr1 192379126 30 + 195869683 GCTCGCCATGCCGTCCCGGGTGGAGGACTA s rn2.chr13 94470148 30 + 105800825 GCTCGTCATGCCGTCCCGGGTGGAGGACTA a score=781.000000 s hg15.chr22 14739444 71 + 49476972 TGAAGTGTTGGACACCATTGGCACAGGCTCCTCTGGCCGCTGCCAGAAGATCCAGAGGAAGAGTGACGGCA s mm3.chr4 143894896 50 - 152921959 TAGAGTATTGGACTGCA----------CCCCTTTGGCCAGTGTCAAGATATCCATGGCAA----------- a score=48794.000000 s hg15.chr22 14739515 221 + 49476972 AGATACTAGCTTGGAAAGAACTTGATTATGGCTTCATGACAGAAGCTGAGAAACAGATGCTTATTTCTGAAGTGAATTTGCTTTGTAAACTGAAAAATCCAAACATCGTTCATTACTATGATCGTATTATTGACCGGACCAACACAACACTGTACATTGTAATGGAATATTGTGAAGAAGGAGACCTGGCTAGTGTAATTACAAAGGGAACCAAGGAAAGG--------------- s mm3.chr1 192379632 236 + 195869683 AGATCCTGGTGTGGAAAGAGCTTGACTATGGCTCCATGACGGAGGTGGAGAAGCAGATGCTTGTGTCTGAAGTGAACTTGCTTCGGGAGCTGAAACATCCAAACATCGTCAGTTACTATGATCGCATTATTGACCGAACCAACACAACCCTGTACATCGTAATGGAATACTGTGAGGGAGGGGACCTGGCTAGTGTCATTTCAAAGGGGACCAAGGATAGGTAAGGTGAAAGAGCC s rn2.chr13 94470701 236 + 105800825 AGATCCTGGTGTGGAAAGAACTTGACTATGGCTCCATGACAGAGGTGGAGAAACAAATGCTTGTGTCTGAAGTGAACTTGCTTCGTGAGCTGAAACATCCAAACATCGTCCGTTACTACGATCGTATTATCGACAGAACCAACACAACCCTATACATTGTCATGGAGTACTGTGAGGGCGGGGACCTGGCTAGTGTCATTACAAAGGGGACCAAGGATAGGTAAGCTGAACGGGTC a score=53202.000000 s hg15.chr22 14739736 241 + 49476972 ----------------------------------------------------------------------------------------------------------------------CAATACTTAGATGAAGAGTTTGTTCTTCGAGTGACGACTCAGTTGACTCTGGCCCTGAAGTAATGCCACAGACGAAGTGGTGGTGATCATACTGTAGTGCGTCGGGGTCTGAAACCAGCCAGTGTTTTCCTGGATGGCAAGCAAAACGTCAAGCTTGGAGATTTGGGGCTAGCCAGAATATTAAACCACGACACGAGTTTTGCAAAAACATTTGTTGGCATACCTTATTACATGTCTCCTG s mm3.chr1 192379868 353 + 195869683 CCACGGTTCGTATCTAATAATAATTAACTTCCATGTTTGTACGCTCTGAATGACTTGCCCCAGATTGAAGATGGCTTTTATTCAGGGTTGTGAAATGTG------CTTTTTCTCCAGACAGTACTTGGAGGAAGAGTTTGTCCTTCGAGTGATGACTCAGTTGACGCTGGCCCTGAAAGAGTGTCACAGAAGGAGCGATGGTGGCCACACTGTGCTTCACCGGGACCTGAAGCCAGCCAATGTCTTCCTGGACAGCAAACACAATGTCAAGCTGGGGGACTTTGGACTAGCTAGAATATTAAATCACGACACGAGTTTTGCAAAAACGTTTGTTGGCACACCCTATTACATGTCTCCTG s rn2.chr13 94471063 357 + 105800825 CCACAGTTCATGCCAAA-GATAATTTACTTCTGTGTTTGTACACTTTAAATGATTTGTCCGGTATTGAAGATGA-TTTCATTCAGGATTGTGAACTGTGTGATTGCTTTTGCTCCAGACAATACTTAGAGGAAGAGTTTGTCCTTCGAGTGATGACTCAGTTGACACTGGCCCTGAAAGAGTGTCACAGAAGGAGCGATGGTGGCCACACTGTACTTCACCGGGACCTAAAGCCAGCCAATGTCTTCCTGGACAGCAAGCACAATGTCAAGCTTGGGGACTTTGGGCTAGCTAGAATATTGAATCACGACACAAGTTTTGCAAAGACGTTTGTTGGCACACCCTATTACATGTCTCCTG a score=3482.000000 s hg15.chr22 14739977 82 + 49476972 AACAAACGAATCACATGTCCTACAATGAGAAACCAGATATCTGGTCATTGGGCTGCTTGCCGTATGAGTCGCGTGCATTAAT s mm3.chr4 143895356 80 - 152921959 AAAAAGTAAACAGAATGGCCGGTATTGAGAAATTAGGTATATGGTCACTAGGCTGCTTGT--TATGAGTTGTGTGTGTTAAT a score=12006.000000 s hg15.chr22 14740059 142 + 49476972 GCCTCCATTTACAGCTTTTAGCCAGAAAGAACTC-GCTGGGAAAA-TCAGAGAAGGCAAATTCAGGCGAATTCTATACCATTACTCTGATGAATTGAATGAAATTATTATGAGGATGTTAA---AGGATTACCATCGACCTTCTGTT s mm3.chr4 143895643 126 - 152921959 ACCTTCATTTAGAGCTTGTAACTTAAAATAATGCTTCTGGAAAAAATGAGAGAAGGCA----------GACTCCATATCATTACTCTGAGGAATAG-----CACCCTTGCAGGGATGTTAA---AGGATTGCCTTTGACTTTCT--- s rn2.chr5 166978139 112 - 191625135 acccTCATTGAGAGATTGTGACTTAAAATAATGCTTCTGGCAAAA-TGAGAGAAGGCA----------GGCTCTGTATCGTCATTCTG---------------------CAGGGATGTTAATTAAGGATAACCTTTGACCTTCT--- a score=79021.000000 s hg15.chr22 14740201 850 + 49476972 GAAGAAATTCTCGAGAACCCTTTAATAG-CAGATTTGGTTGCAGAAGAGCAAAGAAGAAATCTTGAGAGAAGAGGGCGACAATTAGGAGAGCCAGAAAAATTGCCGGATTCCAGCCTTGTATTGAGTGAGCTGAAACTAAAGGAAATTCAGTTAGAGGAGCAAGAGCGAGCTCTCAAAG-CAGGAGAAGAAAGGTTGGAGCAGAAAGAACAGGAGCTTTGTGTTTGTGAGAGACTAGCAGAGGACAGACTGGCTATACCAGAAAATCTGTTGAAGAATTACAGCTTGCTAAAGGAACAGAAGTTCCTGTCTCTGGCAAGTAGTCCAGAACTTCTTAATCTTCCATCCTCAGTAATTAAGAAGAAAGTTCATTTCAGTGG-GGAAAGTAAAGAGAATGTCATGAGGAGTGAGAATTCTGAGAGTCAGCTCACATCTAAGTCCAAGTGCAAGGACCTGAAGGTCCTTGCTTCATGCTTCATGCTGCCCAGCTGCGGGCTCAAGCCCTGTCAGATTTTGAGAAAAATTATCAA------CTAAAAAGCAGACAGATCCTGGGCATGCGCTAGCCGGGTAGAGAGACACAGAGCTGTGTACAGGATGTAATATCACCAA-CTTTTGGAGACTGATGTTCAAATGCT-GTAGCATTACATACTTGGTTCCATGAGCCGTGCCTTTTTGTATAGTCCACATGATATTTCAGAATTGGTGTTGCTGTTCTT-CAGCAACTGTTGTACAAAATGTTCACATTTAA----TTTTTCTTTCTTCTTTTAAGAACACATTATAAAAAGAA---TACTTTCTTGTTTGGTTGGGCTTTTAATCCTGTGTGTGATTACTAGTAAGAACAT-GAGATGTGACAT s mm3.chr12 58812606 777 - 114462600 GGGGAAATTCCTGGGAAGCCTCTGACAG-CAGATTTAGATTTAAAAGAGCAGAGATGAAAACAAGAGAAAAA--------CTCTAGGAGAACTTGCAAAGGTACAGGATTCCTACCTTGT-----GTGAGCTGGAAAT---------ACAGTTGTAGAAAGGA-AGCAACTTGTCAAAG-CCAGAGAAGAAACGCTAAGGAAGAGGAACCTG------TGAGTCCAAGAGACATCAGCATGGGACAAAGGGCCCAAAGCAGAA------------------AGCCCGCCAAATGAAAAGAAATTTCCATCTATGGCTTGTAATCCAAAACTTCTTTATTTTCCATCCTCAGTATTTAAGAAAAAATGTCTTTCCAGTGGAAGAAAATAAAGATAA---AATGAGAAATGACAATTCAGAGAGACA-TTTGTCTCTAAATCACAATTCCAAGACCTGAAG-----------AGACTTTATGCTGCCAGTCTGCAAGTTCAAA-CCTGTTAGAAATT----AACACCA--AAAACCTTCTAAAGAACAGAGAGATTCTGAGCCAGCT-------------GAAACACAA----GTAGGTACAATATGACACTATTAATCCTTTAAAGACTCATATTTAGCAACTTGTAGCTTCACACACTTGATT-CATGACACTTGCCTTTCTCAACAGTAAACAGGATACT---GGACTGTGTTTGCTGTTTTT-CAGCAACCACGGTATAAGATGTTCACATCTAGTTTCTTTTCCTTTTCCTTACTATGATCACCTTATAAAATGAATTCTACTCTCCTGATTGGCTGGACTATTAACCATAAATATGTTTACTATTCAGAATATATAGTAGTGATAT s rn2.chr6 68353704 793 - 146362310 TAAGACATTCCTGAGAAGCCTCTGACAGGCAGGCTTAGATCTAGAATAGCAGAGAAGAAGTCTGGGTATAAA--------GACCAGGAGAGCTTGCAAAGGTGCAGGATTCCTTTTTTGT-----ATGAGCTGAAAATTAAGAAAATACAGTTGTAGAAAGGA-AGCTACTTGTCAAAAACCAGAGAAGAAACACTAAGGAAATGGAACCTGAACTTTTGAGTCCAAGAGATATTAG--TGAGACAAAGAGCTCAGAGCAGAA------------------ATCTTGCAAAATGAACAAAAATTCCTATCTACG-CTTATAGTCCCAAACTTCTTTATTATTCTCCCTCAATATTTAAAATTAAAACTATTTTCAGAGGAAGAAAAGAAAGATAA---AATGGGAAAGGAAACTTCATAGAGACAGTTTATCTCTACATAAAAAGGTCAAGATCCGAAG-----------AGACTTTATGCTGCCAGCCTGCTGGTTCAAA-TCTATTGGACATTTA-CAATACCATCAAATATTACCTAAGAACATTGA--TTCTGGGCCAGCT-------------GAAACACAA----GTAACTACAATATGACACTATTAATCCTTTAAACATTCTT--TTAGCTACT-GTAGCTTCTTATGTTTGTTT-CACGACTCTTACCTTTTTCTGTAGTAAATAGGATACT---GGACTGTGTTGACAGTTTTTTCAGCATCAATGGGATAAGATATGCACATCTACTCTCTTTTCTTTTCTTCCCCTAAGATCACCTTTTGAAATGAATTCTACTCTCCTGATTGAGTGGACTTTTAACTATAAATATGACTACTATTCAGAACATAGAGTAGTGATGT a score=8658.000000 s hg15.chr22 14741051 50 + 49476972 TCTAAATCTTGGGAGAAAAAAATAACAAGAAAAAAATATTTAATCAGGAG s mm3.chr1 192389113 50 + 195869683 TATAGATCTTAGGAGAAAATAATGTTAGGGAAAGAATATTTAACCTGGAG s rn2.chr13 94481931 49 + 105800825 CATAGATCTTAGGAG-AAACAATGTTAGGGAAAGAACATTTAACCTGGAG a score=749.000000 s hg15.chr22 14741101 74 + 49476972 TAGCACTCACTGCATAGTTTTAAATGACTGAGTGGTGTGCTTACAATTGTCATGTCTAGATTTGAATTTTAAGT s mm3.chr4 143896523 65 - 152921959 GAGTGCTTGCTG---------AGACGTCTCAGTGTGGCACCTGCCACCATCACACCAACTTTCAAACTGGAAGT a score=21610.000000 s hg15.chr22 14741175 152 + 49476972 CTGAGATTTTAAATGTTTTTGAGCTTA---GAAAACCTAGTTGGATGCCATTTGGTCATTAATACCATGACATCTTGCTTATGAATATTCCATTGCTCTGTAGTTCAAATCTGTTAGCTTTGTGAAAGTTCATCACTGTGATGTCTGTATTCTTT s mm3.chr1 192390415 145 + 195869683 ATGAGGTCTTAAATGTTCTGGAATTTTAGAAAAAACTTAATTGGATGCAA-TTGTTTATAATTAACAAGTCATCTTATTTATAAATTTTCCA-----ATATAATATAAATCTAT----TTTGTGGAAATTTATCACTGTGATGTTTGTATTCTCT s rn2.chr13 94484558 141 + 105800825 ATGAGGTTTTAAATGTTCTTGAACTTCAG-AAAAACTTGATTGGATACAA-TTGTTTATAATTAACAAGTCATCTTATTTATAAATTTTCCA-----ATATAATATAAATCTAT----TTTGTGGAACTTAATCACTGTGACATTTGTATTC--- a score=9638.000000 s hg15.chr22 14747553 98 + 49476972 GGAGGGACTAAAGGAGAGGGGGATGGGAGGGTGTGTACTGGGGCCTGT------ATTCTACGCTGGGCAGAGTCCCAGCCACTCCTCATGCAGCTTGTGAGGAA s mm3.chr14 20892088 93 + 115844145 GGAGGATCTCAAAGGGAAGGAAAAGGGAGGACG------GCGCCTTGTGAGCTGACTTTGGGCTAGACAGAATGCCAGTCACTCCTTA-ACAGAT----AGGGA s rn2.chr16 1460029 79 + 84226546 -GAGGATCTAAAGGGGAAGGAAAGGGGAGGTCG------GTGCCTTGT-------------GCTAGACAGATTGCCAGTCACTCCTTA-ATAGAT----AGGGA a score=28004.000000 s hg15.chr22 14747673 345 + 49476972 aggtgagtaaactgaggctcagagagatcaGTGGAGTCATCTGAGAGAATGTGCGTTGATGCATGTTCCCTGCTGGGCACTTCCTCtctcatctaatccctgaggccagccctgtggggtgggtatcattctccccaatttatagaggaagaaacagcaccagagagggaaagggactcaaccaaggCAGGGGATCCTGAGGGCTGGTCTGGATCCTTTCCCCAAGTGCTTAATCCCACAGTTCAGAGGGCCCTGAAAGGCGCTAGGGGCTTCTATCTTAGCACAGGGCACTTCTGCCAAGGTCG-TGGCAACGA-CTGGGGGGGCAGGAGGCCTGGATGCTTTGTG s mm3.chr14 20892351 259 + 115844145 AGATAGGGAAACTGAGGCT-AGA--------TGG-----TCTGAAAGAACTAGTGT---TGTGCATTCACTGGTGGGCGCGTCCTTTCTTA--TGCTCCCTGAAGTCAG-CCTGT-----------------------------------------------GAGATGAAAAGCGATTCACCCCA--CAGGGACTCCTTTAA--TGATCTGGGTTAATC--------------TCCCCTCTCTCTGTGGGCCCTGAAAAGCAACCAGAGCTTTAGTCTTGGTGCCAGGCATTTCTGCC--TGTCTGGAACAAGAACCCGAGAGAGCGAGAGGCCTGGG-GCTTGGTG s rn2.chr16 1460099 265 + 84226546 AGATAGGGAAACTGAGGCT-AGAGGCGTTGATGA-----TCTGAGAGAGCTAGTGT---TACGTGTTCACTGGTGGGCGCGACCTTTCTTA--CACTCCTTGAAGTCAG-CCTGT-----------------------------------------------GAGAAGAAAAGCGATTCACCCCA--CAGGGACTCCTTTAA--TGATCTGGGTTAGTC--------------TCCCGTTTCTCTGTGGGCCCTGAAAAGCAACCAGAGCTTCAGTTTCGGTGCCGGGCATCTCTGCC--TGTCT-GAACAACAA-CCGAGGGTGCCAGAGGCCTGGG-ATTTGGTG a score=104327.000000 s hg15.chr22 14748345 1307 + 49476972 TCCATCTCCATCCAGTCC---CCCGTCTCTACCCCAAAC----------AGCT-CAGTTCCCCAGAGAAGCTCCCTGGAAACCAGGAGGCTGACTTCTTCA-CCAACTGCAGAACCACCTGAGGCCACGTGGCAGGTGAGTCGGTGGC-----CTTTCTCCTGGACTCGCCTGCCTGGCTTCTTAA-GGCTGTGCTGGGCTGGCCTGGGTCACTCACCCTTTGGAGTCTGGCTTCTTAAGCAATGTCCTATAAAGCCAGGGCTGAGCCTCCGCAGGCCCTCTGAGATGGAGCTGGCCTCCGGGGCTGCCCGACCCAGCAGCTGTGACCTCCCACCCCAGATCCTGGCTCCTTCTCTCTTGCCAGCTCTACTCCAGGCATCGAGCTtccctctctctctcttttttggtctctctcaaatctttctcttttcttatcctctctccctccaccccttgccattttagtcagtctttctctttccttcttctct-tttgtctctcaaactcttttttctttctatctTGGTTCATATCTGTTCAGG--GAAAGCCTCTTTCTGTCTCGGCctctccttttttccttttcactgtttattcttccctctctcctttatctctccgttgctctacttctctgcctttttctgagtctgtttcctctcaccatctc---tctctccatccgtccctccctgtatctgcccctctctccatctcgctgctgtgtccagctctctctctcgctcATTCCTTCCTCGCCATCTGGGGATCTCCCCGGCTCCGTGTCCCCTGCATTGCCCCGCGCCCCAATCACCGGCCAAAGCGCCCGCGGAGCAGAGCAGGGCCAGCCCGGCCAGCGCGCAGAGCAGGGGCCGCATGGTG--------CCGGCCTGGCTGAAAGCAGCACGGCATGTGCCCGCAGCCGCCCTTCCCGGATCGTGCCCGGCAGGCCCTGGAGACAATGCTCTCAGTCCGAGCCAAAATTCCTGGGCGGCTCCGGGCTTTCTGGCTGGAGAGAA----CCCGCCCCCTCCAGAGGCCCCTGGGCACCCCGTGGGCAGCGCAGAACCCAGAAACCCCCGGGAGCTGAGGCACCGACTT-------GCCACCCGGGCGCCTTCGGAGGAAAGGGGGCCGCCCCCCGAGTTGAGTTGGATGGAGGGGTTGGGTGAGGTCATGGGCTCAAGGCGACTGAGCCTGGGATCAGGAGTTTG-TTATGAGcccatttcacaggcaggcgaactgagactagagagaagtgtcttcctcagcatcactctcagccatggcacaagatctgaacccttgtctcctgGGAGTGTGGAAGGTTTTCTCTGCCTACC s mm3.chr14 20892615 1046 + 115844145 TCTGCCTCAACACAGCCTGCGCTCACTCCTCACCTAGAC----------AGCCATAGTTCTTCAGC----CGGTCTGGGCACCTGAAGGATGGCCTCCTCAGCTCACTACAGA--CTCCTCAGGCCTCCAGGCAGGTGAGACTGTACC-----TTTTTT-----------CTGTCTGTCTCCACAGTGGTGGTGCTGGCCCTACCTGGACCGTTGACCC-TTCAGGCTCCCCTTCCAATAGGATGCCCTTTGGAACC-------TTCCTCTGGACGCTCT--------------GGCGGGAGGGCGGCCACACCCTGCAGCTG-AACCTCCGCC------------------------------CT---CTCTAGACATCCGGTTGCCACATTCCTTTC-------------CCCAAATTTTTATT--------TCCTCGGTGGGTCC------TGCCATT--------CCTATTTCTTTC---CTTGTTTGTGCTTTTCTCAAACTCCCTCCTCTTGCTCTCCTCACCCACATGCGTTTATCTCGAAAG----------------------CTCTCTTACTCATC----TTT-------------CCCCTTTTCTGTCCTTCGAt----gtctctg-----------------attctttctccatctctgttccctcct----cttttcccggtgtct---------------------ctgtctccggctc-----ctctctCATTCTTACCTCGCCGTCCGGGGGTGTCCCTGGGACCTTG------------------GCCCCATTCGCC--------CGTCC-CGGCACGGAGCAGGGCGAGCCCGGCTAGCGCGCAGAGCAGCGCCTGCATGGTACGTAGCCACCGGAGCCACCGAGTGAAGC----AGTTTGTCCGTAGTCGCCTCCCGGGGATCACGCCCGCCCGGCCC--GAGGAAATG----CAGTCCGAGCCAAAATTCCTGGGCGGCTCCGGG-TTTCTGGCGCTAGAGAACCCGCCCGCCCCCTCTAGAAGCCCCACCGTGCCCTGCAAGAAG-GCGCAGCCCGGGATCCC---ATCCCAAAGGCAACAGCTCTGTCAGGGCCTCCCATCCAGCGTCCCA----------CCTACCCCTGCCCTTCG--GGACCAGGCACCTAAGTGGGGAAGAAGGCTCCAGGC---------------------TCTGCTTCTGAGCCCATTTCATAGACAGCCAGATTGAGCCCAGGAATGAGAACCTTCCTCTGTATTCCTCCCAGGC-TGGCACAAGTTCTGAATCCCGGACT----------------AAGTCCTCTGCCTGCC s rn2.chr16 1460369 1118 + 84226546 TCTGCCTTAACACAGCCTGAGCTCACTCCTCCTCTAGACAGCTAGGATGAGCCAGAGTTCTTAGAA----CGTTCTGGGCACCTCAAGGATGGCCTCCTCAGCTCACTACAGA--TCCCTCAGGCCTCCAGGCAGGTGAGACTGTACCTTTTTTTTTTT-----------CTATCCGTCTCCCCAGTGATGGTACTGGCCCTGCCTGGGCCATTGACCCTTTCAGACTCCCCTTCCAACAGGATGCTCTTCGGAACT-------TTCCCCTGGATGCTCT--------------GGCCCGAGGGCGGCCACACCCTGCAGCTG-GACCTCCGCCC----ATGCCGGCTAGTCTTCT----CCAACT---CTCTTGACATCCGGTTGCCACATTCCTTTC-------------CCCAAATCTTTCTT--------TCCACGTTTGTTCC------TGCCATT--------CCTATTTCTTTCCTTCTTGTTTGTGTTTTTCTCAAACTCCCGTCTCTTGCTCTCCTCACCCACATAC----ATTTCCAAAGCCTCTTTCGTTCCCAGACTCTCCTCTCTTACTCATC----TTTTTCCTTGATCTCCTCCCTTTTCTGTCCTTCGA------TCTCTG-----------------TTTCTTTCACCATCTCCGTTCCCTCCCTCTGCTTTTCCCGGTG--T---------------------CTGTCTCCAGTTC-----CTCTCTCATTCCTACCTCGTCGTCCGGGGATGTCCCTGGGACCCTG------------------GCTCCATTCGCC--------CGCCC-CGGCACGGAGCAGGGCGAGCCCGGCCAGCGCGCAGAGCAGCGGCTGCATGGTA---------GGGAGCCACCGAGTGCAGC----CGTTTGTCCGTAGTCGCCTCCTGGGGATCGCGCCCGCCCGGCCC--GAGGAAATG----CAGTCCGAGCCAAAATTCCTGGGCGGCTCCGGG--TTCTGGCTCCAGAGAACCTGCCCGCCCCCTCTAGAAGCCCCACCATACCCTGAAAGAAG-GCGCAGTCCGGGATCCC---ATCTCAAAGGCAACCTCTCCATCAGAGCATCCCGTCCAGCTTCCCA---------CCCTACCCCTGCCCTTGG--GGATCAGGCACCGAAGTGGAGATGGAGGCCCCAGGC---------------------TCTGCTTCTGAGCCCATTTCACAGTCAGTCAAATTGAGTCTCAGATTGAAGACCTTCCTCTGTGTCCCTCACAGGC-TGGCACAAGTTCTGAGTCCCGGACTCCTAGGATCTTGGAA-ATGTTCTTTG------ a score=2327.000000 s hg15.chr22 14749897 61 + 49476972 GAAACTTCCCCTATGGGACATGCCCATCCAACAAGTGCAACAAGAAATTA------AGTTTTAGTGA s mm3.chr14 20895228 67 + 115844145 GACACTTCCCTTGGGGAACACATCCATCCAACAAGTGTAAAAACAAACGATAAAGCAAGTACAGTGg a score=338.000000 s hg15.chr22 14749958 182 + 49476972 AAACACCAAGCAAAAAAGC-------------TACAGCT---CTAACTTCTCTGCTG-------CAGAGCCCTGAGTGCCTTGCCTGGCTGTAAGAGGAATACTTTCATCACCAAGCCTAGGAGAGTGCCTT---TGTCCATCGAGGGTCCCCATTGGGGTTAACTGGAGCCCTTGCAGATCAAGGCTGCCTCTGCCTTCTGTGTTCC s mm3.chr14 20895405 184 + 115844145 caaaacaaaacaaaaaaaacCAAGAAACCAAGTACAGTGATGCTAATGAATCTGCCGAGCCAGCCCACTCCCAGAGTGCCT-----AGCTTCAGGCCAAACACCTTTGTGGCCAAGCATGGGCGAATAGTTTCACTGTACGTCAA---------TCTGGGCTCAAGAGACTGTCTGAGGGTCACGGCTGT----------TAAATTAc a score=34752.000000 s hg15.chr22 14750140 351 + 49476972 TGTCTG-------------------TGGCTGTGCTGTTGTCCCA---------GTCACCACCGTAACCAGTGATCCAG--TTCTCACTCCCTCCTCCAGAGCAAGATAATAGCCTCAGATGAAGAAATTCTGGTTCTGAGCCCGAGAATCTGAGAC--AGACTCAGATCTAAATCTTTTTAAA-----------------------------------------------------GCCTTCAAGGAGATTATGATGCCTACGTGAGCTGG-CTCAGAAGAAGAATTTATTTCAGGAATGCCAAGAATTTCTCATGCTTGGTGGTAGGACATTCCTTGATAATTTAGCCAGGTGAGAAGTTGTCAAA-GAACTG----CCAAACCCAT-AAGGATTCTTGTAGCTCACAGCCAGGAGGCTACCTTATATTTTGAATTTAAGAT s mm3.chr14 20895754 431 + 115844145 TGTCTGCAGCATCAGCATGCTGGGTCAGCTGTGCAGCTGGTGCACACAGCAAGGGCTCTGTATTCATCAGTAGCTTTTCCTCCTCGGCTCCCCCTCGCCTGTAGGCC-GTGGGCTCTGACACAGAAATCCAAACTAGGAG--------TCTGCCACCAAGACTTGGATCTAATTCTTAAAAAGCAacacacacacacacacacacacacacacacacacacacacacacacacCCCGCCCCCAAGAGGATTAGGATGCCCAGATGAGCTGGTTTCAGAGGAAGGATTTTTCTCAGTAATGCCAAGAATTGGCTATACA---TGATAGGGCGTTCTGATTTAGCTTAGCCAGGCATGAGATTGTAGAACAAAACGAAACCTAAATCCACAAAGGATTTGTGCCGCTTAGAGCCAGTGAGCTACTTAATTATTTGAATTTAAAAT s rn2.chr16 1462872 382 + 84226546 TCTCTGCAGTACCAGCATGCTGTGTCAGCCGAAAGGCTGTTACACACCACA--GTCCCTGCATTAACCAGCCGTCTTTCCTTTTCATCTCCCCCTCTCCTGTAGGCT-GTG-------ATGCAGAAATTCAAACTAGGAGCCATCAGGTCTGCCACCAAGACTTGGATCTAATTCTTAAAAAGCA-----------------------------------------------CCCTCTCCCCTTGAGGATTAGGATGCCCAGATGAGCTGGTTTTGTGGGAAGGATTTATCTCGGTAATGCCAAGAATTGGCTATACT---TGATAGGGCATTCTGATTTAGCTTAGCTGGGCGTGAGATTGTAGAACAAAATGAAACCTAAACCCAC-AAGGATTTTTGCAGCTCAGAGCCAGTGAGCGACTTAATTACTTGAATTTAAAAT a score=1482.000000 s hg15.chr22 14750491 34 + 49476972 TAAGGGAAAAAAAAACACAAAAACATATACAATA s mm3.chr14 20896296 30 + 115844145 TAAGTGAATAAATG----AATAACGTATGCAATA s rn2.chr16 1463377 24 + 84226546 GGA------AAATG----AGCAACATGTGCAATG a score=15537.000000 s hg15.chr22 14750541 241 + 49476972 GAGCATAAAGTAATTAACTATACAGAGAAAAACATGAAAGTCTTTTCTGTTACGAATTCCCTCTGTCCAAGATTCA--GGTCCAGTCC-----CCTCGGCTTGCTAGGCTCTGCCTGTTCCACATCTATGCATTCCCCATCTATCTAATGTATATTCAGACACAAATGTATATACATGAGATCAAATCATAGATATTTTGAAGATTTGCTTTCATTCATGTTTACCTCAGTCATAACATTAAATCTTg s mm3.chr14 20896880 212 + 115844145 AAGC--AAAGTGATGAAGTACATTATGTAAACCATGAACACC--CTCTGTCA------CTCGCTGTCCCTTCTCCACCACCATAGTCC-----CTGCAGCTTAGGGTCTGCTTCCTAGTCTCTGTCCACAAATTCTGCATCTATTTAGTATACATTCAGACATATCTA---------------GAATGTCAGATATTTTG------TTTTTCCATTTCCATTTACCTCAGTTATATCGCTAGCTCTTG s rn2.chr16 1463971 194 + 84226546 GAGC--AAAGTGATGAAGTATATAGTGTAAACC-------------------------CCCTCTGCCCCGGCTCCATCACTCTAGCCCAGTGTCTGAAGCTTGGTGCCTTCTCCCTAGTCTCTGTCCACAGACTCTGTATCTATTTAATATCTATTCAGACATACCTA---------------AAATGACAGATACTTTG----------TACATTTATGTTTATCTCAGTTATA--GCTACCGATCA a score=14665.000000 s hg15.chr22 14763561 113 + 49476972 AAATGTGTGTGGAATTGACGTATGGTGGAGGTGTCACTTTATC-TGGTGCAGCAAGGCGGAAAGAGCTTTGGGAAAGGAGAGCAAAGAT---GGTGGTGGTGAGGGTAAGGTGTTTT s mm3.chr14 20915358 113 + 115844145 AGATGCATGTGGAACTGATGTTATGTGGAAGTTTTACTTTATCTTGGTCCAG--AACCAGAAAAAGTTTGGGGGTAG--AAGCTAAGATATCAGTGGGGAGGAGGGGAGGGGGTGCT s rn2.chr16 1491840 113 + 84226546 AAATGCATGTGGAACCGATGTTATGTGGAAGCTTTAATTTATCTTAGTCCAG--AACCAGGAAAAATTGGGGGTTAG--AAGCTAAGATATCGGTGGGGAGGAGAGGAGGGGGCGCT a score=58675.000000 s hg15.chr22 14763686 541 + 49476972 AGAGCAAGGGTATACAAACCAAAAAGTCAATTTAGTAT--GTGGCTTAGCCCAGAGCACACGAGGGCAC-CAACACAGCCAAAGTCCATAAGAAGGTAG-CTGAAGTCCTCT----GCCAAA------TAGGACTGAAAAGCTAAAATCTTTCTCAGTTTCTTTCTTAAGCAACAACTGGTCTATTCAAGCTCAACCAGAGCATATAAGAGAAAAAATGACTAATGAGAGGCTCTTAAATAGTTTTCAAGGACAGACACTTTCTAGAAAGTAGAAAAGATCACTGAGTAAATACTGCACCTCCCTTACCCCACAAACACACACAAAAAAGATGAGGATGTGTAGAGCAAGCT-TGTGGACATCCTCAAGTTTGGTTTTGATGCTTCTGTTGGTAAGCAGTCAAGATGGTGAGAGATGCCATCCCAAAGAGGAAAGTCTGTAGGAACCAGAGTAGCTGAGCGTGACCACTTGTGATGCCTTTATGCCTAAAAAAGAAAAAACAAAATTTAAACACCAGAATGTTAATCTTACAGTTTCATGGGAATTATTGTCTTCT s mm3.chr14 20915837 509 + 115844145 AGAGCATAGGT----GCACCCACAAATAAATCTAGTGT----GTTTTAGCCAAAAG-----GCAGGAAAATGACTCAGCTAAGGACCTCAGGAAAGTGGCCTGAGGCCATCTTCAGGCAGGAGGTCTGCAGAGCTGGAAGGGCAGGGTCTTTCTTA-TTTCTTTCTTAAACAAGAA-AGATCTATCCAAGGTTAGTCAGAGCACC------AAAATAATAGTAACCAGAGGGTCTCAGGCAGGTT-CTTCGACAGACACTGCCTAGAAGACAG-GGAGGCCATCATGGTAC----------CCAGGGCCCCACTGAAA-----GGAGGGCTTGAAGAGGTGGAGAGAAACTTGCTCTCTCTTTTTTAATTGTGTTTTTGGCGCTTTGATCTGTAAGCAATCAGGATGGAGAGAGAGGCTACACCAAACAGAAAAGTCTGTAGGAACCAGAGGAGCTGGGCCTGGACGTCTGTGATTCCTTTACGCCTGTAAGACAG-----CAAATTTAAACAATAGAATTTTAATGTT--GGTTCC--GGGAACAACTGTATTCT s rn2.chr16 1492288 512 + 84226546 GGAGCAAAGGT----GGACCCACAGACAAATCTAGTTTACTTGTCTCAGTCAAAGG-----GTGGGAAA-TGGCTCAGCTAAGGACCTCAGGAAAGTGGCCTGAGGCCTTCTTCAGGCCAGAAGCCTGCAGAGCTGGAAGGGCAGGGCCTTGCTTA-TTTCTTTGTTAGACAACAATAGGTCTAACCAAGGTTGGTCAGAGCACC------AAAATCATAGTAACTAGAGGGTCTCAGACAGGTTTCTATGACA-ACACTACCTAGAAGACAG-AGAGATCATCCTGGAAA----------CCAGGACCC-ACTGAA------GGAGGGCTTGAAGAAGTGGAAAGGAAACCCCGCTTTCTCCTTTAATTATGTTTTTGGTGCTTTGGTCTGTAAGCAAACAGGATGGAGAGAGAGGCTACACCAAACAGAAAAGTCTGTAGGAACCAGAGGAGCTGGGCCTGGCTGTCTGTGATTCCTTTACGCCTGAAAGAGAG-----CAAATGTAAACAACAGAATTTTAATGTT--GGTTCCA-GGGAACAATTGTCTTCT a score=16238.000000 s hg15.chr22 14769825 149 + 49476972 TTATAATCCTTTTAAGAAGAAAGAACATCCTTAATTTTTTGAAAAGACTATTCTGTGTCCGTTTTATAATTTTTTGGCCACTGAAAAAGATATGTCCAATCATAGACACAGTGAATATAACAGGTGGTAGTTTCAAGTGTTGACATTTG s mm3.chr8 92098512 138 - 128923138 TTATATTGCTTTTATGGAGAAAGATCTGGCTTAATTTTTTGCAAAGATTAATTT-TATCTATTCTGTAATTTCATATCTGGTGAAATAGTACCTTCTAACCACAGACACATTGAAGACAATAA----------CAATAGTTTACAATTA s rn2.chr16 53942067 136 + 84226546 TTATACTGCCTTTATGGAGAAAGATCTTGCTTGATTTTCG--AAAAACTTATTT-TATGTATTTTGTAATTTCATAGCTGGTAAAATAGTACCTTCTTACCACATACACACTGAAGACAATAA----------CAACAGTTTAAAATTA a score=20224.000000 s hg15.chr22 14770261 145 + 49476972 TGAATTTTTACAAGTCGTTGTTCCCATTCAAATTTTTGAATGCAACCGCAGCCTCTTACAAAACAGCCTTGTTAAACTAATTTGCTGATGTTAAATTCTTA-AGTAAAAGGGGAAT-TCCACAGGAATTTATATTGCTCTTTTATAa s mm3.chr8 92098650 140 - 128923138 TGGATTTTCATA----GCTGTTCTCATTTTTCTTCTT-AATGTAACTGCCACTTCTTA-GAAATAACCTTGCTAAAGTAATTTGTTTATAATTAATTCTTTAAAAAAAAGAGACAA-TTTTAAAGGTTTTATATTGCATTTCTATAA s rn2.chr16 53942203 140 + 84226546 TGGATTTTTACA----GTTGTTCTCATTTATCTTCTT-AATGTAACTGCCACTTCTTA-GAAATAACCTTGCTAAAGTAATTTGTTTATAATTAATTCTTT-AAAATAAGAGGCACTTTTTAAAAGTTTTATATTGCATTTTTATAA a score=2026.000000 s hg15.chr22 14773072 27 + 49476972 TTTAAATTTCAGTTTTATTTATTTAAA s mm3.chr13 87831875 27 + 116242670 TTTAAATTTCAGGCTTATTTATTTGAA a score=62137.000000 s hg15.chr22 14773353 794 + 49476972 aggtcatttctttttaatgctgaataacatttaattatttggatgtattacagtttatccatttacctaatgaaggacatcttggttgcttccaagttt-ggcaattatgaattaaaccgctataaacattatcgtgcaggtttttgtgtggacatgttttcaatttct-----ttgggtaaatactaaggagcattattgctagattatatgataagagtttgcttagttttgtaaaaagctgaccaactgtcttcgtaagt-gg---tgtaacatt-tgcattcctaccag--caTCAC-------------------------------CAGCATTTGGTGCTGTCTGCCTTTCATATTCACCAG-GCTTAATCTTCATAATTGTGCTGCACTTACTTTTAAAACGAAAGTCTTCAATTCATC---CCCTGCTTTGTTTCTTAA--ACAATCTTGAATG-AGTTCTTTAAAGTCTAAAAATCTCCAGAAAATAAAAGTATTAACTATATATTGAGAGCTGAAGTTTGCAGAGCAAAGGAGTGACACTAAATTG---GTGATGATATAAAACCTCAGCTGA--AAATTCTAATAGCTAAAGAAGAGGTATGATATTTTCATTTATA--GTTCCTTCTCAT-TTACATGTGTAAACTTAAGAAAGTCAGGAGTATTGTATTCTTAGGAAAATCAGAGCACTTCAAAAAATTGTTGTTTATAATGTTT-AGAAATTTAGACCGAACATTTTCATGGTATAGACTAGAGTAGTCTTAGCTAAACAGAACCATTTATTAGTCTGTTGTACATATTGTTTCAGACACATTTATTATATTATAAACAAAAGGAGAATA--- s mm3.chr8 92107203 764 - 128923138 aggtccttatttttaaacaccaaatgatgcttcgttacttgg-catgtcacagtttatccattagt---gtaaaagtaatcttagctgctcctatttttaggcaatcatcagtgaagatagtattaccatcctagtgtgggctttt--atctacatat----aacttatcacagttaagcaaacataaacaaaaagggtgaccagtttatatgataggggtatactaagttttgtcagaacatggcaaattgtcttt-caaattgatcttatgtcatcctgtcttcctaaaaaataatgactgagagtttgttgATGTATGCCACACCAAGACATCACTCAGTCACCTGTGCCTTTCAT-----CCAGTGCACAACCTTG----TAGTTTTGCACATGCTATTAAATCT-ATTTTCTCTACTCATT-TATGCTGCTTTCTTGATCAATAATAACCTAGAGTGAAGTTCTGGAATATATAACAA----CAATATTTTAAAGAAT---------ATTTGCACATAAAATTT------CAGAGTACATATTCTAAATCAGTAATAATAATAAAAAACCTCAGTAAAGCAAACTTTAGAAACTTTTAAC----CATAAGATTTTAAAACAGAATATTACTTGTTATGTTACATGC---------------------------TAATATCAGGAAATTCAAGGCAGTTCAAAAGA------ATTATGATGTTT-AAAATTTCA-----AACATTTTCATTGT---------AATAGATTAAGGCAAACAAAACCATTTGTTAGCCTGATACACATGCTGCTTCAGGCAACTTTGGTATGTGGTAAACTATAGAAGAAAATTA s rn2.chr16 53951493 759 + 84226546 AGGTCCTTAGttttaagcacaaaataatgtttcattatttgg-tgtgtcacagtttatccatgact---gtgaaggatatcttagttgcttccatttttacgcaatcattagtgaagataatat---catcctagtgtaggctttt-tatcgaaatat----aatttttcaccattaagcaaacacaagcaaacaggatgatcagtttataagacaggg-tatactaagtttagtcagaaagtg-tgaacggtcttc-caagt-gatcttgtatcattctgtcttcctataaaa-agtgac--agagttcactgatgTATGGCACATTGAGACGACATTCAGTGTCCTGTGACTTTCAT-----CCAG-GTACAACCTGC----TAGTTGTGAACGTGTTATTAAATCT-ATTTCCCCTACTCATCATATGCTGCTTTCTTGAGCAATCATAATCTTGAGTGAAGTTCTAGAATATATAACAA----CAGT-TTTTAAAGTTTT-----TAAATTTACACA-AAAATTT------CAGACGACATATTCTAAATCA---ATGATAATAAAAAAACTCAGTAAAGCAAATTCTAAGTACTTTTAAA----CATAAGATTTTTAAACAGGAGATTACTTGTAATATTATGTGT---------------------------TAATATCAGGAAATTCAAGGCCATTCAAAATA------AACATAATGTTTTAAAAATTCATAT--GACATTTTCATTGT---------AATAGATTAAGCCAAACAGAAGCATTTGTTAGTCTGATGTACATACAGCTTCAGATAACTTTGGTATGTGATCAACTATAGAAGAAAATCA a score=795.000000 s hg15.chr22 14774147 14 + 49476972 AAGTAATGTAAAAC s mm3.chr8 92107967 14 - 128923138 GAATAGTATAAAAC a score=13022.000000 s hg15.chr22 14774161 74 + 49476972 TACTTTGAGAAGGTGTCTAATAAAA-ATAAGATAATTATGGGATTTCTATTATCCACACTCAATTAAGACtaata s mm3.chr8 92107981 75 - 128923138 TATTTTGAGGGAATATCTAATAAAAAGAAAGATAATTGTGTCATCTGTACTACCCCAACTCAATTGAGAATACTA s rn2.chr16 53952366 74 + 84226546 TATTTTGAGGGAGTATCTAATAAAA-GAAAGTTAATTGTGTCATCTCTACTACCCAAACTCAATTGAGAATACTA a score=40084.000000 s hg15.chr22 14774253 343 + 49476972 tttttaaaGAAGAATTCCTGAATGGTAATTGATAATAC--ATTACCTTGGCTTTTCTGATAAAAATCCTTGAAGAATAAAAATAATTTCTTCCTACTTCTATATTACGATCAGCATAA-TTGCAATAATATGCTTCAATTGTTAGTAAAGTAACATTTATGTTTTGGGATCAATGAATT--TAAGCCAGCACTAAGAATTTTATTACTATTCCTCCACTACATTTCAGAGAGTTATTTCTTCATCCTTAAACATACCACAATAATAAGTCTGCTAGGTCCATTTAGATTTTCAACCCAACCCTAAAAGAAAGAAGGTTTCTATTGGTTACACATTTCAGAAGATTGTT s mm3.chr6 1414378 311 - 149950539 TCTCCAAAGTAAAACTTCTGAATAGCAACTGAGCATGTCAGTCGCCT---CTGTCCTGAT--------------GATAAAAGCAACCTTCTGCTGTCTC-ATCCTCCAGTTAG--TTACTCTTGGTCAGCTACTCCTTCTAT--------CACCACACATATTTTTGCATCAAGGAAACA-TAAGTCAACACTAAGGCCTCTGTTACTCTT------CTCGATTTCAAGGAGTTACTTTCTCATCTTTGTACTTACCGCAATAATGAGTCCGCTGGGTCCATTTAGATTATCAACCCAACCCTGGA--AAGAAAGATCTCTGTTGGTCACACATTTCAGAAAATTGTT s rn2.chr4 653574 307 - 183307734 TCTCCAAAGCGAAACTCCTGAATAGCAACTGAGCATGTCAGTCACCT---CTGTCCTAAT--------------GATAAAAGCAACTTCCTGCTGCCTC-GCCTTCCAGTTAG--TGA-TCTAGACCAGCAGCTCCCTTTAT--------CACCACACAT----TTGCATCAAGGAAGCCCTAAGTCAACAGTAAGGCCTCTGTTACTGTT------CTCTGTTCCAAGGGGTTTCGTTCTCATCTTTGTACTTACCGCAATAATGAGTCCACTGGGTCCATTTAGATTATCAACCCAACCCTGGA--AAGAAAGATCTCTGTTGGTTACACGTTGCAGAAAATTGTT a score=9767.000000 s hg15.chr22 14776545 111 + 49476972 gaggaggaggaagaggaggaagaggaggaggag---------gaggaggaagaggg-gaaggggaagaggaagaagatgaaga----aagaagaaggagaaggagga---------caagggggagAAACGACA s mm3.chr6 1414842 114 - 149950539 GAGTATGAGggaagaggaagaggagaagagggcaagataagaggagaagaagagg--gtaaggaaggaggagggggaggaggg---------ggaagaagaggagga---------gtgagaggaagaggagAA s rn2.chr4 654049 131 - 183307734 gaagaagaggagagtgtaagggaggaggagggc---gtaagggagaaggaagagggtgtaagggagaaggaagaggaggagggtgtgagggaggaggaagaggaggaaagtgtaagggaggaggaagaggagga a score=65055.000000 s hg15.chr22 14776656 763 + 49476972 TCAGAAAGTAATTGGGCTAGAAGAACTTTAATTTGGAAGCAAAACACAGAATCCAGGTGAGTGGG-CTTACTGGGAAAGGCTCATGCCACGTTGCTCCCACAATGGAGGGCCTTATGATGGCGATGGTTAGGTTTCTGCTCTCCTGCTGCACCACCATTTCTCCCAAGGCCTTGATGTAGGTGCAAGAATTGGGCGGATCTCTGATCAGCTTGGGTGTGATCTCGTCAATAACAGCGTCGTCTAACCACGTAAAAAGTAGTCAGAGTGAAAAGAATTCTAGCAGCATATGTTAGACAATAGACCAAAAGGAAAATGTGACACGCAAATAGTCAAACAAAACTTCCACCTTTTAGCCTT-GGTTCTGGAATTTAG-----TCACACAATACCAAGTTTGAGGGCATACCTGTTCAAAGCATGCATGAGCTCTTTGCTCTTCACTGCTAAGCCCAATCTCATCAGCCAAATCCTATGCCCTCCCATCTAGAGAGATAGGTAGGTAGAGAGACCAATAGAATCAATAGCAATACCACTTTATTATTACTACTAGTATAGGGCTATTAGTACTACTTTATTAGTATGACTTTAGCACTACTATTTATTTATCAATTACTTTACCAATACTACTACTTTATCTGTAGTAGTACTAAACTGGAGGTTATTACATACAACCTCTTTACTTCCTCTCCAAGAAGCTCCTAAGTACATTCATTGCACACATTTTTGAGTTCCAGTCAT---TCTCCCAATAGTGTGCTGGAAGCTGTGTTCA s mm3.chr6 1414956 587 - 149950539 TCAGA----AATTGGTTTTTAAGGCGCCTGGCTT-GAAGCAGAGCAGGGAA-------GTGCTGGTCTCACCGGGAAAGGCTCCTGCCAGGTTGCTCCCACTATGGATGGCCTGACAATGGCCACATTCAGGTTTCCGCTCTCTTGCTGCACTACTATCTCTCCCAAGGCTTTGGTGTAGGTGTAGGTATTGGGCCGGTCCCCAATCAGCTTAGGAGTGATCTCTTCAATGATAGAGTCATCTAACCACCTGA-----AGGCAGAG-AAAAAAAATTCTAGTAATATCCACTGTACAATAGGAGAAGGAGAAAAC---AAACACAGCCAGTCAAATGAAACTTCTGCCTTCTGGCTTGAAATTCTGAAAGGCAGGACCATCTCAGGGTCACAAGGACAAGTGCATG--TGTTCAAACCATTCCT-----------TCTCCAT-----------ATATCTTAGTTAAAAGCCTGCTTCCTCCCATCCGGA------------------------------------------CACTTGATTATTTCCATGGATATG-------------TAATTTGCT------------GCATCAC-----ATGTAACACTTA-------------------------------------------------------------TCTTTGCTTCTATCCTAAG--TCTCATTACTGTGTCCACTG-AGAGGTGTATGAGTGCCAAGCCC---ATATCCAG-AGCAAACTGGTA-CTGTGCCCC s rn2.chr4 654660 585 - 183307734 TCAGA----AGTTGGCTTTTAAGGCACCTGGCTC-AAAGCAAAGCAGGAAA------AGTGTCGG-CTCACCGGGAAAGGCTCCTGCCAGGTTGCTCCCACTATGGATGGCCTGACGATAGCCACATTCAAGTTTCCGCTCTCTTGCTGCACAACTACCTCTCCCAAGGCTTTGGTGTAGGTGTAGGTATTGGGCCGGTCCCCAATTAGCTTGGGAGTGATCTCTTCAATGATAGAGTCATCTAACCACCTGA-----AGGCAGAG-GGAAAAAATTC-AGTAAAGTCCATTGTACAGTAGGAGGAGAAAAAAAC---AAACACAGCCAGTCAAACAAAACTTCCACCTACTGGCTTG-AATTCTGGGAGGCAGAACCGTCTCAGGGTCACAAAAACAAGTGTGTG--TGCTCAAATCACTCCT-----------TCTCCAT-----------ATACCTTTGTAAAAAGCCTGCTTCCTCCCACCCAGA------------------------------------------AACTTGATTATTTCCATGTATATA-------------TAATTTGCT------------GCATCCC-----ATGTAACCCTTA-------------------------------------------------------------TCTTTACTTCTATAGTAAG--TCTCATCAGTGTGTCCACTG-GAAGGTGTATGAGTGCCAAGCCCATGATGTCCAA----GAGCTGCTA-CTGTGCCCC a score=2981.000000 s hg15.chr22 14777419 394 + 49476972 GGGAGTTTGAGGCTCTCATCCAAGGTGTTTCAGTGGCAGCCCTGTTCAGTGTTGTCCCATAGAAACCTGGTGCAGTGATCCTGAAGAGTTTAGCTTTACATTTAAAAAATTTCAT--TCAATGCAAATCAAACCAAAGTGACTACTTTTGGCAGAC-TGACAATCTCTTCTAGCAAATCTATGTAACGCATTTTGAAGGTCTGTTTAGAGTCTGTGCTAATAACTTGCTAATTATTTCCAGAGATTTCCAATGAATTCGAAGTCTGTCAAGTGGGGTGATTATAGTACTCTGAAATTGCTTCAAAATCATGAATATTGAATTCTCCTACTTATAATATGACATGTATCATGAATAACTGAGTTACCATAGCATCAGCCTAATCTTTCTTAAAAATAT s mm3.chr6 1415543 331 - 149950539 CAG---CTCAGGGCCGCCTCCTCCCTGCTCC--------TCTCATTCAGAATAGTCCAGTGAAGTCATCTTGTACCAGTTTT-AAACCTCTAGTTTTTAACTTTTAAAATTTCAGTATCTTTACAAA------CAAAGCATCTAC------AAGACTTAACAATACCC---------------TGACACCATCTGAAGATCTGTTTAGAATCTAAGCTAACAATCTGATGACTGTT---GAAGGCGTCCAATGATTTTGG----TGTTAACTGGAGTGAGCCCAGAGCTCTACAGAAGCACCAACAGCACAGCTACCGA------------ACACTGTGCCACTTACGGGTGATAGCT--ATTACCCTAGCATCTGCCTGA------ATAAAAATGT a score=1889.000000 s hg15.chr22 14777813 10 + 49476972 GTCAGAACTg s mm3.chr6 1415874 10 - 149950539 GCCAGAGCCA s rn2.chr4 655246 10 - 183307734 GCCAGAGCCA a score=15112.000000 s hg15.chr22 14778121 108 + 49476972 CCATTTGATAAACCCAAAGTCTATCTACACATCTCTAAGAGAGCAAAAAATTATTGTCAATTAAATATGTAACATTTATTCTAGCTGAGAGATCTATGTGCTTAAATT s mm3.chr6 1415884 99 - 149950539 --CTGTAATAATCCC-ATCTTTAT-GACATTCCTCTAAGAGAGC-----ATTATTGTCATTTAAATATGTAGTACTTCTTTTAGGTAGCAGGGCTATTTGGTTAAATT s rn2.chr4 655256 99 - 183307734 --TTGTGATAATCCC-ATGTTTAT-GACACTTCTCTAAGAGAGC-----ATTATTGTCACTTAAATACGTAGTGCTTCTTTTAGGTAGCAGGGCTACTTGGTTAAATT a score=70835.000000 s hg15.chr22 14778888 361 + 49476972 GAGACCAGCGGCGGCGGCCGC---------AGCGGTACTGGAGGCGCAGAGGGCGGTGCAGGCGGAGCC---TGGCGAGCACCTGAGCTAGCAGAGACCTGGCGGC---CTTTCGGGAGGCGGCGGCGGCGGCACCCCAGGCCCAGCCGGCACGGGAGGAGTTCCAGGGCGATGGGGCCTTGGTCCGGGCTGATGCTTTGACAGCTGAAAAGAGCGCGGAGCCAGCGCCTGGTCGGGAGGGAGGGGAGCGCGGCGAGGAGAGCGCCAGCTAGCGAGAGAGCGAGCGAGCGCCTGGGAGGGGGCCGGGAGCCAGGGGCAGCTCGGGAGAGCCGGA--GCTGTGGCGGCTGTGGCGA--GGCTTGGAGCCCTCTTCCCTGCA s mm3.chr4 104896134 359 + 152921959 TAGACCAgcggcggcggcggcggcagcggcagcggTGCTGAAGGCgcagagggcggcgcaggcggagccgggcggcgggcgcgcgggccgcgagcaagcgagctgcaggcttcgggcgggcggcggc----gcagctcaggccgagccggcgcgggaggagttccagggcgatggggccgcggccggggctgacgctttgacagctggaaagagcgcggagCCTGCGCCT----GGGAGGGA-GGGAGCGCGGCGAGCGGAGT--------GCGAGCGAGCGGGCGAGCGCC-GGGAGGGGGCCGGGAGC--AGGGCAGCTCGGGAGA-CCGGACGGTAgcggcggcggcggcggcgggctcggcgcccTCTTCTCTGCA s rn2.chr5 138091293 353 + 191625135 TAGACCAGCGGCGGCGGCGGC---AGAGGCAGCGGTGCTGAAGGCgcagagggcggcgcaggcggagccgggtggcgggcgcgcgggccgcgagcaagcgagctgcaggcttcgggcgggcggcggc----gcagctcaggccgagccggcgcgggaggagttccagggcgatggggccgcggccggggctgacgctttgacagctggaaagagcgcggagCCAGCgccg----gggaggga-gggagcgcggcgagcggagt--------gcgagcgagcgggcgagcgcc-gggagggggccgggagc--agggcagctcgggaga-ccggacggtagcggcggcggcggcgg---gCTCGGCGCCCTCTTCTCTGCA a score=36789.000000 s hg15.chr22 14779249 1187 + 49476972 AACCATGTTTGCCAAAGACAAAGGCT--CGTTGGTGCCCTCGG----ACGGGCAGGCTGGGGAAAAGTTAGCTTTATACGTCTACGAATATTTACTGCAGGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCTCTGGGAAAAAAAAAAAAAAAAAACATCACGTTGGGAGAACAGCCTCGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTAAAAGGAGAGACACTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCCTGATTCTAGTGCAGCAGCTGCCCGGAGCCCCGTGCTTGGCAACATTCCCCCCAACGATGGGATGCCGGGAGGCCGAGTCTCGCCAGGTTTCTTTCAGTGTCCTCCGGGGTCACTGCCCTCACTGCATGCACAGCCTCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGCCTTTTATGTCACCGCAATACGCAGGCGGCCCCAGGCCCCCCGATCAGAATGGGAAACCAGCCTCCTCCGGAGGAGTTCCTGGGAAACAGCCATTGCTGCCCAATTCCATGGATCCCACACGACAACAAGGCCACCCCCACATAGAAGGATCAATGCAGAGAATGAACCCTCCCTGAGGCATGGTGCCCATGAGTCCCAGCCCACAGAATTACGGCAGTGGCATGAGACCACCACCCAATTCCCT---TGGCCCTGCCATGCCCGGGATTAACATGGGCCCGGGAGCCGGCAGACCCTAGCCCAATTCTAACAGTGCTAACTCAATTCCATACTCCTCCTCATCACCTGGTACCTATGTGGGACCCCCTGGTGGTGGTGGCCCTCCAGGAACACCCACTATGCCCAGTCCCTCAGATTCAACAAATTCCAGCGACAACATCTACACATTGATTAATCTGGTGCCACCTGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCCAGCTTGGACGGTCCGATGGGCAGCATGGGTGGCATGGAGCCACACCACATGAACGGATTGTTAGGGTCAGGCAACATAAATGAC-TTCCAAAAAATTCTCCTAACAACGTGAATAGTATTAGCAATCTTCCAGGCACCCCTCGAGATGACGGCGAGCT--AGGAGGAAACTTCCTCCACTCCTTTCAGAATGACAATTACTCTCCAAGCATGACGATGAGTGTGTGATCC s mm3.chr4 52828237 1056 + 152921959 AAGCATGTACAGCAAAGGCAGCAGTTAACAGCAGTGCGCCCCGTGCAGCAGCCAGGCCAGGGGGA-GTCAGCACTG--CGTGTATGGATGTCTGCTTCATGTAGGCACTCAGAAATAGGCTCAGACATTTTTATCAGAGAT-----------AAGATGGGAAAAAAACATCACATTGGGGGGGAGGGCAGGATTCTTACATTCTTGGTGGTGTGTGTTTTGGGATTTCTACTGTGCAGCTCC-----AGAGAGAC----GGGAACACTCAA----AGCAAAAGCCTTCCATGATTATAGTGCTGCAGCAGCTCCCAGCCCCATGCTAGGAAGCATGCCCCCAGGAGATGGCATGCCAATAGGTCCCATGCCACCAGGGTTCTTTTAG---------------------------------------------------------------------------------CCTTTTATGTCATCTCAGTACCTTGGAGGCCCAAGGCCCCC-ATTGAGGATACCTAATCAGGCACTT--GGAGGTATCCCAGGAAGTCAGCCATTACACCCCAGTGGAATGGATCCATCATGACAACAAGGTCATCCAAATATGGGTGGACCAATGCAGAGAATGACTCCCCCAAGAGGTACGGTGCCCTTAGG------ACCACAGAACTATGGAGGTGCAATGAGACCCCCACTGAATGCTTTAGGTGGCTCTGGAATGCCTGGAATGAACATGGGTCCAGGTGGTGGTAGACCTTGGCCAAACCCAACAAATGCCAATTCAATACCCTACT--------------GGGAATTATGTAGGTCCTTCAGGAGGTGGAGGACCACCAGGAACACCCATCATGCCTAGTCCAGCATATTCAACTAATTCTGAAGATAACATGTATACTTTAATGAATGCAGTACCTCCTGGGCCTAACAGAACTAATTTTCCAGTGGGCCCTGGATCAGATGGT---------GGATTAGGAGGAATGGAGTCCCATCACATGAACGGCTCTTCAGGCTCAGGAGATATGGACAGTATTTCCAAGAATTCTCCCAATAATCTG---AGCCTGAGTAACCAGCCGGGCACTCCAAGGGATGATGATGAAATGGGGGGGGAAATGTCTTAAATCCTTTTCAGAGTGACAGTTACTCCCCCAGCATGACCATGAGTGTGTGATCC a score=38576.000000 s hg15.chr22 14780436 228 + 49476972 CCCCTTCTCCAAGATGCTGAGAGAGCTGGCATTGCAGGCAGGAAGATGCCAGAAATTATGCAAGAAG---TGAGGTGTCATTACCCAGGAGCTGGTGGAGAGGGCATCTCCTGCTCCCCTCAACCCCCTCCCACCCCATCCACGCCCACCTTTTCCAATTTTAGTTTCATGCAGTAAAAAGGCCGAACTTTTTATTCCATAaaacaaaagaaagaaagaaacaaagaaaca s mm3.chr4 105032697 207 + 152921959 -----CCTCCGAGACGCT--GGGAGCCAGCATTGCAGGCA-GAAGATGCCAAGAATTATGCAAGAAG---TGAGGTGTCCATA-CCAGGAGCTG--GGGGAGGGCATCTCCTGCTCCC-TCCA--CCCTCCCATTCACTCC---CCCACCTTCCCCAATTTTAGTTTCATGCAATAAAAAGGCCAAACTTTT-ATTCCGTAAAAC---ATGAAGGACAAAACTCAAAAATA s rn2.chr5 138229570 215 + 191625135 ---CTTCTCCACAACGCT--GAGAGCCGGCATTGCAGGCA-GAAGATGCCAGAAATTATGCAAGAAGAAGTGAGGTGTCGATA-CCAGGAGCTG--GGGGAGGGCGTCTCCTGCTCCCCTCCA-TCCCTCCCATTCTCTCC---CCCACCTTTCCCAATTTTAGTTTCATGCAATAAAAAGGCCAAACTTTTTATTCCGTCAAAC---ATGAAGGACAAAACTCAGAAATA a score=34447.000000 s hg15.chr22 14781099 358 + 49476972 GTACATTTATTTCTATTTTATACAACAGAACATAACAATACTACTTTGATTGTAGAAAATCTTCAC----TGTTATCACCTTGCTGACATGACACATTTTTGAACAACTAAGATGTGCAGAAGGTTAAGACTTATTCAGAATCACAACTCTCAGTATTAATGCCTCAT-TTCATCCTGGGGTAGAACATGGGCATTGACTATAATGTTTCCATTTTTCTTGCTTTGCTTCTATGAGTGCTGAGTGTGTTCTGGATACTCAAATGACTTTTCATTTAAATTGAATGGAGAAAGATTGAGGGGTT--CTAGAATTAAAAACAACTTAAACTACATAGAAATATCAAGGATATTTTAATTATATG---------------GTC s mm3.chr6 1416233 364 - 149950539 GCACATTCATTCTGCTTTTACAGGAGAAAGTATAACTGTAGTATTTTAATTGTAGGAAACGTTAGCAGTTAGTTATCCTTCAACTCCTACGACAAACTGCTAAACA------CTACATCTGATGGTACAATCTATTCAGAGTCATAACTATGAATTTTAAGCACTCTTCCTGACAGT-GGGCAGAATACAAAGATTGGCCATAATGGTTTCATATTCTTTCCTTTGATTCTCTTAGTTCTAAATATAACATGGTCACACAAATGTCTTAGGGTT------GAATGTGGAAAAGTAGAGAAAATCCCTAGAATT-GAGACAACTCCAAACACAGAGAAATA--CAAGATAATTAGATTTTGTATCAAATATTAAATTTGTA s rn2.chr4 655600 348 - 183307734 GTGTA-TCGTTCTGGTTTTATAGGAAAAAGTATAACTGTACTATTTTGATTGTAGGAAGCATTAGC----AGTTATCCCTCTACTCCTATGACACATTGATAAACT------CTGGGTCGGATGGTAAGATCTATTC--CGTCATGACTATGAACTTTAATCACTCTTACTGACAGTGGGGCAGAATAGAAAGACTAGCCATAATAATTTCATTTTCCTTCCTTTGCTTCTATTAGTTCTGAATATAACATGGT--CACAAATGCCTTAGGGTT-------------GAAAAGTAGAGAAAATCCCTAGAATT-GAAACAACTCTAAACACAGAGAAACA--GAAGAT-ACTAAATTTTATATCAAATATTAAATTTGTA a score=24393.000000 s hg15.chr22 14781547 303 + 49476972 GATTGACTGACCTGAGATCATTTTCCCTCAACCGCAAAAATATACAGTTTATGAAAAC-----CAGGTCTTGAGAAAATAGAGCTTAATATCAATAAGGCTGTAAAGAAAA--AATTCCTAGAAAACATCAGATCCGAACAATGTGCTGGGATTGTATGTCACATGGCTAGTACCAGTTGCTGTCGTTAATGTTGGAGTACATGGAAAGCATAATACTTGGGGGGATGGGGCCTTATAAAGTTTAGTAGCTTTGCTTGTCTTGGAAAATGTTGTTTTTGGTTGTTGTTGTTTTGGTTTGGTTTGGTTTAt s mm3.chr6 1417712 234 - 149950539 AATTAACTAACCTGAGACCATTTTTCTACACCA--------ATACAGACTACAAAAAAACCCACA----------------AGTTTAATTTTAACAAGGCTGCAAAGACAAACAATTTCGAGAGAAAATCAGAACCTAGCAGC-CACAGGGAGTCGGTGTCACACAG-----AACAACTGCTCTC-----------------TGCAAAGGGTCATAGCTG-------AAGGCTCTACAAAGTGGGGAAAGTTAGCTTGTCTTACAGAGTACTGGCTCCG----------------------TAGATGTGT s rn2.chr4 656594 227 - 183307734 AATTAACTAACCTGAGACCAGTTTCCTACACCA--------ACACAGACCATAAAAAA-----CA----------------AGTTTAATC--AACAAGGCTGCGAGGAAAAACAATCTCAAGAGAAAATCAGAACCCAGCAAC-CACAGGGAGTCAGTGTCACACAG-----AACAGTTGCTCTC-----------------TGCAAAGGGTCATAGCTG-------GGGGCTCTACAAAGTGAGGAAAGTTAGCTTGTCTTACAGAGTATTGGCTCCA----------------------TAGATGTCT a score=11412.000000 s hg15.chr22 14782148 247 + 49476972 AAAATGTTGGTAACACACATGCAAGAAATTTTAATATTCTATAGATGGCTTGCCTCTGCTGTTGTTATTTACACCTGTATTCCACTGTTTAATCTTCTCATTCCAATTTTACTTGTGAAA-ATAGCAATAATTATATTCATTCTAAATTCTCAGGCTATTATGAGGGTAAACAAAAATTTTCACAACTGCATTTAAGATCTTTGATAAAACAAAATGAGCCAA--------AAATCTAAGGCATTCCTATTTTTAA s mm3.chr6 1417946 212 - 149950539 AAA--------GACATGAGTGTGAGTGCCTACTGTACTGTTCAGAAGGCTTACCCCTACTGC--TTAGT----TCTGTGT---ACTCATTCATTCTCCC--TTCATTTTTGCTCATGAAAGATGGC--TGGCTATATCTGTTCCTTGTCCT-GGGTTATCACGAGGACAAGCATGTATAGATGCAGCTAT----------------------AAATGAACCAGTGCAACATATCTCTCTTGCTCTTCTATCCCTAA s rn2.chr4 656821 213 - 183307734 AAG--------GATGTG-TTATGAGTACCTAGTGCACTGTGCAGAAGGCTCGCCCCTGCTAC--TCAGTTCTGTCTGTGT---ATCCATTCACGTTCCC--TTCGTGTTTATTCATGAAAGATGGC--TGATTCTATCTGCTGTAAGGCCG-GGGTTATCATGAGGACAAGTGTGCATCTATGCAACTGT----------------------AAATGAACCAATGTAAC--ATCTCTCCTGCTGCCCTACCCACGA a score=30824.000000 s hg15.chr22 14782734 419 + 49476972 TGAAGGAATGAATGAATAAAACAAATAAAA--ATAAATTATCGTTTATAATACAGCCAAAGAGACCATCTGCTAGCTCATTCGGCCACTTCCTAGGATCAGAAAGGAGATTAGTGTAA-ACATGCATAT---GCACTGATTGGG-----CAAAGCCCTTCTCAGGACTTTCACTCAATTCAGGGTTGCTGCTGTTGTTTGTTCTCAATATGTTTTT-AAACAGTAAATAAGTTAGCAT----GGATAAAAACCACTATATTAACCAAAATACATGTCTGAAATTAATCTAAATGTTCTTCAGTATACTCAAGAAGATGCTTTGA-----------------------------------------CCCATGGGTCT-CAAATACTAAACTC-----GAATTGCTTCAGAAGAAGCATAAAGTCATTAAAAATTTCAGAAAGCAATATGTGTATGTCT-ATGT-GTGTACATG-CATAGACACATA s mm3.chr6 1418235 442 - 149950539 ------TTTTAATAAAGCAAGCACAGAGGATTTTTAAGTAACCTTTCTTCT--GTCCCACT-GACCACTTTCTGTCCCATCTTGTCCCCCTCTGGATTTGGA-GGGAGGGCAGTGTGACAAATGCCCATCCACCACTGC----------CTGAGGTCCTCT-----CCTGTATTCAGTTGCAGCTCTCTGCTAAT-CTCTTTTCCATTAGTTCTTCAAAACCATCAACTAATTAGCAT---GCAAAAAAAGATACTGCATGAATTAACATACATTTCTGGAATTAA-CAGAATGTCCCACACTATGTCCAAGGACATGGTTTGAACCCACAGAAT----GTCCCCAAATTTGAATTCACCTCATTCCCATGAGTCCCCAAGTTTAAAACTC----TAAGTTGCTTCAAAAGAAGCATGAAGCCATTAAAGATCGT----AGTAGTAGGTGTAC-TCTGATGCAGTTAACACAGCATAGGCTTGCC s rn2.chr4 657114 454 - 183307734 ------TTCTAATACAGCAAGCACACAGAA-TTTAAAGTAACCTTTCTTCTACATCCCAAT-GACCGTTTCCTGTCCCATCCTGTCCCTCTCTGGATCCAGAGGGGAGGGCAGTGTGACAAATACCCATCCACCACTGCCTGAGGTCCTCTGAGGTCCTCT-----CCTGTGTTCAGTTACAGCTCTCTGCTATT-CCTGTTCCCATTAGTTCTTCAAAACC----ACCAGTTAGCACAGGAGAAAAAAAGGTA-TGCACGAATCAGCCTACCTTTCTGTAATTAA-CAGAATGTCCCACACTTTGTCCAA------GTTTTGAACCCACAGCTCTCCAGCTCCCCAATTCAACTTCACTTCATTCCCATGAGTCTCCAAGTTTGAAGCTCTACTTACGTTGCTTCAGAAGAAGCACAAAGCTGTTAGAGATCGT----AACGGCAGGTGTATGTCCAATGCAGTTAACACA-CACAGGCATGTC a score=12625.000000 s hg15.chr22 14783190 242 + 49476972 CAA----ACTTATTGAATCAACATGA--------TGATATCATT-----AATAGTTACATTATTTATGTATTTACAGAATGAAATGCCAAGAGGCATATGTATTTTCCCTCCCTCACCTTCCAATTT-TCTTATGCAACAAGTTGGCAAGCCTAGTGGT-TTATGAGGAAATCTGTTAGAGAGTAAGTAGT-GGACACACTGTCTTATGATAACATTTGCTCTTTCTTTCTCCAGTCTAAATTATATAGTTC-ACTTGATTGT s mm3.chr6 1418901 206 - 149950539 cac----gctcttctaacttacaccatccttcTTTAATATTATGGAACAAATAGTTTCATTGTTTATACAT------AGTTATGTGAAATGGGGAATGTGTTT--------------CTCCTAATTT----------A------GACAGATCTACAAGTATTTGGAGTTAAGCTCTCTGGGAGAGAATGGTAGGAAGTCC------GTGATGACTTT---TCTCATTTTCTCTAGCC-AGGCTGTA-------TCTTCATGCT s rn2.chr4 657554 223 - 183307734 CACACAGGCATGTCTAACTTATGCTATCCTT---TAATATTATGGAACAAATAGCTTCATTGTATATAGAT------AGTTGTGTGAAATGGGGGATATGTTT--------------CTCCTAATTTATCTTCTGAAA------GACAGCTCTACAAGTATTTGGAGGAAAGCTCTCTGGGAGAGAATGGT-GGAAGTCC------ATGATGACCTT---TCTCATCTTCTCTAGTC-AGGCTGTATGTTGTGTCTTCATGCT a score=41972.000000 s hg15.chr22 14783432 457 + 49476972 TGTAGTTACGAAGTTGtatt-tgttcacgtgtctgtctccccattggacagtgagtccaggagagcagggattatgat-ttttatctctgtatcTAATCACTTTTCTGCCCCCAGGAGCCAGCTACCTTATTCAGTAAATGGATGCTCTTCCACATGGTAATCTT--GATTGGTCAATTTCTGTACTATATAAGGTTTTGGGAAGCAGAGATGG----ACAATGATAAGAGAGAGTAGACGAA--AGGAAGAT---------GAGGTTATAGGGAGA---ATGTGGGAAAG---GAAAGAAGGGGATATCTTCATAGAGCAGGAAGCAAAATTGGAAGTCAAAGTGTCCAGTGGCAGTGG-----TGAAAAG-----TGTTGA------CCAACCTCGATTTGGTGAAGGTGGCGTCACA-TCAATTTAAACTTTTCATGGGGAAGCAGGGTATTTCTCAACCTAATGCTTATGGAGAATTGGCCTCTGTATTTCCCTC s mm3.chr6 1419107 454 - 149950539 TATA----------TGTTTGATATGCGTGTAATT---------TTAGACAGT-AGCCCA-GAGAGCAGAGATTCCATTGCTTTATTCATGTGTCTCATCATTTTTCTGTCCCTGGGATCTTCCTTCCTT----AGTAGAGGG------TGCCACATGTGACCCTCAGGAGGGGTCAGTTTCTATACCATGTAAGCTTTAGGGAAGCAGGGATAG----------ATACAAGAGAACAGGTGGATCAGAAGAAACTACCTTT-GGGGTTGCGGGGAAATATATCTAAGAAGGAATGGTGGAATAGGATGCTTTTACGGAGAAGGAAGCAACACTGTGAAATATAGTACACAGTGATGTTGGATTCCTAAGAACAACA-TGCAGAAGGCAGCTGTTCTCAGTCTGGGGGCATTAGTTTCACAGGTTATTTAAATGATTTTCAGGGGGGAAGGAC-TTTCTAAGCTTAATGCTTGTTGTCAGTTTG-TTCTCTTTCTCCCCC s rn2.chr4 658134 460 - 183307734 tgta----------tgtgtg-tgtgtgtgCGATT---------CTAGACAGT-AGCCCA-GAGAGCAGGGACTCCACCGCCTTATTCATGTGTCTCAGCACCTTTCTGTCCCTGGGATCCTGCTTCCTT----AGTAGGAAG------TGCCACATGGGATCCTCAGGAGGGGTCGGTTTCTATACCATGTAAGCTTTAGGGAAGCAGGGATGGGGGGATGGACATACAGGAGAACAGGAGGATCAGAAGGATCCACCTTTGGGGGTCATGGGGAGATATATCAAAGGAAGAATGGTAGAATAGGATGCTCTTACAGAGAAGGAATCAACATCGTGAAACATGGACCAGAGTAGTGGTGGATTCCTGGGAAGAAGACCGCAGAAGACAGTCATCCTCAGTCT-GGGGCATTAGTTTCACACTGAATTTAAATGTTTTCCAGGGAGGAA-----TTTCTAAACTTAATGCTTGTTGTCAGTTCA-TTCTCTTTCTCCCCC a score=7689.000000 s hg15.chr22 14787885 79 + 49476972 CTGTTCCCTAGCTATTTCTCTGTTTCACT--GAAAGAAAA-ACAAACTCCCAGGGGAAACAG--AAACCTAAAAACCTTTGAAA s mm3.chr14 13498243 79 - 115844145 CTGTTCTCTATCTCTTTCTATCTTTCTCT--AAAAATAAA-ATGGATTTCAGAACAAAACAA--CAACCAAAAAACCTATAAGA s rn2.chr15 13629463 83 - 99209255 GTGTTCCTTCTCTCTTTCAATCTTTCTCTCAAAAAGTAAGTGTGGGTTTCAAAACAAAACAAAACAACcaaaaaac-tataaaa a score=12558.000000 s hg15.chr22 14788008 95 + 49476972 TCAAAAGTATTTTCTTAAAGCAAAAAACTA---AACCTGCATTTAGGTAAATTAATGTTTATTCATAAGGATTTTTAATGTTATTTGTTATTCTAAAA s mm3.chr7 32593163 92 - 134401573 TTAAAGGATTCATCTTGAAGGAATGATTTAGATAATCT-CCTGTAGGAAAAATAAGTGTTA-----AAGCATTTTAAATATTATTTGTTATTCAGAAA s rn2.chr1 113935493 92 - 276301343 TTAAAGGATTCGTCTTGAAGGAATGATTTAGATAATCT-CCTGTAGGAAAAATAAGTGTTA-----AAGCATTTTGAATATTATTTGTTATTTAGAAA a score=3200.000000 s hg15.chr22 14788153 18 + 49476972 GTGTATGTGCGGGGGAGA s mm3.chr8 119563262 17 + 128923138 GTGTCTGTGC-GGCGAGA s rn2.chr19 49769163 17 + 58130210 GTGTCTGTGC-GGCGAGA a score=10439.000000 s hg15.chr22 14788171 219 + 49476972 AGATGGCGGCGGCGGGGGAGGCAGCGTGAGCAGCCGGAGGAGCGCCGAGTCCCATTGAAACCGGCAGCCATGGCCCTCCACAGCCCGCAGTATATTTTTGGAGATTTTAGCCCTGATGAATTCAA---------------------------TCAGTTCTTTGTGACTCCTCGATCTTCAGTTGAGCT---TCCTCCATGCAGTGGAACAGTTCTGTGTGGCACACAAGCTGGGGATAAACTACCTGAT s mm3.chr1 46224800 244 + 195869683 AGATGGAGACGATGAGAGACGCAGCGTGAGAAGCCAGAGCAGCTCCAAACCTCATTGAGACCGGCCGCCAAAGCCCTCCACA-CCCACTGTATATTTTTGGCTATTTCAGCCCTGATGAATTCAGAGTTTTTGTTGTTGTTTTGGTTTGGTTTGGTTTTTTTGTGA-TCCCTGCTCTTCAGGTGAGCTCCCCCCTCCATACAGTGGGAC---TCTGTATAGCATACAGGCTGAAGATGAACTGCCAGAT a score=196334.000000 s hg15.chr22 14788390 1027 + 49476972 GGACAAGAATATCGGAGAATTGAGTTTGGTGTCAATGAAGTCATTGAACCCAGTGACACTTTGCTGAGAACCCCCAGCTACAGTATTTCAAGCACACTGAACCCTCAGGCCCCCGAATTTATTCTCGGTTGTACAGCTTCCAAAACAACCCCTGATGGTATCACTAAAGAAGCAAGCTATGGCTCCATCGACCAGTACCCAGGCTGTGCCCTCGCTTTGGATGGAAGTTCTAGTGTGGAGGCGGAAGTTTTGGAAAATGATGGTGTCTCAGGTGGTCTTGGACAAAGGGAGCGTAAAAAGAAGAAAAAGCAGCCACCTGGATATTACAGCTGTTTGAAAGATGGTGGCGATGATAGTATTTCCACAGAAGCCCTGGTCAATGGCCATGCCAACTCAGCAGTCCCGAACAGTGTCAGTGCAGAGGATGCAGAATTTATGGGTGACATGCCCCCGTCAGTTACGCCCAGGACTTTTGACAGCCCCCAGAACTCCACGGACTCTGTCAGTGACATTGTGCCTGACAGTCCTTTCCCCGGAGCACTCGGCAGTGACACCGGGACTGCAGGGCAGCAGGAGGGGGGTCCCGGGGTTGATTTTGGTCAGTCCTGCTTCCCTGCAGGGGCTGGCAGAGACACCCTGTCAAGGACAGCTGGGGCTCAGCCCTGCGTTGGTACCGATACTACTGAAAACCTTGGAGTTGCTAATGGACAAATACTCGAATCCTCGGGTGAGGGCA---CAGCTACCAACGGGGTGGAGTTGCACACCATGGAAAGCATAGACTTGGACCCAGCCAAACCCGAGAGTCCATCACCTCCTGCTGACGGCACGGGCTCTGCATCAGGCACCCTTCCTGTCAGCCAGCCC---AGGTCCTGGACCAGTCTCTTTCACGATTCTAAGCCCTCTTCCTCCTGGCCGGTGGCCTATGTGGAAGCTAAGTATTCCCCTCCCGCTATATCTCCCCTGGTTTCTGAAAAGCAGGTTGAAGTCAAAGAAGGGCTTGTTCCAGTTTCAGGGGATCCTGTAGCCA s mm3.chr8 119593617 1015 + 128923138 GGACAGGAGCACCAGAGGATCGAGTTTGGTGTAGATGAAGTCATCGAACCTAGTGAGGGGCTGCCGCCAACTCCTAGCTACAGTATTTCAAGCACCTTGAACCCCCAGGCACCCGAATTTATCCTTGGTTGTACGACTTCTAAAAAGATCCCTGAAGCCGTTGAAAAAGATGAGACCTACAGCTCCATTGACCAGTACCCCGCCTCGGCCTTGGCTCTGGAAAGCAACTCTAACGCAGAGGCTGAGACCCTGGAGAACGACAGTGGTGCCGGCGGCCTTGGTCAGAGGGAACGGAAAAAGAAGAAGAAGCGGCCCCCTGGGTACTACAGTTATTTGAAAGATGGCGGTGAGGACAGTGCTTCCCCAGCCACCCTGGTCAACGGCCATGCCACCTCAGTGGGCACGAGCGGCGAGGCTGTGGAGGACGCCGAGTTCA---TGGACGTGCTTCCTCCAGTCATGCCCAGGACTTGTGACAGCCCTCAGAATCCTGTGGACTTCATCAGTGGCCCTGTCCCTGACAGTCCGTTCCCCAGGACACTAGGAGGCGATGCCAGGACTGCAGGGCTGTGTGAGGGCTGCCATGAAGCTGACTTTGAGCAGCCCTGCCTCCCTGC------------AGACAGCCTGCTAAGGACAGCTGGGACGCAGCCCTACGTTGGCACCGATACTACTGAGAACTTCGCAGTTGCTAATGGGAAAATACTTGAATCCCCGGGCGAGGACA---CTGCTGCCAACGGGGCAGAACTGCACACCGACGAGGGTGCAGACCTGGACCCTGCGAAGCCGGAGAGCCAGTCACCTCCTGCCGAAAGTGCGCTCTCTGCCTCTGGCGCCATCCCCATTAGCCAGCCTGCAAAGTCCTGGGCTAGTCTCTTTCATGATTCTAAGCCCTCTGCCTCCTCACCCATGGCGTATGTGGAAACTAAGTGTTCCCCCCCTGTCCCATCCCCCCTGGCCTCTGAAAAACAGATGGAAGTCAAAGAAGGGCTTGTTCCAGTGTCAGAGGATCCTGTAGCCA s rn2.chr19 49793020 1021 + 58130210 GGACAAGAACATCAGAGGATTGAGTTTGGTGTAGACGAAGTCATCGAACCCAGTGATGGTCTGCAGAGAGCCCCTAGCTACAGTATTTCAAGCACCTTGAACCCTCAGGCACCTGAATTTATCCTTGGTTGTCCAACTTCCAAGAAGACCCCTGATGACATAGAAAAAGACGAGACCTACAGCTCCATTGATCAGTACCCGGCCTCAGCCTTGGCTCTGGAAAGCAGCTCTAACGCAGAGGCCGAGACCTTGGAGAATGACAGTGGCGCTGGTGGTCTTGGTCAGAGGGAGCGGAAGAAGAAGAAGAAGCGGCCCCCTGGGTACTACAGTTATCTGAAAGATGGTAGTGAAGAGGGTGCTTCCCCGGCCGCCCTTGTCAACGGCCATGCCACGTCAGTGGGCACGAACAGCGAGGGTGTGGAGGATCCTGAGTTCATGGTGGACATGCTTCCTTCAGTCATGCCCAGGACTTGTGACAGCCCTCAGAACCCCATGGACTTAATCAGTGACCCTGTCCCTGATAGTCCTTTCCCCAGGACACTAGGTGGTGATGCCAGGACTGCAGGACTGCCTGAGGGCTGCCGTGAAACTGACTTTGAGCAGCCCTGCCTCCCTAC------------AGACAACCTGCTAAGGACAGCTGTGACGCAGCCCAACGCTGGCGCCGACACTACTGAGAACCTCGCAGTTGCTAATGGAAAAATACTTGAATCCTTGGGCGAGGGCACTGCTGCTGCCAATGGGGTAGAGCTGCACACTGATGAGAGTGCAGACTTGGACCCTGCGAAGCCTGAGAGCCAGTCACCTCCTGCCGAAAGTGCGCTCTCTGTCTCTGGCGCCATTTCCATTAGCCAACCTGCAAAGTCCTGGGCTAGCCTCTTTCATGATTCTAAGCCTTCTTCCTCCTCACCCGTGGCGTATGTGGAAACTAAGTGTTCCCCCCCTGTCCCGTCCCCCCTGGCCTCTGAAAAACAGATGGAAGTCAAAGAAGGGCTTGTTCCCGTGTCAGAGGACCCCGTAGCCA a score=10548.000000 s hg15.chr22 14789417 96 + 49476972 GGCATTG----------GTTGCTTTCCCGACAATGTACCACCTGATGAAGTTCATTCCTCTGTATTCCAAAGTGCAAAGGCCCTGTACGTCAACACCCAAGGTAGA s mm3.chr13 8649127 81 - 116242670 GACATTGGTGGCATCCAGTCGCTTGCCCTCGGATGTATCACCTAATGAAGTTCATTCCTCTGAACTCAAAGGTGCAAATGC------------------------- s rn2.chr2 207684592 81 - 246339213 GACACTGGTGGCATCTAGTCACTTGCCCTCAGATGTATCACCTAATGAAGCTCATTTGTTTGTACTTAAAAGTGCAAATGC------------------------- a score=74783.000000 s hg15.chr22 14789513 1847 + 49476972 CAGCTTTGTTTGGCTAATGAATGAATTTACTAATATGCCAGTACCTCCAAAACCCGGACAAGCTCTTGGAGATAAAATCGTGAGGGATATTCGCCCTGGAGCTGCCTTTGAGCCCACGTATATTTAGACTCCTGACAGTTAACAAGTCAAGCCTGTCTGAAAAGGATCGACAAGAAGATGCTGAGGAATACTTAGGCTTCATTCTAAATGGACTTCATGAGGAAATGTTGAACCTAAAGAAGCTTCTCTCACCAAATAATGAAAAACGTGCGATTTCCAATGGCCCCAAAAACCAGTCAATGAAGAAGAGCAAGAAAAACAAGGTGAAGGAAGCGAGGATGAATGGGAACAAGTGGGCCCCCGGAACAAGACTTCCATCACCCGCCAGGCGG---ATTTTGTTCAGACTC--CAATCACCA-CATTTTTGGTGGCCACATCAGGTCTGTGGTTTACCAGCAGAGTGCAAAAGAATCTGCCACTTTGCAGCCATTTTTCACGTTGCAGTTGGATATCCAGTCTGACAAAATACGCACAGTCCAGGATGCACTGGAGAGCTTGGTGGCAAGAGAATCTGTCCAAGGTTATACCACAAAAACCGAACAAGAAGTTGAGAAAAGTCGAAGAGTGACTCTGGAAAAACTCCCTCCTGT----CCTCGTGCTGCACCTGAAACGATTCGTTTATGAGAAAACTGGT-GGTGCCAGAAGCT---------TATTGAATATCCTGTGGACTTGGAAATTAGTAAAGAACTGCTTTCTCCAGGGGTTAAAAATAAGAATTTTAAATGCCACAGAACCTATCGGCTCTTTGCAGTGGTCTACCATCACGGCAACAGTGCGACGGGTGGCCATTACACTAGAGACGTCTTCCAGATCGGTCTGAATGGCTGGCTGCGCATCGATGACCAGACAGTCAAGGTGATCAACCAGTACCAGGTGGTGAAACCAACTGCTGAA--------CGCACAGCCCATCTCCTGTATTACTGCCGAGTGGACCTGCTGTAAAC---CCTGTGTGCGCTGTGTGTGAGCCCAGTGTCCGCTTTGTAGGAC-ACCACCTCACACTCACTTTCCGCCTCTCTTTATTGGCTCTTTAGAGAGAAACTCTTTCTCCCTTTGCAAAAATGGGCTAGAATGAAAAGGAGATGCCTTGGGGTTCGTGCACAACATAGCTTCTGTTGACTCTAACTTTGAAATCAAAATCATTTGGTTGAAACAGACTGTCGCTTGATTTTAAAAAACACACAAAAACCCATATTTCTGAAATAATGCTGATTCCTGAGATAAGAAAGTGGATT----TGATCCCCAGTCTCATTGCTTAGTAGAATAAATCCTGCACCAGCAACACTTGTAAATTTGTGAAAATGAATTTTATC-TTCCTTAAAAAAGAAATGTTTTAATCCATCACATTTTTCTTCCCTACCCTTTAGTTTTTGATAAATGATAAAAATGAGCCAGTTATCAAAGAAGAACTAGTTCTTACTTCAAAAGAAAAATAAACATAAAAAATAAGTTGCTGGTTCCTAACAGGAAAAAAA--TTAGTAATTGTGCTGAGGGAAACTGCTTACATAGACATTGCAGATCAAATATTTGGAGTTAAAATGTTAGTCTACATAGATGGATGATTGTAACTTTACTGCCATTAAAAAGATTTCAGATTGCATTCATGCTTCTGTGTACACATAATGAAAAATGGAC-AAATAATGAA--GATCTCTCCTTCAGTCTGCTCTGTTTAATTCTGCTGTCTGCTCTTCTCTAATGCTGCATCCCTAATTGTACACAGTTTAGTGATATCTAGGAGTATAAAGTTGTCACCCATCGATAAAAATCACAAAGTTGGTTTAAAAAAAAAGAAATAGTCATA s mm3.chr1 46225039 1720 + 195869683 CAGATGCGTTCGGCTCATGAATAAGTTTATTAATATGCCCCTACCGCCCGAGCCCCGCCAAGCTGTCGGGGATAAAAT--------AACTCCACCCAGGAGCTGCCTTTGAACCCACATACATTTA-----CAGACAGTCATCAAGTCGAGCCTACCTGAAAAGGGCCGACCGGAGGACGCCAAGGAGTACCTAGGTTTCATCCTCAGTGGACTCCATGAGGAGATGCTGAGCCCGACTAAACTCCTCTCACCCACGCATGAGTAGCACTCTGTTTCCAATTGGCCTGGGAGCCACTTGAT--AGAGGAGCTGGAAGACACCAGTGTGGTCAGTGAGGACGATTGCAAGCAAGTGGGTCCCAAGAACAAGATGTCTGTCGCCTGACAGGCGGCGGATTTCGTCCAGACACACCTATCACTGGCATTTTCAGTGTACAC-----------------CCAGCAGAGTTCCAAGGAGTCCGCCACTCTGTAGTCATTTTTCTCGCTGCAGTTGGATATCCTATCTGACAAGATATGCACAGTTCAGGATGGGTTGGAAGGTTTAGTGGCAAGAGAGTCTATCCAAGGTTACACCACCAAAACCGAGCAGGAGATTAAAGTCAGCCGCAGAGTGATTCTAGAGAAGCTTCCCCCAGTCCTCCCTCGTGCTCCACCTAAAGTGCTTCGTCGGTGAGAACACAGGCAGATGCCAGAAGCTGGTCAGGAACGTTGACGACACTGTGGACTTGGAGATCAGCAGAGAACGGCTTTCTCCAGGCTTCAAAAATAAACATTTTAAATGCCACAGAACGTAGAGGCTGTTCACAGTGGTT-----TCATGGTGCCAGCGCTACAATCGGCCACTACATTACGGACATCTTCCAGATTGGGCTTAATGGCTGGCTGTGAATTGATGACCAAACGGTCAAGGTTATTAATCAGTACCAGTTGGTGAAGTAGACTGCTGACTTCTGGCTTGCACAGCCTACCTCCTGCATTACCGCCATGTGGACCTGCTGTAACCGTGCCCGTGTGT-CTGTGT---------GTGCCTGCTTCCTACAACTGCCAACT--CACTCACTACCCACCTCTC--TAGTGGCTCTGTAGAGAGA------CTCTCCCTCTGCGCCAATGGGCTTG--------GGAGATTCCTGGGGGTC--TGCGCAGCGCAACTC---------------------------------------AGTGAGCTGCCAC-------------------------------TTCTGAAGAACTGCTGGTTCCTGGGCGGAGGCGGCGGTTTACACTGTGTCCCAGGCTAGTCGCATAGTAGAATAAGTCCCGCACCAACAGCTCTTGCAAATTTGTGAAAATGAATTTTATCTTTCCTTTAGAAAATATTTTTTAAATTCATCACACTTTCCTCCTTTACCCTTCAGTTTTTGATAAATGACAAAAATGAGCCAGTTATC--AGATGAGGTAGTTCTTACTTCAAAA-AGAAATAAATACAAGAAATATATTGCAGGTTCCTAACAGGAAATGCATTTTAACGATTGTGAGAGGGAAACCCGCTGACGTAGACACCGCGGGTCAGAC----------------TCAGGCTACAGAAGTGGGTAATTGTAACTTCGTTACCA-TGAAAAGATTTCAAATCTCATTCATG---CTGTGTACAC---ATGAACAGTGGGCAAAATGATGGACTGACACTTCCCAGTGTCTGCTGTGT---AATCTCCTG-CCACGCCTCTCTGATGCCCTGTCCCTCA-GGTACACAGAATAG-GATTCCTAGGAGTATAAAGTTGTCACTCTTCAATAAAGGTCACAAAGTTGGTTTAAAAAAAAAAAAAAAGTAATA a score=23474.000000 s hg15.chr22 14792276 419 + 49476972 TACCAGCCTTGTCTGGCTGACATATACCTGAGGGAGTGTGGAAAGTGCCG-----AATGCCTGAAGATAAATCAACTCTTCCTCTGGGAGGTGAGTTTATTCTTCTTTGAAACCCATGGGTA-TTTAGTGTCTGGAGATGG-TGGTATGGAGTACATAG----AGAAGCCCTTCATTAGGAGTGAAC----TCTTACTTATTTTCTCTGATGAACTCTCAGACTATTTTGCTGCCTCAAATTGCACT--------------------ACGACCTGTCAGGCGTTAGAG---AGATCAGCAGTGGAGACAGTCCCAGGAAACAGTCTGGAAACAAAAGGGTCTGCCCCTCTCCTGGGTACATCAAATATGGAAGCATCACATTTGCCAAGAGACAACACCATAAGAGGATAAC----TGACAGCAGTCAATTCTATCCTGAAAATGCTCTGAGGCTTTAAGC-------- s mm3.chr6 1419602 335 - 149950539 TATGAACTTTTTTCTGTTGATGTATATTTCCCAGGGCACTGGACATACTG-----AAGACATCAGGAT-----AATCCCTTCTCTGGGAGGGAAGTTCATGTTTCCTTTTAGCTTTGGAGTATTTTAGTGTCTGCACATAGTTTGGAAGGAGAAGGTGGCCCAGGGAGCCCTTTACT-GTGGTTAGC------------------------------------------------------------------------------------TGAATGAGGCCCTTGG----AATTCAGTTCTGG------------------GTCTTGAATCAAGCAGATGGGCCCTTTTCCTGGTACCA-CAGTTAAGG----------------AAGAGGTACCACTATAAGATGAAAGCTTAGTGACAAATGCCAATTCCATATTGAACATGCTCTGGGGCTTTCTACCGATGTAC s rn2.chr4 658630 423 - 183307734 TATGGAC-TTTTTCTGGTGATGTATACTTGCCAGGGCACTGGACATACTGGAGACAAGACATCAGGAG-----AATCCCTTCTCTGGGAGGGAAGTTTATTTTTCCTTTTAGCCTTGGAGTATTTTAGTATCTGCATACAGTTTGGAAACAGAAGGTGGCCCAGGGAGCCCTTCACT-GTGGTGAGCTGCATGTTACTTCCCGTCTCAGGTGAACTCTCAGA--GGTTTGCAATCACATAGTTCCCTTGCAGGTATCAAAGAGGAGAACAGTGGATGAGACCCTTGGAATTAATTCACTTCTGG------------------GTCTTGAGTCAAGCAGATGGGCCCTTTACCTGGAATCA-TGGTTAAGG----------------AATAGGTGCCACAATGAAATGGAAGCTCAGTGACAAATGCCAGTTCCACACTGAACAAGATCTGGGGCTTTCCA--GATGTAC a score=55217.000000 s hg15.chr22 14792699 721 + 49476972 TTTACTGCCTTGACATTGGGCCTCAGAGTACACCTGCCTTTTCTCCCACTATCCTGATAAATTGTGCACTCTAAAATGTTTCTCTGTATCAATGTAGCAAACCTCCATTTATTAGCAACTTTAAGTAACCTCCAGGTCCTTTAGATGACTTTCATTCTTCTTTGTCCTGGACATTTTTATATGACAGACAAAAATATCTATTCTCAGAGCTGGAGGAGATAAAAATGTTTTCCCTGAAGGGAATGAACTCTTAATTAAGCTAAAAGTTTTTAAA--GAGTATATATTAAATGTAAATACAGTATTATAGAAAATTATAATGTAATAAATTTACTGTGAAAGAGTCCATTTTTCTG-----------GTATAATACTTTTTA--TGTAGAGTTTAAAAAAAATTGAACAAAAAGCAAAGTAAACTTAGTGAAATGGAGCAGAATAAAGAAACAGAAAACAAACCTG---TCCTGAGACCCAAGCTGTGTCCTACGATGAAAGT-GGTTTCTGCTGATTGGCA-------------------AGAAGA-GAAGAATCCTAGACACTATTTCTCTTGCATAATAGGACAGTAAGGAAAGGGTGTCTCAGCCAAAGAAGTCAAGAGAA---CTTCTGCCAGATCTTGGAGCAATTCTTATTCTTCGTTAGTTCTTCTTTACTAATCATTTGATTAACTGAtattaaacactccctagcactgcaataagtgttttatataactttattcaacctcacaacaatcaaa s mm3.chr6 1420303 602 - 149950539 CGGAGGACCTGGGTATTA----TCAAACCACGTGTGCCTTTTCTTCAGCTCTCCTGAGGAACCA-GTAATTTGAAATGTTCCCTTGTA-------------------------------------------CTAGTTCCTCTAAATGGCCTCCATT----------TTGAGGATTTTTAAGTGACAGGTAAAAACATCAG----------CAAGAGAGACAGAAA---------TGAAGGGAATGAGCTCCCAATTTAGCTGAAGCTTTTCAAAAGAAGTGTATTTTAAATACAAGTACAATACTGCATGAAATTATATACTGGCAGATTTACCATCTAACAGTCATTTTGTGTG-------------------ATTTTTAAATGTAGAGTTTAAAAGACA------------CAAAGCTCAAGTTGT----TGGAGCAAAAT-AAGAAGCAGAGAACAGAAATAAACTTCTGAGACTAGAACGATGTCCTATGAAGAAAGTGGTTTTTTGTTTATCATCATCTCATCATCATCACCACCACCAAC-AAAACAGATTAGAGACCACTTC-----------AGCTAAGGTAGGAAAGTCTGTCCTAGCAGAATCCATCCACAGATCATCCTCTGCTGGATGTTAGAAGAATTA-GATTCTTC---------------CCAA-----------------ACCTGTTATTGTCCAG---CATAGCAACGGACTTATATAAGTTTGCTCATCATCACAACTGTAAGG s rn2.chr4 659052 607 - 183307734 CAGAGGACCTGGGAAT-------CAGACCGCATGTGCCTTTTCTTCAATTCTCCTGAGAAACTA-TTAACGTGAAATGCTCCCTTGTA-------------------------------------------CTCGTTCCTCTAAATGACCCCCATT----------TTGAAGATTTTTAAGTGACAGGTAAAAACATCAGTTCTTAGAG-CAAGGGAGACAGAAA---------GGAAGGGAGTGAACTCCCAATGTAGCTGAAGCTTTTAAAAGGGAGTGCATTTTAAATACAATTACAGTACTGCCTGAAATTGTATACTGGCAGATTCACCTTGTAACAGTCACTTTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTAAGTATAACACCTACAAGACA------------CAAAGCTCAAGTGGT----TGGAGCAAAAT-AAGAAGCAGAAAACAGAAATAAACTTCTGAGAGTAGAACCATGTCCCATGAAGAAAGT-GTTTTTTGTTTATCAGCA-------------------ACAAACGAAAACAGACTAGAGATCACTTC-----------AGCTAAGGTAGGAAAGTGTGTCCCAGCAGAATCCATCCACAGACCATCCCCTGCTGAATGCTGGAGGA------ATTCTTC--------------ACCAA-----------------ACCAATTATCCCCCAGCACCATAGCAATTGACTTATATAAATGTGCTCATCATCACAACCGTAAGG a score=16699.000000 s hg15.chr22 14793420 262 + 49476972 tgggcccattttacaaatgaaggacctggggttcagagaggccaagggactttc--tcaaagtcacacagctagttagttgtggagctatgc--caaactcatgtcgg----aatcaaaaatgtttcttctgaaattttata-ctatTCATTGTACTTGCTTTATCTAGTGACAATGCTAAGTTCATTAAGAAGCGAGAAACCACTTCTTTGTATAGTATTCCCAAGTACCTCATGCAATCCTATACAATTTAGCAAAATGTTTCTTTAAG s mm3.chr6 1421249 207 - 149950539 aGGGGCC-----------------CTGGGGACTCTGAAAGACTAAAACAACTGTAACACATTTCACACAGATAACAAGTTAT-CAGTCATGA------CCCTTATCAGTCCAACTCAAAAAATTCTCTCCTGATCATTTATA-CCCT-------------ATTATCTAGTGA------------TGCTGAGAAGTGAGGAACACAGTTGTAGCCTAGTGATTC-----------TGCAACCCTGTAC---TTAACAAGATTTTTCTTTAAG s rn2.chr4 660337 214 - 183307734 aGGGGCC-----------------CTGGGGGCCCAGAAAGACTGAAACAATCCTAAACTAATTCACACAGCTAGCAAGCTAT-CAGCCACGAGTTGAACCTGTATCAGCCCAACTCCAAGACTTCTCTCCTGATCATTTATAACTCT-------------ATCATCTAGTGA------------TGCTAAGAAGTGAGGAACAGAGGTATAGCCTAATGTTTC-----------TGCAGCCCTATAC---TTAACAAGGTTTTTCTTTAGA a score=121362.000000 s hg15.chr22 14793682 959 + 49476972 AATTTTCTATCCCCCTTCTCTTTCAGCAGTATATTCCCCACCAGGGGATGAAAGAGGTAACAGGGACAAGGTAGCTAAGGCTAGCACCGTTTCAAAGCATTTTGCTGCAAAACTGTTTCTCTTCATCGTCTCATTAATAGACAGCTACAAAGAATCAAAGAG--AGCAACATTCTACTCACACCTTGATCCCTTTA-------------------------TTTGACC--AATTACTCAAGGGAATCGACGATTTTTTTTTTGGCTCCACAGGGCACGGATAAACAACTTCATCGATGTGCTTCAGGTTACCATTTGAAAAGGCAGTAGAGATATGTATAAAGGCTTCCAGCTTTGGCATCTGACTAGCC----GTAAGAGCTTCTGGGTGGCAGTGATGTTAAGTTGCACAGCATGTCTACAGAAGATTAAGCAGAAGGAAATACAGTGAGATAAGTCAGCAT------CATGCCTTGCTATAACTGCACCTACTCCCATAACTGGCATACC---------------------------------TATCAGATTTTG-----------------GTGACTGCACCAA-------------------------------------------AACACCAGGAAGAAAAGGATGGGGCACGGCTGCACAGTTATGTGATACTTGGAATGTCTTATGTATTGATGATGTGTTTGTGTACATAAACCCTATTCACTGATGC-ACTGTA--TGGCATATTTAGAGGTCACTTGGCTCTAATC----AACTGGAAAAAGAATCA-CAATCCTCTGAATTTACAAAGGTGCTTCTATAAGCAGCCATTAAAAGAACAAAAAACATGTAAATTAAGCATCTAACTGAAGAAATTGGAAAATATAAATAAACTGGAGAGAAGCAACAGTGGATTTTTAAATGAGCAATATAAGTTGTTATAAAGTTCCAGGCCAGACATGAAAATTGATGTCAAAATCTGAAATTGCAACTACTGGAATACAAAGCTATATAGAC--AGTAT--GTGATAACAATGAAATACTTCATTCTAGGAA-TACATGGTTTATCGAATACCAGGAAACTTATTAATTT s mm3.chr6 1421573 1060 - 149950539 AAATTTCTATCTTCCTCCTC-TTCAGTGGCATATCTCTTACT---GGAAGAAGGGACTAGCAGAGAAA--GTAA--------AGCATTTTCCCAAAGCACTTTGTTTACAAAGTGTCCTACCTCATAACTTCAATA----GCGACCCCAGAGAAACCAAGAGGAAGCCATGGGCTGCT-GCCC----AACCCCTCACCATGTGCTGCTGCCCAGTCCCTAATCTGATCCAACTTACTCCATGGAGTCAATGA--TCTTTCTTGGCTCCACAGGGCATGGGTAGATGACCTCATCAATGTGGCTCAGGTTGCAGTTGGAAAAGGCAGTGGAGATGTGGATGAAGGCTTCCAGCTTTGGCATCTGGCTGGCCATTAGCAGGAGCTGCTGGGTGGCCGTGACGTTCAGCTGCACAGCTTCTCTGGAGAGGATGAAGGAGAAAGAA--GCAGTAAAGACACCCAGCATAACTGGTGTACCACACTGTGAGTATACCTTCTCCAGTGACTGCCATATCACACTGTGAGTGTACTTACCTCGGTAGCTGATATATCAAGCTTTTTAACTGGTTTATGTGCAATGACTATACCTACTTCAGTAATAGGTAGATGGCTGAGA---------CACATTGTGAGACAAGGAGGAAAAGGATGGTCCGTGGTTTCATAGTTCTGTGACTCATGAAAT-TGTAACATGCTCCTGGTGTG--TGCGGTCCTTAGTCCTTGTCACTGAAAC-ACTGTAAGTACTGTGTCTAGAGGTTACATGATTCTAATCATTAAAATGGACAAAA-AACA-TGGCCCTTTGAATTTACTAACTGGCTTCCATAAGTGGCCATTGAAAGAACAAAGCCCA-ATAAATAAAGAATCTAACTCAAGAAGATGGAAAATATAAATAACATGGAGGGAACTAAGAGTAGTTATTTGAAACAACACTGTTAGTTGTTGTAAAGATCCAGGCCAGCCTTGAAGATTGATGCCAAATTCT-AAACTGTAGCTGATACTGTAGAAAGCTATATAAACTCAGTATACGCAGTAAGATGGCCAGAATTCACTCAAGGGGACACATGCTTTATCCAGCACCAGGAAACCTACTACTTt s rn2.chr4 660700 1001 - 183307734 GATTTTCTATCTTCCTTCCC-TTCAGTGGTGTATCTCTTACT---GGAAGAAGGGACTAGCAGAGAAAA-GTAA--------AGCATTTTTCCAAAGCACTTTGCTTTCAAAGTGTCCTACCTTATAACTTCACTA----ACAACCCCAGAGAAGCCAAGAGGAAGCCGTGTGCTGCT-GCAC----AGCCCCTCA-------------------------TCTGACCCGACTTACTCCATGGAGTCAATGA--TCTTTCTCGGCTCCACGGGGCACGGGTAGATGACCTCATCGATGTGGCTCAGGTTGCAGTTAGAAAAGGCAGTGGAGATGTGGATGAAGGCTTCCAGCTTTGGCATCTCGCTGGCCATGAGCAGGAGCTGCTGGGTGGCGGTGACGTTCAGCTGCACAGCTTCTCTGGAGAGGATGAAGTGGAAGGAA--GCAGTGAAGACACTCAGCAAACCTGGTGTAC-------------------------------------CACACTGTGAGTGTACTTACCCCGGTGACCCATGTGTCAAGCTTTGTAACTGGTGTAGGAGCAATGGCTGTGCCTACTTCAGTAATAGGTGGATGGCTGGGATTTGGGTGGCACATCATGAGACAAGGAGGAAAAGGATGGCCCATGGCCTCATAGTTCTGCGACACATGAAAT-TGTAACGTGCTCCTGGTATG--TGGAGTCCTTAGTCCTAGT--CTGAAGCAACTGTAAATATCGTGTCTGGAGGTTACGTGATTCTAATCAGTAAAATGTACAAAAGGACGTTGGTCCTTTAAACTTACTAACTGGCTTCCATAAGTGGTCATCAAAAGAACAAAAACCA-ACAAATGAAGAATCTACCTC---TAGATGGGAAATAGAAATAACATGGAGGGAGCTA--AGTAGTTATTTGAAATAACAGTGTGGGTTGTTGTAACGATCCAGGCCAGCCATGAAGATTGG-GCCAAATCCT-AAACTGTAGCTGATACTGTAGAGAGCTATATAAACTAGGAATA-ACAGTAAGACGGCCAGAATTCACTCAAGGGG-CACATGCCTTACCCAGCATCAGGAAACCCATTACTCT a score=4884.000000 s hg15.chr22 14794651 34 + 49476972 AAAAAGAGAAAAACTATA---------------TAATAATCTGTATGTA s mm3.chr6 1423420 49 - 149950539 AGAGAGAGAAAAACTGTACCATCATGCACATATTACTATTAAGTATGTG s rn2.chr4 661711 49 - 183307734 AAAAAGAGAAAAACTACACCGCCATACACCTGTTACTGTTAAGAATGTG a score=39799.000000 s hg15.chr22 14794685 394 + 49476972 TTTT------GAAAAGTTTAAG----ACGATGTTTAGTTTTCATTTCCAATTTCATTAAATGAATTCACTAGAATAGGAATAAAATGATTAAACAATATGTATTTAATTTGCTagccaatgtcattcttaatggtgaaaagctaggaatactgcttgtaaagccagggctagaaataatgcctgcagtca----caactactacttaacattgttctgaggtcctagccttgtaagtaattagaaagaaaaCTAAAATTAATGAAGAAATATAGA-TATTAAAAAGACAGTCACAAAAATTACTATAGGATTATATAATTGCATACCTGGAAAAC----AGAAGCAGCTTTTTTAAAAAGCTAAAGTGTACTATA---GTTCAGTAAGGTGTCCACTGATAAAAATTATATAAAAA s mm3.chr6 1423675 378 - 149950539 ttTTCTTTCAGAACAAAATGAATGAAATGACATTTTATATTCATCTCCCAC----ATAAAGAAACTTACT--------AATGAAATGATAAAAGATCACACATTTCAAGTTCTATCCAAAGCCATAACTAGTGGGGAACAGCTAGGAATACTGCCTTT-----CAGGG-TAACAAAGATGCCTTCAGACATTGCCAGTTAGCCCCTGATGTTACTATAAGGAACTACCCC-----ATGATTGGAGAAAAACC---AGTTACTAAATGGATGCAAAGCACTGCAAGCCCAGTCACAAAAACTGCTGTAATATTATAGAATGATATATTTGGAAAAT-----AAAGAAGCT----AAAATAATTTGAATGCAGATTATCCATTCAGTAAAACATCTAC---TAAAAATTATGGCAAAA s rn2.chr4 662007 370 - 183307734 ctTTCTTTCAGAACAAAATGAA----ATGACACTTTATTTCCATTTCCCAT----GTAAAGAAACTTACT--------AATGAAATGATAAAAGAACACACATTTCAAGTTCTATCAAAAGCCATAACTAAAGGGGAATGGCTAGGAATACTGCCTTT-----CAGGG-TAACAAAGATGCCGTCAGACATTGCCAGTTAGCCCCTGAAGTT----------ACTACCCC-----ATGATTGGAGAAAAACA---AGTTAATAAATGGATGTAAAGCACTGAAAGCCCAGTCTCAAAAATTGCTATAATATTATAAAATGATATATTTGTAAAATGAACAAAAGAAGCT---AAAAACAATTAGAATGCAGACAACCCATTCACTAAAACATCTAC---TAAAAATTATGGCAAAA a score=4493.000000 s hg15.chr22 14795393 96 + 49476972 CATTA-------GCTTGCCTGTATATAAACAAAAATTAGAGAATACAATG-CAAGAAA-TGTTCAAATGTGAACatttatatcaaa-ttaatcataaattaatata s mm3.chr6 1424053 105 - 149950539 TACTAAAGTAGTGTTCTACTACATCCCAATGAAAACTGGAGAATACTGTGGCCTGAAA-CACACATGCTTGAGCATCTGTGCTTAAAGAAGTCATTAGTGGATACA s rn2.chr4 662377 86 - 183307734 CACTAAAGCAGTATT---CTACGTCTAAATGCAAACTAGAGACTACAGTGACCTGAAAGCACACAGGCTT-----------------GAAGTCATTAGTGGGTACA a score=39753.000000 s hg15.chr22 14795858 551 + 49476972 ACACTGTATT-TTTATTAGAAGCAGGAATTGGGGTAGGGGCAT-----TAAATTTATATAACGCTTTTGAAACAATTCAGAAGCCTTTAATGTGGTCTCTTAACAATCAACGAGTTAGCCACATGACCTCATTT-TGGTAGTATCCACAGGAG-ATTTGGCCTCTACTTCATTGGGC-TCATTGAAGGTAATCAAATCTTTTCTAGTCATGAGAATCTTTGATCTTTAATTATTTTACTAAGTCTTGCTCTTCAAAAATAACTGTCTTATTTAGTCCCATTAACCCACCAAGACCTGCTTACACATATACATATATATATATGTAAAAGAAAAGAGTAAGGTCCCTTAAACTAAGGGGCAATCTCTGTGGAATATTTGGTGTCCCAAGGTGAAAGAGACACTGTAACATTTTACAGAGAATTTGTAGAGTGCTGAGTAAAAGCAAATAAATGAATTCTACAAATTAGCTCC----------------AAGTTT----------------AGAA-------------------CAATTAAACACAAAT--AAGTACATTCTAATTTAAGCAAAAACCATTATACCCA---ATGTACAGATTAACAGAAATTCACAAA s mm3.chr6 1427946 564 - 149950539 ACACTATAACTTTGGAGAGGAGCATAAGTTGGATGGAGGGCAGACACATTACCCTGTGCACCACTTTTGAAAGAGTTCACAG--CCAGAATGTGGACACTT--CAATGAAGGGGTGACTCCT-TG-CCTCATTTGCGAGGGCATCTACAAGAAGGTTTGGCTTTGTTTTC--TGGCCATCATTGGATTTAATCTTCTTTT--------ATGAGAGCCTTTGTTCTCTATGGCCTCTATTAAATCCCTCTCTTCAAACTGAACTAAATTAT------CTAGGAATACACCAGTAGTTG---------GCTCTTTAAT---TCTGAGTGGGAAAATAGTGAGGTCTTTTAAGTTAAAGGGAA--GATGGTGGACCTTCCAGAGATCTACAGTGAAAGAAAGACTCTA-----------AGGAGTTTTCAGGTGTGGAGCTGAAGTA---CCAGGGATATTGGGTGTTAGCTCCAGTCCAGTTGTGATTTAAGTTTTTATAAATCATACTGGAGAACTTATGAATCCAAAATA--TAGTCAAATACATATGCGCGCGCGCGCGcacacacacacacacacacacacacacacacacacacacacacacacacatacaca s rn2.chr4 665582 553 - 183307734 ACACT------TTGGAGAGGAGCATAAGTTGGGTGGAGGGCAGACGCATCACCCTGTGCACCACTTTTATAAGAGTTCACAG--CCAGAATGTGGACTCTT--TAATGAAGGGGTGACCCCCGTG-CCTCATTTGGGAGGGCATCTATAGGAA-GTTTGACTTTGTTTTC--TGGGCATCATTGGATGTAATCTTATTTT--------ATAAGAGCCTTTGACCTCTATTGCTTC-ATTGAATCCCTCTCTTCAAACGGGAATATATTATCTAGTCCTAGTGATAAACCAGTACTTGTTTACTTA-GTACTTTTAT---TCTGAGCAGGAAAATGGTGAGGTCTTTTAAGCTAAAGGGCA--CACTGTGGACCTTCCAGAGCTCTAT-----------------------------AGGAGTTTTTGGGTGTGGAGCTGAAGCA---CCAGGGGTGTTGGGTGTTAGCTCCAGTCCAGTTGCAA-TTAAGTTTCTATAAATCATACTGAAGAACTTATGAATCCAAAATAATAAGTGAAGCATATAT-cacacacacacaaacacacacagacatgcatacatacacatacacgcatacatgcacacacacacaca a score=26808.000000 s hg15.chr22 14796409 390 + 49476972 ATGTTAAAATTTTTGCTAGTTCACCAGTAACTCCCATAAGATGTAAA-GATTAGTCGGCACGTTTTTAA-TGCTTTAGCAAGGATCATTTCTATAACTCCATAAGGCAGCATGGTATAGTGGTAtggccgtcaaacttcggcatatagcagggttgcctaggaagttgctcaaacaaacaaacaaacatatgtcctgaccctggaaattctcattcagcagt-----gtcaaagcttgggcATCTAGCTTTACtttgaacacactctctagtaattctgat-------acactctgaatttg----agaaccattAgtgtattggaaagaactcaggccctttggagccatgaaagactggatttgaattctgattctgccatttatttgctatgtgcctggggcaaa------------------- s mm3.chr6 1428510 362 - 149950539 GCATCAGGCTCTT--CCTCTTTGATAG-CTTTCCCATGGGCTGCAAAGGGTTGATCTGGAAGGTTTTAACTGCCTCAGTGAGGATCATTGCTATTACACCACACAGCAATGTGCTGTGATCGTGTG---------GTTC-----------AGACTGCCTGGAAGGT---------------------GTA------------GAAAATTCCGAATCAACAGTTCTTAGTTGAATTATGGGCACCTGTGCTTAGTACCAGCA-----TCTAATGACTGTGATCAGTGACACACCATAGGTGTGTATCAGAAGTGTGCATATTCTGCAGAGACATCAGACCTATC---ATCATGTCGAGCTGGA-CTAAATCTCCATCCTGTTCTTTATTCTTCATGTCACAAGAGCAAGGTTTAAAGTTCTCTGGACC s rn2.chr4 667044 363 - 183307734 GCATCAGGTTCTC--CCTCTTTGCTAGTCATTTCTGTGGGCCCCAAAGGGTCAATCTGAAAGTTTTTAACTGCTTCAGTGAGGACCATTGCTGTTACACCTCATGGCAGTGTAGCGTGATTGTGTG---------CTTC-----------GGACTGCTTGGGAGAT---------------------ATA------------GAAGGTTCTGAATCAACAGTTCTGAGTTGAAGTGTGAGCGCCTGTGCTTAGTACCGGCA-----TCCAATGACTGTGACAGGTGACACACTGCAGGCGTGTATCAGAACCGTGCATATTCTGCAAAGACATCAGACCTGTC---CTCATGTGGAGCTGGG-CTAAATCCTCACCCTACTCTTCATTCTTCATGTAACAAGATCAAGTTCCAAAGTTCTCTGGGCC a score=52571.000000 s hg15.chr22 14796821 727 + 49476972 ATGTC------------------------------------TAAAATGCCAATCATTTGACTAA--CTTATCAAGTGATCGCAGAGAAGTAG-GATTAAGCACATATTATGCTGTTCTTATAGACAATTTTGCATTTAACAAAATTTTAGTTCATTTTGCATAGTAATCTATAATAAATGCTAAATGCAACACAATGTTTGATTCACCATCTTGTCATGTTTTCTTTCCACACCAAAGGTCAATTTCACAGAGTTCTTTAATAATTCTTTCTTGCAGCTGGGCAGGAAAGGAACTAGGGTGGCTAGGAAGTTGAACAACC--TTAAGATTATTTCTGCTCTGCAACAGAATTGGTGGTGTCGCTACATTATTCGTGCTAGAGGATGGAAGAAGTGTTGATACTAACTCAGAAGTGACAAGCA---ATAGTTT---CCCCTT---CTTCATGATATTGTCATGGAGGAAGAAATTTCCTAGgagaggcaataaactacaatagggaaagtatgggctttagagattag-agacctgcattccaattttgctgtataa----ctgggcacaaattacataaccctggatagaggacagctttcatgaactaatatctcatctgtgatataggaataggcacactacagagatttctgag---gattagagtaatgaagtcaaatgtttgtcttagtgcctaccacactgtaggtccctaatgaTAGGAAAATTCCCTTTCTACTTCCACAGCAGTACTCCATTTCCAAAAGATGCTGGTCAGAAAGT s mm3.chr6 1429057 661 - 149950539 ttctcttctcttctcttcttcCTTTTTTTTCCACATTTATTTAAGATGCCAATCATGGGA-TGCCAATCATCCCATAACCTTGGAGAATTAGAGATTCA--CTATAAAAGGCTATTCTTGAGAACAGTCTTGCACTTGTCAGA----------ACTTTTTATAAGAACCTATAATCAGTACTAATGGTGGCATA------TATTAATCATCTTTAT---------CTCTAC----AAGGTAGGTTCCATAGTGTGCTTTGAGAATCC------ATGTGTGGGTAGGAAAG------AGTTAGCCTAGAAGATAGAGACCAAATATAGATTGTTTCTATGCTCTAACAGGA---------------------CCATGCT----GAAGAGAAAGGTGTTGAC-------------TAACAGGTGGACAGGGCTTCAGCACTTTGGCTTTTAAAGTTTTGTCACCAAGGAAG-CATCTCTGAGAGGAGGT----------------GAGAGT----GCCTTGGTTCTCAGAAGAGCTGCCTTTCAGCTTTGCTGTGTCACCTCCTTGGCACAGATCACACAGCCTGGGGGAGAGGACAGTTTTCTGGGATTAATTTATCATCTGTGACAT-AGAATGAACACATCACAAGGATTTCTAAGATTAAATATGATAAAGAAAGTCTGTGCTTGGCACAGCAACTGTCACTTAATGGGTCCTTAAAAACAGGA-----------CTATT---------GTTCTTTATTTCCCGAAGCTGCCAAACAGGGAGT s rn2.chr4 667408 650 - 183307734 ttctttttttttttttttttttttttttttGCATGGTTAGTTAAGACGCTGATCATGGGACTGT--ATTGTCCTGTGACTTTAGAGAATTAGAGACTCA--CTATAATAAGCTATTCTTGAGAGCAGTCTTTCGCTTGTCGGA----------AGTTTTTATAAGAACCTATAATCAGTGCTAATGGAGGTACA------TGTTAGTCATCTTTGTATGGTTTGTCCCCAG----GAGGTACATTCCACAGTGTGCTTTGAGAATCC------GTATGTGGGCAGGAAAG------ACATATCCTGGAGGGTAGAGGGCCAACACAGATTGTTTCTAGGCTCTAACAGGA---------------------CTGTGTT----GAAGAGAAAGGGGCTGAC-------------AGACAGGCAGACAGGGCCT-AGCACTTTGG-TTCTAAGATTGTGTCGCCAAGGAAG-CAGCTCTGAGAGGAGGC----------------GAGAGT----GCCTTGGCTCTCAGAAGAGCTGCCTTTCAGCTTTGCTGTGTCACCTCCTTGGCACAGATCACACAGCCTGGGGGAG-GGCCAGTTTC--------------TCCCCTGGCACGTCAGAACGAACacctcacaaggatttttaagattgaatatgataatgaaagtctgcgcttgccatagcacctgtcacttaatggacccttaaAATCA--------------CTATT---------GTTTTTCATTTCCCAAAGCTGCCAAACAGGGAGT a score=56548.000000 s hg15.chr22 14798394 439 + 49476972 CTCGCAGTCCCAGCGCTCCCAACGAG----GGTGCCTCCCGTTGACAACAACCTGAGCAGACCTGCGCCTAGGCCCTCCGCCAGGCCTGTGCTCGCCTCGCCCAGGGGGAGGAAGACTGAGCCCGGCTCAGGCGGCGCGGCGCGCGGTCC-CATTTCCTTCCAGCGATCAG-------TCCCCTGGCTTGCCAGCGAGTCCCCTGGCTTGCCCCAGCGCCCGCCGCGGCCTCCAGCTGCCCCCGCCCTGACCACCGGCCCGGACGTGCCAGCGGCCGCCGCTGGCAGCGCCTGTGCCATGGGGCTGCCCACTCTGGAGTTCAGTGATTACTACTTGGACAGCCCGGATTTTAGGGAGCGCTTGCAGTGTCACCAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCACTGGGGCGTTGAGga s mm3.chr9 115234354 341 - 124467299 CTCGCCACCCCCACGGTGCGAGCGAGCGACGATGCGAGCCGGTGACA-----------------GCGCCCGGAGCCTCCGCCCGGCCT---------------CGGGGCAGCTGCACTGAGCCCGGC-------GCGCGGGGCCCAGTCCTCCGCTCTCCCCAGCGCTCCC--------------------CCGCG---TTCGCAGTGTCCCC--GCACCCGCCGCA---------------------------------------GCTAGCGGCCGCC-------GCGCCTGGGCCATGGGGCTGCCCACTCTGGAGTTCAGCGATTCGTATTTGGACAGCCCGGATTTTAGGGAGCGATTGCAGTGTCACGAGATCGAGCTGGAGAGAACCAACAAGTTCATCAAAGAGCTGCTGAAGGATGGCTCTCTGCTCATCGGGGCGCTGAGAA s rn2.chr8 121580364 363 - 127756414 CTCGCCACCCCAACGGTGCGAGCGAGCGACGATGTGCCCCGGTGACA-----------------GCGCCCGGAGCCTCCGCCCGGCCG---------------CCGGGCAGCTGCACTGAGCCAGGC-------GCGCGGGGCTCGGTCCTCCGCGCTCCCCAGCGCTCCCGGGTGCTCCCCGTTGCTCCCCGGCG---TTCTCAGTGTCCCCCCGCATCCGCCGCA---------------------------------------GCTAGCGGCCGCC-------GCGCCTGGGCCATGGGGCTGCCCACTCTGGAGTTCAGCGATTCTTATTTGGACAGTCCGGATTTCAGGGAGCGATTGCAGTGTCACGAGATCGAGCTGGAGAGAACCAACAAGTTCATCAAAGAGCTGCTGAAGGATGGCTCTCTGCTCATCGGGGCGCTGAGAA a score=6214.000000 s hg15.chr22 14798833 50 + 49476972 caggtaat---------------gttgattgcctgcccagttccct-tgccctttcatcctttcca s mm3.chrX 66299087 66 - 149996094 AAGTAAGTGGAAGGCTTCCATGAGCTGTTTGTCTGAGTAGGTGGTTCTGGCCTTTAAACCTTTCCA s rn2.chrX 115473024 66 - 133900917 AAGTAAGTGGAAGGCTTCCGTGAGCTGTTTGTCTCAGTAGGTGGTTCTGGCCTTTAAACCTTTCCA a score=28013.000000 s hg15.chr22 14798889 143 + 49476972 ccctgagttccttcagTAACACACCTCTACCCAGGT----------TGGAGATCTGTCTATGGCAGTGCAGAAATTTTCCCAGTCATTACAAGATTTCCAATTTGAATGTATTGGTGATGTTGAAACAGATGATGAAATTAGTATTGGTCAGT s mm3.chr9 115293048 153 - 124467299 CTTTGATTTTCTGAAGCACCTCACCTCATGATGGGTCTCTCTTCACTGCAGATCTGTCCATGGCTGTACAGAAGTTTTCCCAGTCTCTGCAAGACTTCCAGTTTGAGTGTATTGGAGATGCAGAAACTGATGATGAAATTAGTATTGGTGAGT s rn2.chr8 121651533 153 - 127756414 CCTTGATTTCCTGAAGCAGCAAACCTCATGATGGGTCTCTCTTCACTGCAGATCTGTCCATGGCTGTACAGAAGTTTTCCCAGTCTCTGCAAGACTTCCAGTTTGAGTGTATCGGAGATGCAGAAACTGATGACGAGATCAGTATTGGTGAGT a score=10643.000000 s hg15.chr22 14799035 49 + 49476972 TAAAATAATTTGCAAGACTACTCATTGC---AGTAGAAGAAAAGCGAAGACT s mm3.chr9 115317800 52 - 124467299 TGAAAGAATTCGCAAGGCTACTTATTGCTGTAGAAGAAGAAAGGCGTAGACT s rn2.chr8 121674150 52 - 127756414 TGAAAGAATTTGCAAGGCTACTCATTGCTGTAGAAGAAGAAAGGCGTAGACT a score=17677.000000 s hg15.chr22 14799084 74 + 49476972 GACCCAAAACGCTAATGATGTATTAATTGCACCACTTGAGAAACTTCAAAAAGAACAGATAGGTGCAGCAAAAG s mm3.chr9 115357375 74 - 124467299 GATTCAAAATGCTAATGATGTATTAATTGCACCCCTTGAGAAATTTCGAAAAGAACAGATCGGTGCAGCTAAAG s rn2.chr8 121710526 74 - 127756414 GATTCAAAATGCTAATGATGTGTTAATCGCACCCCTTGAGAAATTTCGAAAAGAGCAGATCGGTGCAGCTAAAG a score=18854.000000 s hg15.chr22 14799158 146 + 49476972 GTGGAAAGAAGTTTGACAAAGAGAGTGAAAAATATTTCTCTATCCTTGAAAAGCATTTAAATTTATCTGCAAAGAAAAAGGAGTCTCATTTGCAAGAGGCAGATACACAAATTGATTGAGCACATCAGAACTTCTATGAAGCATCA s mm3.chr18 39385397 130 + 91041441 CCAAAAAGAAGTATGACAAAGAGACCGAGAAGTACTGCGGCACCTTAGAAAAACATTTGAATTTGTCTTCCAAAAAGAAGGAATCCCAGCTACAGGAGG-------------TAAGGGAGCA---CAGAGCTCCTGCGTGGTATCA s rn2.chr18 30516275 130 - 82509072 CCAAAAAGAAGTATGACAAAGAGACAGAGAAGTATTGTGGCACCTTAGAAAAGCATCTGAATTTGTCTTCCAAAAAGAAGGAATCCCAGCTACAGGAGG-------------TAAGAGATTA---CTGAGCTCTTGCATGATATTA a score=1664.000000 s hg15.chr22 14799310 11 + 49476972 TGTCTTTAAAt s mm3.chr9 115394615 11 - 124467299 ACTTTTTAAAT s rn2.chr8 121744455 11 - 127756414 ACTTCTTAAAT a score=8987.000000 s hg15.chr22 14799634 38 + 49476972 TATGTCTTTAAAATTCAAGAGGTTCAAGAAAAACAGAA s mm3.chr9 115412684 38 - 124467299 TATGTCTTTAAGATCCAAGAAGTTCAAGAGAAGAAGAA s rn2.chr8 121753749 38 - 127756414 TATGTCTTTAAAATCCAAGAGGTTCAAGAGAAAAAGAA a score=26727.000000 s hg15.chr22 14799672 132 + 49476972 GTTTGAATTTGTTGAACTGCTTTTGTCATTTCTTCAGGATTTATTTACTTTTTTACCCCGAGGGATATGAACTTGCCCAGGAATTTGCACCAAATAAGCAACAGCTGCAGTTCGACTTGCAGAATACAAGGA s mm3.chr9 115422780 129 - 124467299 GTTTTTATCTTTT--GCAGCTTTTGTCCTTCCTTCAGGGTTTGTTTAC-ATTTTACCACGAGGGATATGAACTTGCCCAGGAATTTGCACCGTACAAGCAACAGCTACAATTCAACTTGCAGAATGTAAGGA s rn2.chr8 121760512 128 - 127756414 GTTTTTATCTTT---GCAGCTTTTGTCCTTCCTTCAGGGTCTGTTTAC-ATTTTACCATGAGGGATATGAACTTGCCCAGGAATTTGCACCGTACAAGCAACAGCTACAATTCAACTTACAAAATGTAAGGA a score=18910.000000 s hg15.chr22 14799804 84 + 49476972 ATAATTTTGAAAGTACTTGACAAGAGGTAGAGGGGTTGATGCAAAGGGTGAAATCTGC--------------------------------------AAGGCTATCTGCATGTCCAGGAGAAA s mm3.chr9 115425162 122 - 124467299 ATAACTTTGAAAGCACTCGGCAAGAAGTGGAGAGACTGATGCAGAGGATGAAGTCTGCCAATCAAGATTATAGACCTCCCAGCCAGTGGACCATGGAGGGCTATCTTTACGTCCAGGAGAAA s rn2.chr8 121762389 122 - 127756414 ACAACTTTGAAAGTACTCGACAAGAGGTGGAGAGATTGATGCAGAGGATGAAGGCTGCCAACCAGGACTACAGACCACCCAGCCAGTGGACCATGGAGGGCTATCTTTACGTCCAGGAGAAA a score=23407.000000 s hg15.chr22 14799913 105 + 49476972 AACAGCCTTGTTACTAGCTCACCGGAAATGT-----TCAAAATCTTGTATCCGACGAAAGACAGATTCAATTGACAAACAATTCTGCTTCGACATACAAGTAGTTGAAAG s mm3.chr9 115438282 110 - 124467299 AACGGCCTTGTTACTGGTTCGCCTGAAATGTTTAAATTAAAGTCGTGTATCCGACGGAAGACAGATTCCATTGACAAGCGCTTCTGCTTTGACATAGAAGTGGTCGAAAG s rn2.chr8 121779041 110 - 127756414 AATGGCCTTGTTACTGGTTCACCCGAAATGTTTAAGTTAAAGTCATGTATCCGACGGAAGACAGATTCCATTGACAAACGCTTCTGCTTTGACATAGAAGTGGTCGAAAG a score=17768.000000 s hg15.chr22 14800018 81 + 49476972 CCATGGGATCATCACATTACAGGCCTTCTCAGAAGCTAATAGGAAACTCTGGCTTGAAGCCACGGATGGGAAGGAACTGAT s mm3.chr9 115440988 81 - 124467299 GCATGGCATCATTACGCTACAGGCATTCTCTGAAGCTAACCGGAAGCTCTGGCTGGAGGCCATGGATGGGAAAGAACCGGT s rn2.chr8 121781609 81 - 127756414 ACATGGCATCATCACACTACAGGCATTCTCAGAAGCTAACCGGAAACTCTGGCTGGAGGCCATGGACGGGAAAGAACCGGT a score=6372.000000 s hg15.chr22 14800099 32 + 49476972 TTATACTCTGCCTGACATTATAAGCAAGAAAG s mm3.chr9 115442400 32 - 124467299 TTACACGTTACCCGCCATAATTAGCAAGAAAG s rn2.chr8 121782843 32 - 127756414 TTACACGTTGCCCGCCATAATTAGCAAGAAAG a score=14105.000000 s hg15.chr22 14800135 64 + 49476972 AATGTATTTGAATGAAGCAGGGTTCAATTTTGTGAGAAACTGCATTCAAGCTGTGGAAACCAGT s mm3.chr9 115453217 64 - 124467299 AGTGTACTTAAATGAAGCAGGCTTCAACTTTGTGAGAAAATGCATTCAAGCTGTAGAAATGAGA s rn2.chr8 121788498 64 - 127756414 AGTGTACTTAAATGAAGCAGGGTTCAACTTCGTGAGAAAATGTATCCAAGCTGTGGAAACGAGA a score=18549.000000 s hg15.chr22 14800199 77 + 49476972 GGTATCACCATTTTAGGCCTCTACTGAATAGGAGGAGTGAACTCCAAAGTTCAAAAACTCATGAATATCATATTTTG s mm3.chr9 115454446 77 - 124467299 GGCATCACCATCTTGGGCCTGTACCGAATAGGAGGAGTGAACTCCAAGGTCCAGAAACTCATGAACACCACATTTTG s rn2.chr8 121789737 77 - 127756414 GGCATCAACATCTTGGGCCTGTACCGAATAGGAGGAGTGAACTCCAAGGTCCAGAAACTCATGAACACCACATTTTG a score=20497.000000 s hg15.chr22 14800276 81 + 49476972 TCCTAAATCCCCTCCTGAT------ATTGATATTGAACTGTGGGACAATAAGACAATAATGAGTGGGCTGAAAAACTACCTCAGGTG s mm3.chr9 115455258 87 - 124467299 TCCCAAGTCCCCTCCTGATATGGACATTGATATTGAGCTGTGGGACAATAAGACTATAACGAGTGGGCTGAAAAACTACCTCAGGTG s rn2.chr8 121790609 87 - 127756414 TCCGAAGTCCCCTCCTGATATGGACATTGATATTGAGCTGTGGGACAATAAGACTATAACGAGCGGGCTGAAAAACTACCTCAGGTG a score=12317.000000 s hg15.chr22 14800357 57 + 49476972 CTTTGCAGCACCACTGATAACTTACAAGTTACACAAAGATTTGTATCATTGCTGTTA s mm3.chr9 115456130 56 - 124467299 CCTTGCAGAACCACTAATGACTTACAAATTGCACAAGGATTT-CATCATTGCTGTCA s rn2.chr8 121791477 56 - 127756414 CCTTGCAGAACCACTGATGACTTACAAACTGCACAAGGATTT-CATCATTGCTGTCA a score=23856.000000 s hg15.chr22 14800414 102 + 49476972 AATCTGATGACCAAAACTACAGGGTGGAGGCTGTACATGCATTGGTGTGCACATTGCCAGAGAAAAACAGAGAGATGCTGGACATCTTAATAAAACATCTGG s mm3.chr9 115460044 102 - 124467299 AGTCAGACGACCAAAACTACAGGGTGGAGGCAGTCCATGCACTGGTACACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTGATAAAACACCTTC s rn2.chr8 121794617 102 - 127756414 AGTCAGACGACCAAAACTACAGGGTGGAGGCTGTCCATGCACTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTGATTAAACACCTGC a score=36507.000000 s hg15.chr22 14800516 177 + 49476972 TCAAAGTATCACTGCACAGCCAACAAAATCTCATGACTGTCTAAAATCTTGGTGTCATATTTGGCCCAACTCTAATGAGAGCACAAGAATAAACTGTGGCTGCTATGGTGAATATTAAATTTCAGAATATTGT-GTAGAAATTCTGATAGAGCACAGTGAAACGAT------------TTTTCATACTGC s mm3.chr9 115462045 189 - 124467299 TCAGAGTATCACTACATAGCCAACAAAATCTTATGACCATCTCAAATCTCGGTGTCATATTTGGTCCAACCCTGATGAGAGCACAGGAGGAAACTGTGGCTGCCATGATGAACATCAAATTTCAGAACATAGTGGTGGAAATCCTAATCGAGCACTATGAGAAGGTAGCTGGGAGCC-TCCTCACACTGC s rn2.chr8 121796525 190 - 127756414 TCAGAGTATCTCTACATAGCCAACAAAATCTCATGACTATCTCGAATCTTGGCGTCATATTTGGTCCAACGCTGATGAGAGCACAGGAGGAAACCGTGGCTGCTATGATGAACATCAAGTTTCAGAACATAGTGGTGGAGATCCTGATCGAGCACTATGAGAAGGTAGCAGAGACCCTTCCTCGCATTGC a score=27476.000000 s hg15.chr22 14800693 162 + 49476972 TCCAGACCCAAGCATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCAAAGGACAGCCTCAGTCTCGATCTGGATCCCAAAGGACATGAGCAATCTGCCTCTCTACAGGCTCTAGGAAGCCCAGAGGGATGTGTACTCCATGCCTGGCTGAACTTGATA s mm3.chr9 115463387 131 - 124467299 CCCAGACCCCAACATTCCTCTTCCTCAGCCT-------------------------------CAGTCTCGATCGGGATCCCGAAGAACCCGGGCCATCTGCCTGTCCACAGGTTCTCGGAAGCCCAGAGGGAGGTACACGCCGTGCCTGGCAGAGCCTGATA s rn2.chr8 121798265 131 - 127756414 CCCAGACCCAAACATTCCTCTTCCTCAGCCT-------------------------------CAGTCTCGATCTGGATCCCGAAGGACGCGTGCCATCTGCCTGTCCACAGGTTCTAGGAAGCCCAGAGGGAGGTACACACCGTGCCTGGCAGAGCCTGATA a score=87905.000000 s hg15.chr22 14800855 379 + 49476972 GTGATTCCTATAGCAGCAGCACAGACAGCACCCCCATGGGGAGCATCACGTCACTCTCTTCTCTTTCCTCAGAACAAAATAGCACTACAAAGTCAGCTTTCTGCCAGCCCAGGGAGAAATCTGGAGGGATTCCTTGGATTGCAACCC---AATCTTCCAATGGACAGAAAAGCCTTGGTCTCTGGACAACTAATCCTGAATCAAGTTCTAGAGAAGATGCAACCAAGACAGATGCAGAATCAGATTGCCAGAGTGTTGCTTCGGTCACTAGCCCAGGGGATGTTTCCCCACCCATAGACCTAGTCAAGAAAGGGCCTTATGGGCTTTCAGGACTGAAAAGAGCTTCTGCTTCT---TCTCTCAGATCCATCTCTGCAGCTGAAGG s mm3.chr9 115464845 385 - 124467299 GTGACTCCTACAGCAGCAGCCCAGACAGCACTCCCATGGGCAGCATAGAGTCGCTCTCCTCCCACTCCTCTGAACAAAACAGCACCACAAAATCCACTGCCTGCCAGCCCAGGGAGAAGTCAGGAGGAATTCCCTGGATCACAACCCCATCATCTTCCAATGGACAGAAAAGTCAGGGTCTCTGGACAACTAGTCCAGAATCAAGTTCTCGAGAAGATGCAACCAAAACAGATGTGGAGTCAGATTGCCAGAGTGTGGCCTCTATCACAATCCCGGGGAATGTCTCTCCCCCCATAGACCTAGTCAAAAAAGGGCCCTATGGGCTCTCAGGACTGAAAAGATCCTCTGCTTCTTCCTCTCTCAGATCCATCTCTGCAGCTGAAGG s rn2.chr8 121799706 385 - 127756414 GTGACTCCTATAGCAGCAGCCCAGACAGCACACCCATGGGCAGCATAGAGTCACTCTCCTCCCACTCCTCTGAACAAAACAGCACCACAAAGTCTACTTCCTGCCAGCCCAGGGAGAAGTCAGGTGGGATTCCCTGGATCGCAGCCCCATCATCTTCCAATGGACAGAAAAGTCTGGGTCTCTGGACAACTAGTCCAGAATCAAGTTCTCGAGAAGATGCAACCAAAACAGACGTGGAGTCAGATTGCCAGAGTGTGGCCTCGGTCACCAGCCCGGGGGACGTCTCTCCCCCCATAGACCTAGTCAAGAAAGGGCCCTATGGGCTCTCAGGACTGAAAAGATCCTCTGCTTCCTCCTCTCTCAGATCCATCTCTGCAGCAGAAGG a score=37200.000000 s hg15.chr22 14801234 153 + 49476972 AAACATTAGCTACAGTGGATCTATTCAAAGCTTAACTTCTGTAGGTTCCAAGGAGACACCCAAAGCT---TCAAACCCAGACCTGCCTCCAAAAATGTGCAGGAGGTTAAGACTAGACACCACCTCAAGCAATGGCTATCAGCGTCCTGGCTCAGT s mm3.chr9 115465596 156 - 124467299 AAACAAGAGCTACAGTGGATCCATTCAAAGCTTAACTTCTATAGGCTCCAAAGAGTCACCTAAAGCCATACCAAACCCAGAGCTGCCTCCAAAAATGTGCAGGAGGTTAAGGCTAGACACTGCCTCCAGCAATGGCTACCAGCGACCTGGCTCAGT s rn2.chr8 121800466 156 - 127756414 AAACAAGAGCTACAGTGGATCCATTCAAAGCTTAACTTCTATAGGCTCCAAAGAGTCACCCAAAGCCACACCAAACCCAGAGCTGCCTCCAAAAATGTGCCGGAGGTTAAGGCTAGACACCGCCTCCAGCAATGGCTACCAGCGACCTGGCTCAGT a score=15256.000000 s hg15.chr22 14801387 70 + 49476972 AGTGGCAGCAAAAGCTCAACTGTTTGAAAATGTTGGTTCACCTAAGCCAGTTTCTTCTGGGCACCAAGCC s mm3.chr9 115467803 70 - 124467299 AGTGGCAGCAAAGGCTCAACTCTTTGAAAATGCTGGGTCACCCAAGCCAGTTTCTTCTGGACGGTAGGTC s rn2.chr8 121802555 70 - 127756414 AGTGGCAGCAAAGGCTCAATTATTTGAAAATGCTGGGTCGCTCAAGCCAGTTTCTTCTGGACGGTATGTT a score=14320.000000 s hg15.chr22 14801458 70 + 49476972 AAGCCATGTACTCCTATAAAGGAGAGCACAG-CGTGAGCTTTCCTTCCCACAAAGAGTGATATTTTCCAGT s mm3.chr9 115473254 71 - 124467299 AAGCCATGTACTCCTGCAAAGCCGAGCACAGCCATGAGCTGTCCTTCCCCCAGGGGGCCATTTTTTCCAAT s rn2.chr8 121808105 71 - 127756414 AAGCCATGTACTCCTGCAAAGCAGAGCACAGCCATGAGCTGTCCTTTCCCCAGGGGGCGATCTTTTCCAAT a score=80009.000000 s hg15.chr22 14801528 516 + 49476972 GTGGACCCATCAGTGGAACCAGGATGGTTAAAGGCAGCTTATGAAGGCAAAACGGGACTAGTTGCAGAAAATTATGTTGTCTTCCTCTACTACTATTTAGTGGATGGCAGTATCTTCATGGTATCC--GGTAACAAATAATAAGTGCTATGATTTTATCTGACACAGATACAAGGGGATCAGCCCACTAAGTGAAAACAGTCAATTTCTATCAAGTTCTTCACCAGCAGACTATGTAGCTCCTTATTAATGGAAAAAAAGGTTTAAATGGTTG-------GCCATTCTTTTTTGGTTGGTTTCTTATTTTAAAATTTCTTGCTTCTGAAAAATTTAT---------------------------------------------------TTTTGGATAATACGTAACTCTCCAGAATGTCTCTTCCATAGCAATTGTAGAGTTTCAAATACTTTATTAAGTACTATATCCCATAAACTTGGAAACCAGAAATCTGCTGTATGGATTTTGAGATGTGTCCTTTACTGCCTGGCATTCTCTAAGGATCTCTGAAACTGCTAC-TTAAAAATGTTACTGAA s mm3.chr9 115473805 508 - 124467299 GTACACCCGTCGGTGGAGCCAGGGTGGCTAAAGGCAACTTATGAAGGCAGAACAGGACTAGTCCCTGAAAACTACGTTGTCTTCCTCTAATAGTA-TTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACACATAATACGTGCTATAATTTTATCTGACACAGATAT-GAGGGACCAG-CCACTAAAAGAAA--CATCTATGTGTCTCAAGTTTTTCACCAGCAGACTTTGTAGCTCCCA--TGACGGAAAGAGAAACATAAATATTTGCATCATAGCCGTTC--TTTTGGCTGTTTTCTTACTTTTAAAAT--ATGCTTG-------TTTAT---------------------------------------------------TTTTGAATAAGAAGTGATTTTCAACAGTCTGCTCTCTCTAGCAGTTGCAGAATCTTAGATCCTGAGCTCAATTCTGCATACCCAAAATATGGAAGTCAGAAATCTGCTGTACCCATGTTAAGATCCGTTCCTTATTGCCTGATAGTCTCTGGGGAACCTTGAAATCATTACTTTAAAAATGTAATTTAA s rn2.chr8 121808644 561 - 127756414 GTACATCCATCAGTGGAGCCGGGGTGGCTAAAGGCGACTTATGAAGGCAGAACAGGACTAGTCCCTGAAAACTACGTTGTCTTCCTCTAATAGTA-TTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACACATAATCAGTGCTATAATTTTATCTGACACAGATAT-GGGGGACCAG-CCACTAAAAGAAA--CATCTATGTGTCTCAAGTTTTTCACCAGCAGACTATGTAGCTCCTACTTGATGGAAAGAGAAACACACATATTTGCATCATAGCTATTC--TTTTTGCTGTTTTCTTACTTTTAAGAT--ATGCTtc-------tctctctccctgtctctctctctccctctctcccactctccctctctccctctccctttctcAGAGGAAGTGATTTGTGACAGAGTCTGCTTGCTAGCAGTTGCAGAATCCTAGATACCAAACCCAATCCTGCATACCCCAAATTTGGAAGTCAGAAATCTGCTCTGCCCATGTTAAAATCTGTTCCTTATTGCCTGATAGTCTCTGGGGAACCTTGAAATCATTACtttaaaattgtaatttaa a score=101932.000000 s hg15.chr22 14802087 1230 + 49476972 TGTTCTTGACACCTTACATATTACTTCAGAG--TTCCCCACTGTGCAGACTCTCAGGTATTAACTGTATAAAAC----------TCTTTACATGCTATTATAATCTGCAATCTCAATCTCTTCTACTTTAAATTAATGTTTCTAGAATAGGTTAAATACACA---TATACACACACAACTATGCCTGAGAAAAGTTATGCTTTTACAAATAAAAAGA--ATAGATTAGCATTAACAAGTAGGGTGAATAACAGTAGGCAGAGTCAGA---ATCAGAAATAAATACCAGTGAATCAAAATAAAAGAATGAAAAATATTCTGTATTAAAAATTATCAATGTAATGTAAAAGTCTGATAAAAGATTA-----TTCTTTTTCTTTTACCTCTGACTGTTGACCTCTGTACACTGTAATAAGGTGTTGCTGGATGGAACTTCTTGATCTAGGT----CCTTGGTGACCTTAGTAGT----AATAACAGCATTGCTGGCACCCTAATTACCCTCTGCTGAAACAGAAGGTAGTTTAT-CAATGTACCAATCCCTTAGTCTATA---CTTGGTTTAAACACGCT-TGCCATCATC---TGGTATCCTGCTAGATTAGAACCTCTTAAAAGCAAATTGGTTTTCTTTCAAAGACCAACCTGACTCCAAAGACAGATACGGAATCCTGCTT--CTTCTGCTGCATAAAGAAATCTCAAC-CTTCATTTTACTTGAACACAGACCGAAGTGTTCCTACTTCTGCGTTGTCTATGAGCTAGTTCTATGGATGTTCCACTCAGATTTAAAGCTTTTTATTGCACAGGACGTGGATATGAAGCCTAACTCTTGTATCTGATGGCAAGGCATATGT--TGTAGCCACAGTACTGG-CTATGGTCCCTTTGCTGAAAGAAGCTACAGAAGCACTGATTCAAGCTGTGTTTGTGCTAGAAGTTTTAATCTTGTAGATTTGTGAGGATGGCTCTTTTTCCTTCATAATAGATTACATGTACAAGCAAGTCAGGGCCATATACTGGAGACAGGCTAAAGCTGCTTTTCCCTTCAAGAAAGTTTCCTACAGATAAGGTATTTATGAGCATTGAGAAAGTCAGGACGTGTACTCTAAATCACACAGAGTG----TTAATTCCACAGGAAGGCAATGCCAGACATTGGAAGAGGATCACATTCAACTTCTAATAGTAGTTCAATAAC----AAAACCTTAGCTTTTCAGAAAAAATGTGAAGAAATGGAAATCTGAATCATAATATAAACTTTCT-----CTACAAGATAC s mm3.chr9 115475514 1158 - 124467299 TGGCCTTGTTATCTAGCTGACGTCTTCAATGTTTTCTCTCGTTCACTGACACTCAGGTGTC-----TAAAGAGC-------------TTACATG---TTATAGCCTAGCGTCTCAGTCCATTCTTCACTACATCAGAATTTCTAGAG-----AAAATAAGCAGAGTATACATACAACGTTGTGCATCGATGTATCTATGATTTTAAATGAAATAAGATAATGGATTAGAATTAATGTGTAGA--GAGTAACAGTTGACAGA--CAGATGCATCCAGAAATTACAGCAGTGAACTGAATGCATTGGCTG----------TCTCATAAAGAC-AATGACATGATAGGTAA--CTGATAAAAGTTTGGCTCCTTCATTTTCTTT--CCTCCTTATTCTAGTCCTTGTACACTACAGTGAGGTTTTGCT-----AAGCTCCTTGGTCAAGGTAAA-GCCTGATGTCTTTTAGTATACTAACTAATAACATTCCTG--TCTCTGGTAACCATTTTCTGAGACAAAAGGTAGCTTTTATAACGCACCAGTAGCCT-GACTACATGGCTTTCTGTTGAAGCCCT--------------TCGCATAGTGTTAGATCAGAACCCCTGAAGAG-AAGCTGGTTTGCTCTCAAAGACCAGCTTGAC----AGTAAAGATTCAATATCTTCGTCCACTGCTGATGCACAGAGAAATCCCAACTTTTCCTTTTATTTTAATGTAGATCCCAGCATTCCTGACTCCCAGTTGTCTGTGAGCTAAACCAACAGATGCTTACTGGGGACTTAGAGCTTAGT-------AGGACATGGGTATGAAATCCAGCTCTGCTTTCT--------GATCTATTCTGTGT-----CATTATTTG-TTGAAGTTCCTTCCCTGAAACAAGACATAAACATGCTGGTTCATGTTGCACTTGTGCTTG-CGATTTAATCTTTCAGAAT--------------TTTTTTCTTCAT-GTTAATTATATATGTAAGGAAACCATGATGATATATGGGAGAGAGGCTAAGGGTACTTTCTTCCTGAATTAAGTACCCTAAAGTTAAAGTATGCAGGAGCACTACAGAAATGAAGATTTGTGCTCTGGAGTGCATGGAAGG----TGTGCTGGACAGGAGAGCATTGA-GGTGATGG-AAGAGTCACGT-CTCAAACTGTGATACTA--TTGATGACATGAAGAACCTTACCTGT---GAGACAGTGGGATGAT----------GAACTGTCATATGTACACTCTGAAAGCTACAATATAC s rn2.chr8 121810339 1180 - 127756414 TGGCCTTGCTATCTAACTGACTTCTTCAACCTTTTCTCTACTTCATAGACACGCAGGTGTC-----TAAAGAGCTACGAAGCTATTGTTGTGTG---GTATAGGCTATAGTCTTGGTTTATTCTGCATTACATCAGCACTTCTAGAG-----AAAATAAGCAGAGTATTCACACAGCGCTATGCCTCAGTGCATTTATGCTTTTAAATAAGTTAAGAT-ATGGATTAGAATTAACGAGTAGA--GAGTAACACTTGACAAA--CAGATGTATCCAAAAATAACACCAGTGAACTGAAGGCCATGAGTGCAAAGCA---TCTCACAAAGAT--TTGACCTGAGAGGAAA--TCGATGAAATCTTGGCTCTTTCTCTTTCTTT--CCTCTGGATTCTAGTCTCTGTACACTGCAGTGAGGTATTGTT-----AAACCCTTTGGTCAAGGTGGGTATCTGGTGGTTTTTAGTAT----ACAAATGGCATTGCTG--CCTCTGGTCACCGTTTTCTGGGACTGAAAGTAGCCTTTGTAATGCACCAGTTGCCT-CTCTGCAGGGCTTTCTGTTGAAGCCCTTTGTCATCAACCCCTTGCAACCTGTTAGATCAGCACCCCTGCAGGG-AAGCTGGTTTGCTCTCCAAGACCAACTTGGC----AGTAAGTATCCAATATCTTTCTCCACTGCTGCTGCACAGAGAAATCCCAACTTTTCATTTTATTTTAATGTAGACCCTAACATTCCTGCCTCCCAAT----TGTGAGCTAAACCCATGGATGCTC-------ACTTAGAGCTTTGT-------AGGACTAGGTTATGAAACACAGCTTTCCTTTCTGCTGGTGAGATCTACTC--TGT-----CAGTATGTGTTTGAGGCTCCTTCCCTGAAACAAGACACAAACATGCTGGTTCATGTTGCACTTGCGC---------------TTTAAGAG--------------TTCTTTCTTTGT-GTTGATTGCATATGTGAGGAAACCATGAGGATATATGGGAGAAAGGTTAAGGGCGCTTTC-CCCTGAAGTAAGTATCCTGCAGATGAGGCATGCAAGAGCACTGCAGAGATGAAGATGTGTGCTCTGGAGTGCCCGGAAGGAAGCTGTGCAGGGCAGGAGAGCATCGCTGGTGATGGAAAGAGTCCCGC-TCCAAACTGTGATGCTA--TCAACTTCATGAAGAACCTGACCTGCTCAGGGACAGTGAGATGTG-------TTAGAACTGTCATACCCACACTCTGAATGCTACAGTATGC a score=10870.000000 s hg15.chr22 14804891 52 + 49476972 TGATCACTTCATTTCAGGAGGTAGACTTTTCCTCTTAAAGCTTTTCAGATTT s mm3.chr12 64672098 52 + 114462600 TAGTAATTTCATTTCTCAAAATAGAATTTTCCTCTTGAAGCTTTTCAGATTC s rn2.chr6 87692197 52 + 146362310 TAGTAATTTCATTTCTCAAAATAGAATTTTCCTCTTGAAGCTTTTCAGATTC a score=18409.000000 s hg15.chr22 14804943 116 + 49476972 TTATCCCAAGGGTTTGG-CTTTTTATGCATCTCAATACGTGTAATTTGCAGTTAATACATCAATGCCTTCTGCTCTTGTTACTTCTCTCCTTAAAACAGTACATCTTTTTGATTAAc s mm3.chr12 64673401 117 + 114462600 TTACCTCAGGAGTTCAACCTTCCTCTGCATCTCCCCGCACGTGATCTGCAGGTCCTGCATCATTGCCTTCAGCTCCTCCTCCTTCTGCCCTTGAGAAGGGGCGTCTTTTTGCCTAAC s rn2.chr6 87693510 117 + 146362310 TTACCTCAGAAGTTCAACCTTCCTCTGCATCTCACCGCACGTGATCTGCAAGTCGTGCATCACGGCCTTCAGCTCTTCCTCCTCCTCTCCTTGAGAAGGTGCGTCTTTTTGCTTAGC a score=15307.000000 s hg15.chr22 14805360 118 + 49476972 tgtgtATTATTATTCTATAATATGGT--TTACATATAACTTTAGACATACACTCTTCCAGCGTCTAGTTGAATTAAAGTAGTTTTTCATGGGGTTTAATTTCCAGTTTACTCAAAAGGGC s mm3.chr12 64673780 119 + 114462600 TGTGTA-CACTCTTCTATGATGTGGTGCATGCTCACGACCTTGGGCGTACACTCTTTCGGAGTCTGACGGAGTTCAAGCATCTTTTCATCCGAGGCGACCTCCAGGTTTTCTGAAGGGGC s rn2.chr6 87693889 119 + 146362310 TGTCTA-CACTCTTCTATGATATGGTGCCTGCTCATGACCTCGGGTGTACACTCTTCTTCGgtctgatggagttcaagcatcttttcatcagaggtgacctccagattctctgaaggacc a score=111172.000000 s hg15.chr22 14806140 1352 + 49476972 -------------CTGATACAATATTCAAGAA---TATGTTTT--ATAACAATACTAAGTCAATTTAGAAATGCATTTTAGTGTGATATAAAATCCTTAACTTTTCTCCTACACTGACATTATGTATGATTTTGTTATTATTTTACAAGCACTTAA-AAATTCTCTATTTTACATAAGGTTTATATTAGATATAATTTTGTGAGGAAAATAAAAGTTCGGTTTTCTATTTGCATTGTGCTAATTCAGACTGCACTTGGTTCTTCATGCACACTG-TATAAGCTAAAGTTTAGACAAATT-----ATTGTAAAAACTGATACACATATAGACCATTATAG---TGTTATTTTT------AAAAGCACAAGAAACTACTTTAAAAGA---------------TCACAAGGAGATTACAGCAAATGAATCTTCATATTCATTACCTCAATG--AAATATAATTTAACACTAGTTTCGA------TTTTTTTCCAAAAGACTAATTTTCAAGTGAAAGCTTTAGATCTTTGAAAGTAATAGAATTAAAGATAAAGATAGAAAAGATACATAATTCATTTCAGCAGTTTTCTGAGAAATACCATATTTTCCAAAATATATATGTTCTTATAAGAAATGGATTCTCTTT----AGGCTATTAGATTATCAATCTTCTACAATAGGCCAATT----TTCAAAGCACTAGGCCTATGTTCACTCAACCAGTCTCATGAAGCAAAA----------------------------------------------------------------ACTGAATTAAGATATTGCATTTATTTTAGTCCACATATTTATCAAGCAAAGAAACTATGGAACAAAGACTCTTTCTTGCTGAAGTTCTTGGGATTTCCATGGTGCTTAATGCAT----------------------------------------------------------------ATTTTTTTAAATTGTGAGATCAAAGAACACAAATCTTGAGCCAT-TGTGTATGTTACCTGGGTAAAAAAAATTAA----ACTTGATCTTTTCAAA----------------TATCTAATGGAATCCCAGGCATTGTGATTTATTAAAATATGAAGTTAAATATTTAAGAG--AAAATTA----ATCAC-AATGAAATGAGTTGA-CTTTCTAAGAAAAGCAAGTATGTAATTAAGGAATCATTAGCAGACACTCTCAAAACAATTACAACATTTAAAAGCAATCAACATTACAACTCTTAGGTTGTGTTTTAAATTCCTCATAACCTAAACATATATATTCACTAATTATTCACTTGCCAATATGA---ACAATGAAAGATGAGTTAGAAAAACCAGAGGCT-TTAGTTCAAAAATGACAATCTTTGGTA--CTGCAGC-AAGGAAA----TAACTAGCTGGTGAAATTGATGACTCCACCTGGCTTTATCTCGGTAATGTTCTGAAATACATGCAATGAACAACTTGACATTGTTTGATGTTCTTAATTCTTTACAGCCATCTCTATTGGTAGTCTTAATAGATCAGATCAATCAGAAATGATCA s mm3.chr8 36792596 1313 + 128923138 -------------CTGATAGAGTGTTTAGAAG---TACATTTCCAATGGCATTGCTAACTGTGTTAGGTACCACGAGTACCTCTGT----GAAAGCTTGATGCTTCTTCT-CTCCCACATCATCTAGGACTTTGTTGTTAATTCAAGCAAATTTAAGAAATACTTCCCATCATGTAAGATTTATTTTAGAGGTAATTGTGTGAACAAAATGAAAGCTCTATTTTGGATTTGCATTGTGCTGACTCAGGCTGTCCTTGAGTCAGCACACCTGCTGATGTAAATTAAA-TTTACCCAAATTCACTCGCTGCACAAACCAATATAAATGTGGGACATTGTACTATTATTATTCTTTCCTTCAGCAG--AAAGAGATCACATTCAAAGA-AAGCTGTAGATTCTTTAAAAAAAAA--AAAAAGCTCAAATCTTTGTATTCATTATCTCAGGTTAAAATATGACTTACTATTAGTTTCAAAGTGG-TTTGTTACCAAAAGATTAA-TTTCATGCAAAAGCTTGAGATACTTGAAATGAATGGTATTAAGGATAGAGATAGGAAAGATACAAAATTCACTGTAGCATGTTTCTAAGAAATTC---ATTTTCCTGGAAGT-TATATTT-TATAA-AAATGTACTAATTTAAAGTAAAGTACAAGAATAATAAT---CTGTATTAGGTCATGTAGGATGCAGGACACTATTACTGG----ACTAAACCAGAATTACTAAACAAGA----------------------------------------------------------------TCTCtttttaattattaaatt--ttttaG-----------------------------------------------------AGCTTTTGGGCTTCCCATGATCTTTAGCAC------------------------------------------------------------------ATTATTATTATTCAAGAAGT-AAATAATATAAATCTTGAGACATCTAAATATTTAGCC--AGTAATATAAATTAA-TATATTCAAACGTTTAAAAAGGATTTGCAGAAACATTTAAAAAGGAAATTCAG---ATATAGTTTAGTGAGATACCAGGT--AATATTGAAGAG--TGTATTAACAAATCACTAATGAAATAAGTAGAGTTTTCAAAGAAAATTGGCATCCTATTGAAGGAGTCATCCACAGAGAC-CTAAAAAGCATTAAACCACTTGGAAAGTCACAATACT----TTATTA-----------AAACTCCCTATACC---AATA-ATACACCCAGCAACT-TGCATTTGCTCATATGATTCCCAATGCAAGATGAGATAGAAAAACAAGAATTAATTAATTCAG----GGCAACATTTGGTATTCTACAACTAAGGCATTAAATAAATGGCT-TTGGAAAAGAACATACTACCTGGC-ACATCGCAGCAATGCTTTGAAACACATATAGTGAAATAGTCAAAATTATGTGTTCTTATTAA-TCCTTTTAGTCATTTGTGTGGAAAGAATTAACAGATGAG------CAGAATTAATCA s rn2.chr16 30244056 1423 - 84226546 TCAGTGATTATCTCTGATACAGTGTTCAGAAGAGGCACATTTCCAATGGCAGTGCT----GTATTGGGAACTGTGAGTCCGTCTTTTA-GGAAAGCTTACTGCTTCTTCT-CTCCCACATTATCTAGAACTTTGTTGTTAATTCAAACACATTTAAGAAATACTTCCCATCACGGAAAATTTATTTTAGAGGTAATTGTATGAACAAAATGAAAGCTTTATTTTTGATTTGCATTTTGCTGACTCAGGCTGCCCTTGAGTCAGCACACCTGCTGATGTAAATTAAA-TTCAGACAAATTCACTCACTGGACAAACTAATATAAATGTGGGTCATTGTGC---TATTATGTTTTTCTTCAGTAG--AAAGGGAACACTTTCAAAGATAAACTGCAGATTGT---------------Aatacatatatatatatatatat------------atataAAATTTATCATCAGTTTCAAAGTGGTTTTGTTACCAAAATATTAA-TTTCATGCAAAAGCTTGAGATATTTGAAATTAATGGCATTAAGGACAGAGATAGGAAAGATACAAAATTCACTGCAGCATGTTTCTAAGAAATAC---ATTTTCCTGGAAAT-TATGTTTACATAA-AAATGTACCTACTTA----AAAGTACAAGAATAATAAT----TGTATTAAGTCAAGTAGGAAGCAAGTTACCACACCTGG----ACTAAACCAGACTTACTAAACAAGAACTTTGTTCAACTATTTCAATGATGTATTCTAGAGCATAGGCTATGAACCTACAAAATCAAGACTCCCTTTTAACTTATGAAATT-GTTTTAG-----------------------------------------------------AGCTTTTGGTCTTCCCATGATATTTAACACATCATCGTCattgttgttgtcatcattatcatcatcatcatcattgttgttgttgctgttattgttattactattatt----aAAT-AAATAATATACATCTTAAGCCATTTAAATAGTTTGCC--AGTATTATAAATTAATTATATTCAAACACTTGAAA--GAGTCCCAG-AACATTTGAGAAAGAAATCCAG---CTATAATTTAGTGAAATGCCAGGT--AATATTGAAGGGTATATATTAATAGATCACTAAGGAAATAAGTGGATTTTTCAAAGAAAATTGAGAACCTCTTTAGGAAGTCATTCACAGAGAC-CTGAAAGCCATTAAACCACTTGTAAAGTCACAGGATC--AACTCTTA-----------AAACTCCCTATACT---AATA-AAACACCCAGCAACT-TGGATTTGCTCACTTGATTCCCAATGCAAGATGATCTAGAAAAATAAGAATTTATTAATTCAG----GGCAACGTTTGGTATTCTGGAATTAAGGTGT----TAAGTGGCT-TTGGCAATGAACATATGGCCTGAC-ACATCTTGGCAATGCTTTGAAACACATATAGTGAAACATTCAACATTATTTGATCTTATTAA-TCCTTATAGTCATTTGTGTGGAAAAAATTAACAGACAAG------CAGAATTAATCA a score=18861.000000 s hg15.chr22 14807507 271 + 49476972 ATCACTTCACATGACTTATCTGGAAAATGTGCTTGTACTTACTTGCACCATCTCAAGTTCCAAGAGCCAAAAACATACACATGCTCATGGAGGAGAATTTCCTTTCTGATTTTAGAACAGTCTGAAAGGGTGTGAAAAAATGAAAAAAGAAGGGGGAGCTTACAAATAACAAAAATGTATATCCAAATGAAAGTTAGAATGTCTATGGAACTAGTAGTAGTAACAACAGTAGACAAAAGATAGGATGTAGATGTTAAGAAGATGTCTACAA s mm3.chr8 36794316 228 + 128923138 ATCACTTTACAAGACACATATGAAATAT-TATTCCCATTCTTAAGCACATTCTTAATTTCTGAGAGCCAAA---ATGAAAATTCTCTTGGAGGCAAATTTCTT-----CTTTTAGAATAGTTTATAAGTAGGT-TGCAAATGAAGAAAGAAA---------ACTAGTACC-AATATGTTCATTTCAATGGGAGGTGCAATCTCTATGACACTAAT---------------------AAGCTAGA--AAATCTTCCAAGCAGTGTAATACAa s rn2.chr16 30245884 223 - 84226546 ATCACTTTACAAGACACATATGAAATAT-TATTCCCACTCTTAAGCATTTTCTTAATTTCTGAGAGTCAAA---GTGAAAATTCTCTTTCAGGCAAATTTCTT-----ATTTTAGGAGAGTCTATAAGTGGGA-AGAAAAT---GAAAGGAG---------ACAAGTGAC-AATATGTTCATTTCAAGGGGAATAACAATCTC--TGACACTGAC---------------------AAGTTAGA--GCAGCACACAAGGAGTACAATACAG a score=11544.000000 s hg15.chr22 14807788 186 + 49476972 AGACTCCAAATGCTCTTGCTACTAAAATGCAGATTCAAGGTTTACCATCTGTAATATTCTGCTGCCATGTAC-----ATCTATGGCCACTAGTACTGTCTAAAAGGAGGATATATA-TTAAGAAATCATCAAAAAGGACTGCATAGCAGAAACTTCTGATATCAAGGGATCAACTTAACTACAATTATATAC s mm3.chr8 36795095 143 + 128923138 AGA--------------------AAAATGTAGACTGGGGATTCACTAGTGGTAATGTTTGGCCAAGAAGCACTTAGTGTGCATGGACACTGGAACTGTCTACAGTAAAGTCACACA-TT--------------------TGTAT-------GTTCCTTTTATTAGAGGAT-AACCTAATAGCAATTATTTGA s rn2.chr16 30246112 144 - 84226546 AGA--------------------GAAATGTAGACTCAGGATCCACTAGCTGTAATGTTTGGCTGACATGCACTTAGTGTACAAGGACACTGGTGCTGTCTACAGTGAAGGCACATGTTT--------------------TTTGT-------TTTCCTGATATTACAGAAA-AAtctaacagcaattatttga a score=10931.000000 s hg15.chr22 14807974 131 + 49476972 AGGTGCCAATTTCCTCTGGAGTAAACTACCACACTGGGCCTCATGTACCAGTTAGATAATCCAAGTCAGCCTTTAT------TGCATAACCTATCTAAAAGATTGGACTCTACATTTTGGCTCTGCAGAACTGAGAG s mm3.chr8 36795238 128 + 128923138 AAGTTCCAATTTCCTCTAGAGTAAACTGTCCCT-TGGGCTCCTAGAATCAGTTATAAGACCTAGAGCGTCTTTAACATTCTACCCCTAAACTCTC-----AACTAGTGTCT---TCTTACATTTACAGAAATGAGAA s rn2.chr16 30247524 125 - 84226546 AAGTTCCGCTTTACTCTAGAATAATCTGTCTCA-TGGGATCCTACAGTCAGTTATAAGATCTAAAGCATCTTTTCCATTCTATTCATAAACTCTC-----AACTAGAGTCT---TT---CATATACAGAACTGAAAA a score=2067.000000 s hg15.chr22 14808242 71 + 49476972 AAATACAATCATAACCACAAGAACAACAGTAATTCAAATTTTCTCACTTCATAGATGTTCTTACAATGCTT s mm3.chr9 39924306 71 + 124467299 AGATGTATACACTGCCACAATTGCATCAGTAATTCAAGATTGTTCTCTGGAAAGATGTTGGCATACTGTTT a score=889.000000 s hg15.chr22 14808313 58 + 49476972 TATTGGT------ATCTTG--TAGGTGCTCTCCCCAAGCCTCAGGTG--TTATTCCACGATCT--------CAGTT s mm3.chr8 36795553 75 + 128923138 TGCTCATCAGGAAACTTAGTTTTGCTTCTTCATCCAGCCTGC-ATCAACCTGCTGAACCATCTGATTGCTGCAGGt s rn2.chr16 30247915 76 - 84226546 TGCTTATCAGTACATTTAGCTTTGCTTCTTCACCCAGTCTTCCAGCAACCTGCTGAACATTCTgactgcagtaagt a score=29096.000000 s hg15.chr22 14808396 270 + 49476972 CTC---CTCTGTTCAATGTCTGCCATCCT-----TGTC---------------------------------------------TTTTTGGCCTCTGACTCTTCCCTATACTACTGTCTATGCACTTGAGATCTTCA-CTGATATAGCTTGGCTCTGTATTTATTGATAAGA------ATATCT----------------CTTTTCTCT-----TAGACTAGGCATGGCCAAAAGGTTAATCTGGATTCAAAGATTAATGACAATGACCACTCAGTTTTTATTCAAGATCAATTTTATTTGTTGTAAAAACAA--ACATGGGTTATGTTCCAGACAAACAGATA--TAAGTGAGTA s mm3.chr8 36796887 340 + 128923138 CTCAGGCTCAGATTTACTTCCAACATCATATTTATGTCCATGTGGGTGTTTACCTGTGTAGCTCTTTCTTCATGTGCTGACAATTTTTGGAGTTTGCCTCTTCCCTTTACTACC-TATATTC-CTTTAGATCTAAACTTGCAACATTT----CCTGTATTTCTTGATAAGCAAGGCTATATTTCCTGATGTTACTTGGCCTCTCCTCTTATACATGACTAGAT----CCAGATCACTAATCTAAGTTCAAACATTAAAGACAATGACCACTGAAGTTTCATTCAAGGTTAATTTTGTTTGTTCTACAAACCAATAAATAGGCTTTATTAC-----AATGGATATTTGAGTGAGCA s rn2.chr16 30249094 331 - 84226546 TGTAGGCTCAGATTTACTTCCAACGTCATATTTATTTCTGTGTAGTTGTTTACCTATGTAATTCTTTCTTCATGTGCTAACAATTTGGGGGGTTTGCCTCGTCCCTTTACTATC-TATACTCTCTTTAGATCCAAA-TTGCAACATTT----CCTGTATTTCTTGATGAGTCAGACTATATTTCCTGATGTTACTTTGTCTCTCCTCT-----ATGACTAGAT----CGGGAAGACTAATCTAGGTTCAAAGATTAAAGACAATGACCAATGAAGTTTTATTCAAGGTTAAATTTATTTGTTCTACAAAC----AAATAAGCTGTGCTAC-----AATTAATAGTTGAGTGATTA a score=37007.000000 s hg15.chr22 14809364 597 + 49476972 TAAAGATTATTGCTAAAATACACACCATA-CAACAAACCAACCCATT------TCCCACAAATCTTACTGTCTGACTTCTCACAAAATACATAATGACTTTTATTGTGTCTCTTCCTTCTGTGTTTCTCTTTC-CTAACTGAACTGTTCTTTATCCATGCCTTCTT-----CCTATCCTGACATATTTTAAA-ACCTTTAGCATTTCTGCCTATAATATTTGGGTTTTCTCCTTTTCCTATCTTTAT-----TTAATAAGTCCCATACAAATATTTTCCCTGTAATCACAA----TGTTTTCTTTTCACTTTGCCCAAGAACTGAGTTATGAGTTCCAAATTTGGATAAACTCTACATTGGCTAAGTTTTAGTCATTTGCATTGCTAAGAAAGATGGCAATTCAACATGCTGAAGATGACTTCCTCCCTTATAAAGGGGCTAACACAGAGGGCAATACTGTTCATGCCTCTGAGTCTTGATCACAAGAATTGCTTTAGGCAATTACAATCATGTCTCCTCTGACACATCATATTATTCAAGTGAGACAGAGAAAGAATATGTCCTATGTCACACAGCTGGGTGGTGAC--AGCTGCTTTAGCATCAGCACACTGCGTTCCCT s mm3.chr6 1400545 495 - 149950539 taaagattatttaaaataattatatCACAGAAACAAAACAACTCATTGTCCAATCCAGTATGGTTTAGTTTCT---TCCAAACAAAATGTGTATTGATTTTTTTTTTATTGTTTAC-----TGTTTCTCTTTTATTCACCAAACCTTGATTTATCCAGGC---------------------------------ACC--TAGAATTTCTTCTTGTG-----------TTTTTCTTCTCCTATCTATAC-----TGGGAAAAATTCACACAGATGGTTTTTACACAATCACAA----TGCTTCCTT---------------ATGCGGGTGA-GAG-----AAGGTAGGTGAGCCCTACATCCTTTGTGTTGCTGTTGCTTTATGTGCAAGCCCTGGAAGT-GCTGGATGTGTCGGAAA-GGCCTCCTGCCTCAGAAAGGGGCT-GCTCAGAGGCCAGTCCTATTCCTG--TTTGGACTGTGCTTCCAGGA------------------------GTCTCCTCCTGTTGAATGTGTTGTGGAGGT--------AACAGGAGGTGTGCTTTAT--CACTGTTGGGTGGTGACAGAGCTGCCTTTGC-TTGGCACCTTG---TCCCT s rn2.chr4 644470 533 - 183307734 GAAAGACTATTTTAAAAAATTATATCACAGAAACAGAAGAACTCACTGTCTGATCCAGTATGACTTAGTTTCT---TCCAAACAAAATGCATATTGGTTTTTTTTTT-CTGTTTCC-----TGTTTCTCTTTTATCCACCAAACCTTGCTTTATCCAGGCATTCCTAACCCTTCAACCTTACCTATCTGAAGGACC--TAGAATTTCTTCTTACG-----------TTTTTCTTCTCCCATCTATATGAGGGCGTGAGGTGCTCACACAGATGTTTTCCACCCTGTCACAGTGCCTGCCTCCTC---------------AGGTGGGTGA-GAG-----AAGGCAGGTGAGCCACACGGCCTTCCTGTTGCTGATGTTTTCTGTATTAGTCCAGGGAGT-GCTGGATGTATCAGAAA-GGCCTTCCACCTCACAAAGGGGCT-GCTCAGAGGCCCGTCCTGTTCCTG--TTTATACTGTGATTCCAGGG------------------------ATCTCTTCTGGCCGAACATGTCGTGGAGGT-----------AGGAGATGTGCTTTGT--GTCTGTTGGGCGGTGACAGAGCTGGCTTTGC-TTGGCACCTTG---TCCCT a score=443.000000 s hg15.chr22 14809961 27 + 49476972 CTGATTTCTTCATTCATCTCTAAGTAG s mm3.chr6 1401040 22 - 149950539 CTGTTTTTT---TTCATTGCT--GTAG a score=8594.000000 s hg15.chr22 14809988 74 + 49476972 CAGTAAATCCGGTCCTGAATActgactttgacactcagctttctccacatccttcct----------------gtcactgcctttgagac s mm3.chr6 1406208 74 - 149950539 CAGTGAACCTAGTTTGTAGTAGGGGCTGTGAGA--TGGCTTTCTGTACTTCTTTCCTTG--------------GTCACTTCCTGTTAGAC s rn2.chr4 645010 88 - 183307734 CAGTGAACCTATTCTGTAGTAGGAGCTGGGAGG--TGGCTTTCTGTACTTCCTTCCTTGATCACTTCCTGTTAGTCACTTCCTGTTAGAC a score=13505.000000 s hg15.chr22 14810062 164 + 49476972 -------------------------------------------------tactt--cagattcttcccttagcttctatttctccatttgtaaaatgggttgatgagggtatcttcatcagtagctgtgacaataaaaatgggatcatcatgcatcctcct-------tagccccatgagtaagctcccagtaagtgaggttgtcatCATTACTGGATATTT------- s mm3.chr6 1406407 193 - 149950539 ttttgaatctctattgtgacccacaggttg----agaactattgtgTGAGACTGTGCAGATTCTGCCCTTAGCTTCCCTTT-----------AAATG-------TCAGAGATGTTAGCCATGAAGCG--AAGATGGAAATGGGACCATCCTTAGTTCTTGCCACAGGATGGCCACAC-AACAAG----CAGTGAGTGAGGCTGGTGTCATCATtgtgtcttt------- s rn2.chr4 645227 204 - 183307734 ttgtaaatctttattgtgatccacaggttggttgaggaccactgtgtaagACTG--CAGATTTTGCCCTTAGCTTCCCTTT-----------AAATG-------GCAGAGATGTTAGCCCTCAAGCGTAAAGATGAAAATGGGACCATCAATAGTTCTTGCCACAGGATGGCCACAC-AACAAG----CAGTGAGTGAGGCTGGTGTCATCGTTGTGTCTTGAgtgtgt a score=73867.000000 s hg15.chr22 14810755 543 + 49476972 tggattttcgagtaggtgtgttcaatc-----tgTATATATGGGCCAGATTAAGTTGTTTCCTTTAATCCTTGGCTGAAGGAAGCACAGAAGACTTTGGGGCCTCAATCTCTCATATGCAGTGACATTCTCAAAGCCATTGACTCAGCTTCTCACCTGGGTTTCCTTCCAGTGAGCCACAGATAGAAGTCACAGGTGATGACAGGGGCCTGCTGGCTGATGGCATTCCAGTACTGGGTTGTGAAGTTGCTGGTGGTGAAATCAGCATATGGCCTCATCAAAGCTCTCTCAAATGGAATTGGAATTTCAAAGGTTGCCAAGACCTGGAATCCTGGGGGAAAAAAAGAGAGTAAGTGCTAGAGGAGAATAGGAAAATATATGCCCATCATAGTGGAAGGTATTTATAATGGGTCACAACAATAAAGACGAAGGATTTGCTGTGTAGAGTCAAGAATCAATTTCTGAGAACAAGGTAAAGATTTTTATGCTAGGCAAGTGGTTATCTGCAAAATGAAACAATGTGAATGGGTTAAGAATTGGACCATTTAT s mm3.chr6 1406672 499 - 149950539 tgcatttgtgtgaatgtgtatgcatt------tgtgtgtgtgtgACAGAGACATTTATCTTCTTTAATCCTCAGCTGCATAGAGGATTAAGGACTTTGGCTTC-----------CATGCACTGATAATATTAAAACCATTGCCTCAATTTCTCACCTGGGTTTCCTTCCAGTAAGCCTCAGATAGAAGTCATAGATGATGGCTGGGACCCGGTGGCTGACGGTGTTCCAATAATGGGTGGTGAAATTGCTGGTGGTGAAGTCAGCATTTGGCCTTCTGAAAGCACTCTCAAATGGGATCT---TTTCGATGGTCGCCAAGACCTGTAATCCT---GGAAC-AAAAAGAGGAAGTGCTA----AGTCTCAGAG-ATGTAAGTCGATCATCTT-CAAGCTATCTGCAGTG---CAGAATGACAGAC------TGTTTGCTGTATAGCATCAAGAATC--TTTCTGAGACCA---TGAAGATGTTTATG-----CAGGTAAACACCTGCACAGTTAAGCAATGTGACTGCACTAAGAATGGGtttgtttat s rn2.chr4 645515 504 - 183307734 tttgtgtgtgtgtgtgtgtgtgtgttcatgcatgtgtgtgCATGACAGAGACATTTTTTTTCTTTAATCCTCAGCTGCAGAGAGGATTAAGGACTTTGGGCTC-----------CATGCACTGATACTTGTAAAACCATTGCCCCAACTTCTCACCTGGGTTTCCTTCCAGTAAGCCTCAGATAGAAGTCATAGATGATGGCCGGAGCCCAGTGGCTGACGGTGTTCCAATACTGGGTAGTGAAATTGTTGGTGGTGAAGTCAGCATTTGGCCTTCTGAAAGCACTCTCAAATGGGATCT---TTTCGACGGTCGCCAAGACCTGTAATCCT---GGAACAAAAAAGAGGAAGTGCTA----CATCTCAGAGAATATAAGTCCATCATCCT-CAAGCTGTCTGCAGAA---CACAATGACAGAC----CGTGTTTGCTGTATAACATCAAGAATC--TTTCTGAGAGCA---TGAAGATTTCTATGCCTGCCAGGCAAACACCTGTACATTTAAGCAATGTGACTATACCAGGAATGG---------- a score=37329.000000 s hg15.chr22 14811298 706 + 49476972 TTGAAACATCTACTCTAAAACAAATTCTTGGGGAAACACATGTAGTCAATAAAAGGGGGTACTGTTCAGAAAAACATAAATCCACATTTAATTCTAAGGTTATCTAGTTTATTCTGAAAGCCCCAAGACAGAGGCTAGAAACTTTATTTTCCTGA----CTGGACCATTACTGTCA-GAACCATTTAGAAAG-----TTTCTTAACATTTTATTTGAATCTTTATTAAAAGTTTAACTAAAAAATTCTAAAGGCAAGATTTTCTTGGGTTAGCTTACTTTAAATATTTCTCCGGGAATATGTCAGACTCAATTGTCCACTCTGGTATCCAGGGTTTTATTCATAATAGTGTTTTTCTTTTTATATTAATACTTACATTAAGCTTAATTAAGAACATTTTACATACATTTGTGAATTCAGTAGTTCTTTCGAAAAGATACTCATTTGAATTCAATTCTATTTAAGGTATGTAGGTTTTTGCAAAGCATATGCCTAAGCTCATTATTCAATTATGATG------TCAGTTGTTATAGTAAAATGATTATTGCCCTACTTAAAAAAATGCCAGCTAAAAATCTATCTGAAAAACATA-ACTCCTCTTCAGAGAAGATTCTCAAGAATCATCTGGTCCATATTGATTTATACTTTAAAAAGATGGGGGTAAAAAAAAAAGTTATGTACAGGTTGATAGCATAAGAGATTCTgatctcaacactgacg s mm3.chr6 1407349 540 - 149950539 TTAAAACATTTACTCTCAAATAA----TTGAGGAAATTTCT-TATTCAACATGAGCACAGGCTATTGAAAACGATGTATATC--TGTTCAGTTCTGG------AGAGTCTACTCTGAAAGGCCTTCGACTGAGGCTGGGAGGATCCCTTGCAAAGTTTTTTGAA--AGTTTTATCAGGAAAGTTTTTGACAGTTGCTTTTCTTAAGGTTATAC----ATTCTTAACAGAATTTTGCATAAAAGTAT---AAAGATGGATTTCTTTGGG-TGGTTCACTT----------------AATGTACCA------------------------CAGAGAT---TTCATAAT--TGTCTTCattttta---tattatttagagtaattt-----------atttttaat--atttGTAGATATAATGGTCTCTTTGAAA--ACATTCATTTAAATTCAAT----TTTAACTTAATTGGATCTTTTCAGACAATGC-----AGTTAATTATTCAGTTATGATGAAGTTATCAGTTATTGTGGTAATTTGATTATTGCCATCTTTTAACAGATACCCCCAAGAAATCAACATGTCACATATACACATATGTT----------------------TTTGGTTAGCTTTAATTC-----------------------AAAGAGGAG-------------------------------------------AACG s rn2.chr4 646188 512 - 183307734 TGAAAACATTTACTGTCAAATAA----TTGAGGACATTTCT-TACCCACTATGAGGACAGGCGGTTCAAAAGGATGTATATC--TGTTCAATCCTGGGTTTTCAGA-TCTGTTCTGAAAGGCCTGCAGCAGAGGTTGGGAGGACCCCTTGCAAAG---------------CCATCAGGAAAGATCTTGGCTGTTGCTTTTCTTAAGGTTAAAT----GTTCTTAACAGAG-TTTGCATAAAAGAAT---AAAGATGGATTTCCTTGGG-TGGTTCACTT----------------AAGGTACCA------------------------CAGAGAT---TTTATAAT--TGTCTTCATTTTTA---TAATATTTAGAGTAGCTTATTTTAA----ATTTTTAAT--GTTTGTAGATATAATGGTCTCTTTGAGA--ATATTCATTTAAATTCAAT----TTTAACTTAATTGGATCTT--------------------------TTCAATTATGATGAAGTTATCAGTTATTGTGGTAATTTGATTATTGTTGTCTTTTAAAAGACACCCCCAAGAAATCAACATGTGAAAT----ACATCT-TT----------------------TTtggttagctttaactc-----------------------aaagaagag-------------------------------------------aaag a score=85152.000000 s hg15.chr22 14812048 1019 + 49476972 aggtgtaatagacattcaca-tttaacagctctaaaatgggcctcctgatacacccactgctaaccacccccttccc-aatacatacacaaacttgctatttcaccagtcttctacctctaaccaaatgctaattcaatt-------tgtttagtagttcagccaaaaactttggggctatccttgattcatctctttctttaacaacccacacacagttgaaca--aaatctatcagctctctgcttgaaaaatatccagaatcataatttccacctgctatctctctgatccaaacgactactgtagcctggaatgttacaatactgtcctaagtggtctctgccactacccctgtacccc--tagtcggacctccatgtagcagccagagtgattcttgtaaaatgtaactcagagtatattacaggaactttcccattcagaacccttcaatggaatctcttctcatttagag----gcaaagccat------ggtctgcaaggccttgcactctctgc-----------------------------------------------------atcctcactctctctgcccaccactctgacttcatctcttaccgccctccctctcagtgcttctggtgcagccatactggcctccttgctgtccttgaatatgattaaagaacttcagcacttactgtttcttcaacttggaatatttca---tccacaagtctctctgatttgccctctcacttct-ttcaggtctctactaagatgacaccttatcagagagagtttctttggccatcacatatcaaatagcagc---cttcccacaatactatttacttctttaatctgttttatttttctgcaatcactcaaccatatctaatgcatatttctcctttctaagatttaagtaccataacaaaattttgtctgttttgtttgaacctatacagtaccttgaaaagtggctgacaggtaatcagtgcctaataaacattttttgactaaacgaatCAATAAATATCTCAGCAACATACACTTACTTTCCTTTTCTGAAATCTATATCAATCCTTCAATCCTTCC s mm3.chr6 1408580 939 - 149950539 atatgtaatgaatattcaca-tttaacaactataaagttgacctcttgatattcctg------------cccttcccagacacg-------------ttttacagcatcttt------------aaatgataattctttcttttcctttttcagtaagtcaaccaaaaccactggagccat-cttgatcctcttccttgttcaacaactcttataacactgagcacca-aataattggccttccccttgaaaagtatccagcttcaccattttca-ctgttgtca--tagataggcgctctccctgtagcttgt-atattggaacagaatcaccactgggctctgc---------tgtggcccagtagtctgatctccatacagcagctagggtgaatctttgaaaatgctactcagaatgt--------ttcttcattttacagaacccct-gatagactc---tcttatttggagggaagaaaaacccttagtccagttggcaagaccttttagcatctgTATCTTCTCACACAGAGAGAAAATGTTATGGAAAATGGATAAG------GCCTGATCCTCACTCCTGC-ACCCATCCTTCTGGGTTCATTTTCTACCA-TTTACTTCTAGTTGCTGCTCA---AGACAAGATGTCCTTC---CTTTTCT------TGAGTAAAGAGCTACTGTTCTGATGGTTTCTTCAGCCTATGATACATCTGAAGCTAGCTGTCTC-CCGACAAG--CTCTCACTTAACCTCAGATCTCTGCTGAGATGTCACATTACAAGCT---GTTTCCTTGGCATCCACATAAGAAAT--Tacccttcttacctcag-----------------------tctatttttcttcaagcacttaaccatatctgatgtaT----------------------------------AATCTTGCC-------TTTGTCCCTACACAG-ACCTTGAGAAGTGGCTGGCAGGCAATTGGTGCTAAGTGAATACTTTTGAACT----GAATGAAAGAGTATCTCAGTAATGCATAGTAA-TTTCTATTTCCTAAGTCTATCTTGACTCTTTGGTTGTTTC s rn2.chr4 647562 910 - 183307734 aTAGGCAGTGAACCTTCACATTttaacagctataaaatcaacctcttgatataactg------------cccttcct-gacaca-------------ttgtacagcaccttt------------aaatgataattctttc-cccccctttccaggaagtcaaccaaaaccgtgagggtcat-cttgattctcttctttgttcaacaactcttacaacactgaacaccagaataattggcttttcccttgaaaagtgtccagcttcactatttgca-ctgttgtca-ttgggtaggagctgtctctgttgcttgt-gtattgggatagactcaccattggactctgccccggctcttgtgccccagtagtctgatctccagatagcagctagggttagtctttgaaaatgccacttagagtgt--------aacttcattttacagaacccAT-ATTAGACTC---TCTCCTTTGGAGGGAAGCAAACCCCTTAGTCCAGTTGGTAAGACCTTTTAGCATCCGTGTCTTCTCATACAGAAAAA---------GGAGAAGGCAtgcatgatctgcctggtcctcactcccgc-gctcatccttctgggttcattttccatca-tttacctctagtcgctgctca---agataagatagccttc---ttgtccttgaatatgagtaaagagctactgtactgatggtttcttcaggctatgagacacct---ttcagctgtctt-ctgaccag--cactcacttga-ctcagatctttgctgaggtgtcacatta-------------ccttggcctccccataagaaat--catc---cttacctcag-----------------------tctgtttttcttcaagcacttaaccatATCCTATGTAT----------------------------------AATCTTGCT-------TTTGTCCCTACACAG-A-----------GGCTGAC---------------AGTGAATATGTTTGAACT----GAATGAAAGAGTATCTCAGTAATGCATAATAACTTCCTATTTCTTAATTCTATCTTGACTCTTTAGTTGTTTC a score=4293.000000 s hg15.chr22 14814561 53 + 49476972 -aagcaataaaaagtct----tctcacaaa-aaattatgaatccagataatttAAAGGt s mm3.chr17 57054100 51 - 93529596 -AAGTAATAAGGGATCTAGTATCATGCAGA-GA------AAATCAGTTTATCTAACGGC s rn2.chr20 1646434 53 + 54947872 ACAGCAATAAGGGATCTAGTATCACACAGACAA------AAATCAGTCTACCTAATGGC a score=5568.000000 s hg15.chr22 14819470 57 + 49476972 GGTAGGTATCAAAAACATAACAATTCAAACTCTCTTTTAATTAAAGTTGGTTCTTGT s mm3.chr17 57054152 50 - 93529596 GTTTG-------AAATATACTTATTCAAATTAACTTTAAATTGATATTGGATCTTGT s rn2.chr20 1646488 50 + 54947872 GTTTG-------AAATGTACttattaaaattatctttaaatttatattGGACATTTT a score=3217.000000 s hg15.chr22 14819632 22 + 49476972 TTCCTC-CATTCTCTCTCTCTCT s mm3.chr11 63629040 22 - 122862689 TTCCTC-CCTTCTCTCTCTCTCT s rn2.chr10 65191225 23 - 106208427 ttcttcttcttcttcttcttcct a score=825.000000 s hg15.chr22 14819654 12 + 49476972 GTCTCTGTCTTt s mm3.chr11 63629062 12 - 122862689 ATAGCTGCTTTT s rn2.chr10 65191374 12 - 106208427 CCAGATGCTTTT a score=4656.000000 s hg15.chr22 14820202 54 + 49476972 GTGAAATACATTTTACTTAAATATTTGTATAATTTGAGTAGTTATTACCTTAAG s mm3.chr7 37779521 54 - 134401573 GTCAGATACTGTCCACTCAAATATTTAGATAATTTTATCACTTATCATTCTAAG s rn2.chr1 156387828 53 + 276301343 GACATATGGTATCAAGTGGAATGTTTAAATAATTTTAACACCTATCATTC-AGG a score=2019.000000 s hg15.chr22 14821206 33 + 49476972 TTTTCTAGTAATCTTGAATGTACATAATGTTTG s mm3.chr17 57185731 33 - 93529596 TTTTCCAGTATACTTGAATATATACAGTGTTTG a score=5575.000000 s hg15.chr22 14821254 62 + 49476972 TTTCCTTTGTGAGGGAATTAGTTGTAATTGAGGGTAGAGTCAAAGTTTGTTCAGCTTAGTGA s mm3.chr2 89780669 60 + 181423755 TTTCCTTTGTGAGAGTATGAATAGAAATTAATGGTGAAAT--AAATGTATATAGGTCAGCGA s rn2.chr3 18441054 54 - 165924081 ------GTATGAGAATATGAATCAAAATTAATAGTGAAGT--AAATTTATATATGGCAGGGA a score=1841.000000 s hg15.chr22 14821456 33 + 49476972 ATTGCTATTCTTTCTCTCTCCTTCTCTCTCTTT s mm3.chr1 103050719 31 - 195869683 ACTGTTACTCTTTCTC--TCCCTCTCTCTCTCT a score=7286.000000 s hg15.chr22 14821747 48 + 49476972 GTCATACA--CCCTGGAAAGGAGTA---AAGAAAGAGGAAAGATCCTCAGCGG s mm3.chr7 96474030 50 + 134401573 GTCATATAAGGCTCAGAAGGGTGTA---GAGAAAGAAGATAGACTCTCAGGGG s rn2.chr1 119630483 53 - 276301343 GTCATATAAGTCTCAGAAGGGTGTAAGGAAGAAAGAAGATAGAATCTCGGGGG a score=6002.000000 s hg15.chr22 14822056 98 + 49476972 TGAGTCCTAATTTAGGTTTGCAAAATATTATCAAGGCAAATCTTTATGAAGAT-----TTTATTGAGATATTATTTTATAACAAAAAAATGGGATAACTGTAA s mm3.chr9 85039947 101 - 124467299 TAAATTTTAAAATAGGCATGTAAAATATTTTCAGGGGACGGTTTCATGAAGTAGGACATCTGTCAACATCT-ATTTTCTCATGAAACAATAAGTGAT-TGTAA s rn2.chr8 87349852 99 - 127756414 TAACTTTTAAAATAGTTATTTAAATTATTTACAGTTAA-GGTTTCATGAAGCTCGATATCTGTCAGGCTTT--TTTTCCCATGAAATAGCAAGATAG-TGTAA a score=2985.000000 s hg15.chr22 14822166 42 + 49476972 AGATTGGTGGTAGAAGGAAGGAAGATGTTGGAGTGTTCAGTA s mm3.chr2 88866207 42 + 181423755 AAGTTAGTGATAGAAGGGGGACAGCAGTTGGAGGGTTCGGCA s rn2.chr3 17297621 36 - 165924081 ----TAGTAATT--AGAAGAACAGTGGTTGGAGCAATCTGCT a score=2345.000000 s hg15.chr22 14822417 42 + 49476972 ATGCTTTCTATGAATGATAATTATAAAAACTTGCTATAAATG s mm3.chr2 90426903 42 + 181423755 ATACTATCTATGAATTGAGAGTATAAAAACTTGCCATAATTG a score=5344.000000 s hg15.chr22 14822476 65 + 49476972 AAATCACATGAAACAGA-CATATTAACAA----AAATAGATACATTAGAGCAAT-TGAATTATAAATGTTT s mm3.chr2 88249202 70 + 181423755 AAAATATATGAAATGAGGCATAGTCAAAATTTAAAATAAACAAACAACAAAAAT-TGAATTATAAATGTTT s rn2.chr3 16346853 64 - 165924081 GAAATATGTGC-------CATATTCAAAATTATAAATAAACAAAATATACAAATGTCAGTTATAAATATTT a score=1686.000000 s hg15.chr22 14822541 43 + 49476972 TTTTCCTTCAAAAATTTTCCTTCATGTTATGTTCACATTCTTT s mm3.chr2 91569253 43 + 181423755 TTTTTAATCATTAGTTCTCCTTCACTTCATACCTATATTCTTT a score=5976.000000 s hg15.chr22 14822882 68 + 49476972 TTGTCCTACAAAAATGTTGATAAATTGCTTATAAGGGCTTATGTATTAGTAATGACCATGTCACCAAA s mm3.chr10 129443892 68 + 130738012 TTGACCAATGATAAAATTAATAAATTATGTACGAGCCTTTTTGGATTTCTCATGCAAATGTTACAAAA s rn2.chr13 102607781 68 + 105800825 TTTACCAATGATAAAATTAATAAATTATACACAAGTCTTATTGGACATTCCATGAAATTCTTACAAAT a score=5521.000000 s hg15.chr22 14822950 40 + 49476972 ATAATAAACCCAAATATGATAAGAATCACAATCAGAAAAT s mm3.chr9 39205498 40 + 124467299 ATAATAAACAAAAATATGACTAAAACCACAACCATACAGT s rn2.chr8 40272240 40 + 127756414 ATAACAAACAAAAATGTACCTGAATTCACAACCACAAACT a score=6493.000000 s hg15.chr22 14822990 53 + 49476972 ---ATATTTTTTCTTCTTTTATTTACAACCAACCAAACAAAATAACATAGCTATAA s mm3.chr2 90453535 53 + 181423755 ---ATATTTTATTTAAGATTATTAACTACCAATAAAATATTATTAGGTAGCTATAA s rn2.chr3 19503608 56 - 165924081 ATCATATTTTATTTAAGATTATTACCTACCAATGAAATATTATTGCATTGCAATGA a score=2009.000000 s hg15.chr22 14823240 32 + 49476972 AACAGGTGTTTAATTTCATAGGCTGATATAGT s mm3.chr2 90074021 29 - 181423755 AACTAATATCTAATCTGATAG---AATTTGGT s rn2.chr3 145560317 29 + 165924081 AGTTAATTTCTAATGTGGCAG---AATTTGCT a score=2205.000000 s hg15.chr22 14823272 15 + 49476972 CAATATCACTAGGTC s mm3.chr11 74086569 15 + 122862689 CAACATCACAATATT s rn2.chr10 56657764 15 + 106208427 CAACAGCACAATATT a score=2295.000000 s hg15.chr22 14823287 23 + 49476972 CATATTTTTTAGATTTAAATAAC s mm3.chr19 13040291 23 + 61093376 CATTCTTTCTGTTCATAGATAAC s rn2.chr1 220164622 23 + 276301343 CTTTCTCTTTGTTCATGGGTAAC a score=1111.000000 s hg15.chr22 14823319 35 + 49476972 CTGATTTCTCTTTGTTAGACTGTACTGATCTGATC s mm3.chr2 143529212 17 - 181423755 cTCATTT------------------TGATCTGTCT s rn2.chr3 149956004 17 - 165924081 cTCATTT------------------TGATCTTTCT a score=4368.000000 s hg15.chr22 14823361 33 + 49476972 AATAATCTAATATGCCTTAGATTATGTTGGAAC s mm3.chr14 74081378 33 - 115844145 AATAATTCACTATACCTAAGTCCTTCTAAGAAC s rn2.chr15 71561337 33 - 99209255 AATAATTCACTATATCTAAGACCTCCTATGAAC a score=152968.000000 s hg15.chr22 14823399 894 + 49476972 AGAACTTTCCTCAGGGCTGCCTTTATCTCCTTATTCTGGAGGCTATAGATAAGGGGATTGAAGAGTGGGGTCACCATAGCATAGAACAAAGTTTCAATTTTCTGCATCCCTGTAGAATGTCCGAGTCCTGGGCTCACATACATGACCATAAGAGAGCTATAGCACAGTGATACCACAGCCAAATGAGACCCACAGGTAGAGAAGGCCTTATGTCTCCCAGTGCTTGAAGGCATACCCAACATAGCTTTCAGGACAAGAGTATAGGATCCAATAATAAAGAGGAAGTTACCAAAAATAACTAATGAGCTTAGAGTGTAGCAAAACAGTTGGATTCTTGGGGCAGAAACACAATCCAATGCAAATCGTGGCCCTGGGTCACACACAACATGGTCAATAATGTTTGGGCCACAGAAGGGCATCTGAGAGATGAGAACAATGGGGATCAGGAACCACAGAAATCCACAAACCCAGCACAGTATGACCAGTTTGGCATAGAGATGCCCAGTCATGATATTAGGATAGAGCAAGGGACGGCAGATAGCAAGGTACTGATCAAAGGCCATCACAGTCAAAAGCAAGCATTCTGATGTACCCAAAGAGAAGAAGAAATAAAACTGGAGAAAACATCCAGCAAAGGAGATGTTTTTTTTCTCTGAAAGGAAGTTGACCAACATCTTGGGAACTGTAGAAGAGACATACCATATCTCTAAAAAGGAGAAATTTCCCAGGAACATGTACATGGGAGTGTGAAGTCGCCGGTCACACCACAGGACAAAAGCAATGGCTCCATTCCCTGTTATAGTCAGTGCATATGTTGTAGTAAAGAGT----------GAGAAGAGGAAGATCTGAATTGTCCACTCACAAGAGAAACCTTGGAGTATAAATTCATTTACAAAA s mm3.chr14 73815386 894 - 115844145 AGCAGTTTCTTTAAGGCATTTTTCATTTCTTTGTTTCGGAGAGTATAGATGAGAGGATTTAAGAGGGGGGTCAAGGCTGAGTAAATCAGAGTAACAATCTTCTGCATTCCTGCAGGATTCCCTGATGTTGGGCTCACATACATCACCATAAGAGTTCCATAGAACAGAGACACAACCACTAAATGAGATCCACATGTAGAGAAAGCTTTAGTTCGACCAGCACCAGAAGGAACTCGAAACACAGCTCTGAGTACTAGAGTATAGGATCCCAGGATGCAGAAGAAGGGCCCAAAGATAATCATTGAGTTGAAGGTATAACAGAGAAGCTCAGTGGAAGGAGCAGGCACACAGGATAGTGCAAACAATGGTCCTGGGTCACACACAAAGTGGTCAATGATGTTAGGACCACAGAAAGGAAGTTGGGAGATGAGGACAATTGGGACTGGATAGCAGAGGAATCCACTCACCCAGCAGATACAAATCAGGATGACACAGAACTTCCTAGTCATGATAGAGGGGTAGTGTAATGGTCGACAGATAGCCAGGTATCGATCATAAGCCATAGCTGACAAGAAGAAACACTCTGTTGTACCAAGTGAAAAAAAGAAATAGAATTGAAGGAAGCAGGCAGAGAAGGAGATGGTCTTATTCTCAGAGAGAATATTGACCAACATGTTTGGGATGGTGGAAGAGACATACCATATCTCTAAAAAGGCAAAGTTTCCCAGGAAGATGTACATGGGTGTGTGGAGCCTCTGATCCCATCTCACAGCACAAACAATAGTTCCATTCCCCAGCAAGGTCAG----------GAGGTAAAGAATCAGAATTGAACAGAAGAAGAAACTTTGCATCTCCCCCTGATTACTGAAACCCAGGAGGATAAACTCAGTCACAAAA s rn2.chr15 71334694 894 - 99209255 AGCACTTTCTTTAAGGCATTTTTCATGTCTTTGTTTCGGAGACTGTAGATGAGGGGATTTATGAGGGGTGTCAGGGCTGAATAAATCAGAGTGACGATCTTCTGCATGCCTGCTGGGTTCCCTGATGTTGGGCTCACATACATCACCATAAGCGTTCCATAGAACAGAGACACCACCACTAAGTGGGATCCACATGTGGAGAAAGCTTTAGTTCGACCAGCACCAGAAGGAACTCGAAGCACAGCTCTGAGCACTAGAGTGTAGGATCCCAAGATAGAGCAGAAGGGTCCAAAGATAATCATTGAGTTGAAGGTATAACAGAGAAGCTCGGTGGAAGGAGCAGGTACGCAGGATAGTGCGAACAATGGTCCTGGGTCACACACAAAGTGGTCAATGATGTTAGGTCCACAGAAAGGAAGTTGGGAGATGAGGATAATGGGGACTGGATAGCACAGGAATCCACTCACCCAGCAGATACAAATCAGGATGACACAGAACTTCCTAGTCATGATAGAGGGGTAGTGTAATGGTCGACAGATAGCCAGGTATCGATCGTAAGCCATAGCTGACAGGAAGAAACACTCTGTTGTACCAAGTGAAAAAAAGAAATAGAATTGGAAGAAGCAGGCAGAGAAGGAGATGGTCTTACTCTCAGAGAGGATATTGACCAGCATGTTTGGGATGGTGGAAGAGACATACCATATCTCTAAAAAGGCAAAGTTTCCCAGGAAGATGTACATGGGTGTGTGGAGCTTCTGATCCCATCTAACAGCACACACAATAGCTCCATTCCCCAGCAAGGTCAA----------GAGGTAAAGAACCAGAACTGAAGAGAAGAAGAAACTTCGCATCTCCCCCTGGATACTGAAACCCAGGAGGATAAACTCAGTCACAAAG a score=2211.000000 s hg15.chr22 14824293 14 + 49476972 GCAAAGCTGGAATT s mm3.chr14 74061517 13 - 115844145 -TGATGCTGGAGTT s rn2.chr15 71522395 13 - 99209255 -TGGTGCTGGAGTT a score=2151.000000 s hg15.chr22 14824322 31 + 49476972 CATTAGGCCAGTGACCTGC-AAGGTCAAGGGA s mm3.chr1 174892601 27 + 195869683 AATTGGGTC----ATCTGTGAAGGT-AAGAAA s rn2.chr13 76235052 28 + 105800825 AATTGGGTC----ATCTATGAAGGTAAAAAAA a score=410.000000 s hg15.chr22 14824353 11 + 49476972 CACATTATCAG s mm3.chr2 87408367 11 + 181423755 AATAAGATAAG s rn2.chr3 15248178 11 - 165924081 ATGAAGATAAG a score=6377.000000 s hg15.chr22 14824364 69 + 49476972 -TCAGGACTCTTTTAT---AAAATGTGTTCCTTTTTTAAGAATGAAGAGAAGATAATG-----AACATGAAGTCATTT s mm3.chr19 13021392 73 + 61093376 AAGAGGACCTCACAAT---AAAATAAGT--CATTTCAAATAATAGAGTGTAAATTAAGTCTCTGATATGTAGTCTTTT s rn2.chr1 220084571 76 + 276301343 AAGAGAACCTCACAATAGAAGAATAAGT--CATTTCGAGTAATAGAGTGTAAATTAAGCCTTTGATATGTAGTCTTTT a score=5977.000000 s hg15.chr22 14824534 34 + 49476972 TCTGCCATCTTCTAAATCTCTCCTTAATATGCAA s mm3.chr9 85629646 34 - 124467299 TTTGCAATCTTTTATATCTCTCCTTAAAATGCAA s rn2.chr8 87957098 34 - 127756414 TTTTCAATCTTTTCTATCTCTTCTTAGAATGGAA a score=5831.000000 s hg15.chr22 14824896 47 + 49476972 ATCTAATGTTACTCACCAATATTGATTTTTAAT---ATTAATATTGTAAA s mm3.chr2 144088987 47 - 181423755 ATCTAATATAATTCATGGATAATAATTTTAAAT---ACTATTACCATAAA s rn2.chr3 150590616 50 - 165924081 ATCTAATATGATTTGTGAACAATAATTTTAAATATGATTATTACCACAGC a score=13873.000000 s hg15.chr22 14825024 95 + 49476972 TTATTATATTGATAAAATCAATATAATATTGATTT--AGTCA-----------TTATGTACAAAAGTTTGCAAAGATCTAGACATTAAACTTTACTTTTGAAGGTATT s mm3.chrX 114066525 107 - 149996094 TTGTCATATTATTAAAATCAAGATAATTTTGATTTTGAATTAGGTGTCCAGACTGATGTTCTAAA-TTAGTAACAATGTAAAATTAATGCTTCATTCTTTAAAATATT s rn2.chrX 12909086 107 - 133900917 TTGTCATATTATTAAAATCAAGATAATTTTGATTTTGAATAAGGTGTCCAGACTGATGTTCTAAA-TTAGTAACAATGTAATATTAATGCTTCATTCTTTAAAATATT a score=8375.000000 s hg15.chr22 14825222 58 + 49476972 CTTCTTCCTACATTCTTATAAAAATATATTAGGGATTTGAGTTACCTGGAAAAAACTT s mm3.chr11 47884528 58 - 122862689 CTTGTTTTTATACTTCTACAAAAGTATATTAGAAAATATAGTTTCATGAAAAAGTCCT s rn2.chr10 48434406 58 - 106208427 CTTGTTTTTACACTTGTATAAAAGTATATTGAAAAATATAGTTTCAAGAAAAATTCCT a score=3191.000000 s hg15.chr22 14825432 31 + 49476972 TTGTGCTTCTTTTAGTAATATATGTCTCTTT s mm3.chr7 75051196 31 + 134401573 TTATCCTTTTTCTAATAATATATGTCTCCTT s rn2.chr1 133838353 19 + 276301343 ------------TAGTAATCTATGACTTATT a score=5944.000000 s hg15.chr22 14825579 37 + 49476972 GTTTTGACAGGAACCAAATCTCTAAATGATTTATTTT s mm3.chr10 52005217 37 - 130738012 GTTTTAATATGAACCAAATATCTAAAAGACCAATTTT s rn2.chr7 1711395 37 + 139049774 GTTTCGATATGAACCAAATAGCTAAAAGAAAAAATTT a score=979.000000 s hg15.chr22 14825616 12 + 49476972 ATAAATCATATT s mm3.chr2 94151562 12 - 181423755 ATAAATCATGTT a score=1360.000000 s hg15.chr22 14826587 14 + 49476972 CTGAATAGCTTCAG s mm3.chr9 85054959 14 - 124467299 CTAGATTGCTTGAA s rn2.chr8 40140415 14 + 127756414 CCTGATTGCTACAA a score=8623.000000 s hg15.chr22 14826601 84 + 49476972 TTTCTTATGTTCTCTTCTTTGTGATCATTTTCTGTATTTGGAATTCTATTTATCTCCATCTACATCTGTACAAACCCTCCTTCA s mm3.chr2 93316971 84 - 181423755 TTATTTATGTTTATTTAATTGTAAATATGTACTATACTTAAAAAGCAACATATCTCCATGAGCCTTTTCATGAACTCTTTTACA s rn2.chr3 150048495 84 + 165924081 TTACTTATGTTTACTTAATTCTAAATATGTACTTTACTTTTAAAACAACATATATTCAAGAGCCTTTTCATGTATTCTTTTATA a score=5123.000000 s hg15.chr22 14827541 39 + 49476972 -ATGTTTCTTTCAAAAGATTAGAATAACTAGTAAAAATTA s mm3.chr2 87490804 39 + 181423755 -ATATTTTTTTCAAGAAATTAGAAAAAGAAGAAAAATTTA s rn2.chr3 15366831 40 - 165924081 ATAAGGTTTTTCAAGAAATTGGAAAAACAAGACAAACTTA a score=4676.000000 s hg15.chr22 14827978 44 + 49476972 TGTGTTTCTGCACTTTGCTTCTTCAATCAGGCACTCTGTGACTT s mm3.chr7 96352083 44 + 134401573 TGTGTTTGTGCACTTTGCTGTTTGACCTAAGAATTCTGCAACCT s rn2.chr1 156849998 44 + 276301343 GGTGGTTATGCATTTTTCTGTCAGAGGTGAGACTCCTGCAACCT a score=8966.000000 s hg15.chr22 14829070 61 + 49476972 ACATCTCTAGTAAGCTCATTGTCTTCTGCCGTATTAAACTTTAATGGGTAGCTGGTAGACA s mm3.chr2 90994678 55 + 181423755 ACATCTTCA------TCATTGTCTTCTACAGTGATAAGCTCTAGTGTGAAATTAGTAAACA s rn2.chr3 20058945 55 - 165924081 AAATCTTTA------TCATTGTCTTCTACAGTGATAGGCTCCAGTGTGAAATTAGTAAACA a score=6593.000000 s hg15.chr22 14829625 38 + 49476972 ATTTACAATATTTTGAAGTTAGGTTTGATTTTTACCAT s mm3.chrUn_random 76439539 38 + 117911829 ACTTTAAGTATGTTGAAATTAAATTTGATTTTTAACAT s rn2.chr1 156114598 38 + 276301343 CCTTGAAGTATGCTGGAATTAAATTTGATTTTTAACAT a score=10306.000000 s hg15.chr22 14829835 67 + 49476972 ACTGATAAAATTTTGACACATAAAGTTA-ATTGCCTAAGCTTAGTAAATGGGGGACAGGCTTGCTTAT s mm3.chr11 60228637 66 + 122862689 ACTAAGAAGACTTTCAGATGAAAAGTAAGACTG--TAAACCTGGTAGATGAGAGCCAGGTTTGCTTAT s rn2.chr10 42484764 66 + 106208427 ACTAAGGAGACTTTCAGATGAAAAGTAAGACTG--TAAGCCTGGTAGATGAGAACCAGGTTTGCTTAT a score=6679.000000 s hg15.chr22 14834722 47 + 49476972 CCAAATGGCCAGAGGCA----------TCTGGGGTGAGGGATGAGCCTACAAGGGCG s mm3.chr7 5258102 57 - 134401573 CCATATGCCCAAAGGTGGCCTGGCTTCTCAGAGGTCAGGGATAAGCCTACAAGGATG s rn2.chr1 83403194 50 - 276301343 -------CCGGAAGGTGGCCTGGCTTCTCAGAGGTCAGGGATGATCCTGCAAGGATG a score=15574.000000 s hg15.chr22 14835698 285 + 49476972 TGCACCTGATGTTCACCAGAGGCCTAGGAATCCACTTGCAGCCTGGGATC------CTACAGGGGCCTAATGTTACCCTGCAGATTGGGTAGCCACTTGGAGATCAGGTATCAACCTGGGGACTGTGGTTGACCTGCAGGCTAATGTCCACCTGGGGACTGGTTATTCACCTGAGGCCTGATGCGCACCTGGGGCCGAATGTCCCCCTCAGGGTGAAT-TCCACCTCAGGCCTGTATGTCCACCTGGGGCCTGATGTCTGCCT-TAGATCTGTGTCCCACTGGGGCCTTGTGT s mm3.chr12 96148732 291 + 114462600 TGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGAGTC-AGTGTGCACCTGATGGTCA-GTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGT s rn2.chr6 121204990 205 + 146362310 TTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGAAATC-AGTGTTCACCTGGTGGTCA-GTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTGA------------------------------------GGGTTAGTGT a score=6516.000000 s hg15.chr22 14836254 62 + 49476972 TTCAGTTGGGGCCTGCTGTACATCTGGGACCTTGGCGTCTATCTGAGGCCTGATGGCTACCT s mm3.chr9 39666236 62 + 124467299 TTGAGTTGAGCCTGGCTAGAAACCTCATACCACAAAGTTTATCTGAGGACTCGCAGCTACCT s rn2.chr8 40806984 62 + 127756414 TCGAGTTGAGCATGGCAAGGAATCTCATATCACAGGGTTGGTCTGAGGACTCCCAGTCATCT a score=1929.000000 s hg15.chr22 14837213 24 + 49476972 CTGATGTACTCCTGGGTTCTAGGG s mm3.chr9 120634774 24 + 124467299 CTGCTGTGCACCTGGATGCTGCTG s rn2.chr8 124186136 21 + 127756414 ctgccatgcacctgga---tgcta a score=20390.000000 s hg15.chr22 14837237 330 + 49476972 TCCTCTTGGGACCTGATGTCTACCAGGATCCTGGTATCCACCTGGGGCCTGGTATCCACCTAGGGCTTGATATTCACCTGGGGCCTAGGAATCCACTTGATAACTGGTGCCCATCAGGGTCCTGATGTTCACCT-----------------TGGGAACAGGTAACCACCTGAGGCTTGATGCCCACTTAGGGTATAAGTGTTTATCTGGGGTCTAGTGTTCACATGGGGCCTGATTTCAACCTTGGGCCTAGGTATTCACCAGTGGACTAGTGTTCAGCTGGGGCCAGATGTTCACTTGGGGCCTGGTGTCAACTTGA-----AGCATGGTTGTCAGCCTGGGACCTGATGT s mm3.chr12 96148696 351 + 114462600 TCCACCTGGGAGTCAGTATACACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGGGAGTCAGT-GTGCACCTGATGGTCAGTGTGCACCTGGGAGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGTGGCTGGGTACCTGAGGGCTAGTGT s rn2.chr6 121204954 250 + 146362310 TCCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGCACCTGGAGGTCAGT-GTGCACCTGGGAGTCAGTGTGCACCTGGAAATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG-----------------------------------------------GCACCTGA------------------------------------GGGTTAGTGTTGCTGGGAA--------------- a score=20546.000000 s hg15.chr22 14837828 362 + 49476972 CTGAGTTCTGAGTGTTCACATAGGGCCTGCTGTCAACTTGGGACCTAAGTATTTACCTAGGGCTTGGGTGTCCACCTGGGGCCTGACTTCCAACTGGATCTTGTGTCAACATGGGGCCTGATGTCCACTTTGGGCCTAGGTAACTTCCTGATGACTAATGCCCACATGGCTCCTAAGGACCATCTGAGGCCTGGTATTAATTTAGAGACTGGTATCCATCTGGGGTCCAGGTATCCACTTGGGACCTGATGTTCACCTGGAGTGTAGGAATTCACGTGGGGCCTGGTGTCCACCTTGAGTGTGTGTATCCAACTGAGTGCTGGTGTCCACCTGGAGTCCAGTGTATACCTGGGGCCTGATGT s mm3.chr12 96148682 341 + 114462600 CTGCTTCCTCAACCTCCACCTGGGAGTCAGTATACACCTGGGA-GTCAGTGTGCACCTGGGAGTC-AGTGTGCACCTGGGAGTCAGTGTGCACCTGG-----GAGTCAGTGT-GCACCTGATGGTCAGTGTGCACCTGGG------------AGTCAGTGTGCACCTGATGGTCAGTGTGTACCTGGGGGTCAGTGTGCACCTGGCGGTCAGTGTGTACCTGGGGTGTCAGTGTGCACCTGGGGGTCAGTGTATACCTGGGG-GTCAGTGTATACCTGGGGGTCAGTGTGCACCTGGGGGGTCAGTGTGCACCTGATGGTCAGTGTGCACCTGGGGGTCAGTGTGAACCTGGGGGTCAGTGT s rn2.chr6 121204940 255 + 146362310 CTGCTTCCCCAACCTCCACCTGGGAGTCAGTGTGCACCTGGAA-ATCAGTGTTCACCTGGTGGTC-AGTGTGCACCTGGGGGTCAGGGTGCACCTGG-----AGGTCAGTGT-GCACCTGGGAGTCAGTGTGCACCTGGA------------AATCAGTGTTCACCTGGTGGTCAGTGTGCACCTGGGGGTCAGGGTGTACCTGGAGGTCAGTGTGCACCTGGTG-GTCAGTGTGCGCCTGGGGGTCAGTG--TGCCTGG------------------------------------------------GCACCTGA------------------------------------GGGTTAGTGT a score=708.000000 s hg15.chr22 14838519 274 + 49476972 CCAGGTGGACATCAGGCCGCAGGTGAATATCAGGCCTCAGGTGGTTGGGTTACTTATAGCATAGGTGG-CCATCAGGT-----------CCCAGGTCTATATCCACTCCCCACCTGAAAATCAGGATCCAGGTGGATACCCATGTCCTAGGTGAACACCAGGTTCCAAATGAACATCAGGCTCCAAGTGAACACACAGGCCCCAGTTCAATACCAGCCTT-AGGTAGACATCAGGACCCAGGTGGA-------CCCCAGGCCCAATGTGCATGCCTAGTCTCTTGGAATACATC s mm3.chrUn_random 115326911 282 + 117911829 CCAGGTGGAAATAGGCCTCCAGGTGGGAGTAGGTCTCCAGGTGGGAGTGGGCCTCCAGGTGGGAGTGGGCCTCCAGGTAGGATTGGGTCTCCAggtgggagtggac-ctccaggtggaagtgggcctccaggtgggagtgggtctcc-aggtgggattgggtctccaggtgggagtggacctccaggtgggagtg--ggctccaggtgggattgggtctccaggtgggagtgggcctccaggtgggagtgggcctccagg-----tgggagtg---ggCCTCCAGGTGGAGAGT a score=8336.000000 s hg15.chr22 14838793 86 + 49476972 ATTTTCCAGGTGGACACCCAGATTCCTGGTAGACATCTGGTGCCAGGTGGATATCTGGCTGCAGGTGGACATCAGGCCCCAGGTGG s mm3.chrUn_random 115327193 85 + 117911829 GGGCTCCAGATGGGCA-TGGGTTTCCAGGTAGGCATGAGACACCAGGTGGGAATGGATCTCCAGGTGGGCATGAGGCACCAGGTGG s rn2.chr10 101887990 79 + 106208427 GGGCACCAGGCGGGTG-TGGGGCACCAAGAGGGCATGGAACTCCAGGTGGG------CCTCCAGGTGGGCATGGGCCTCCAGGTGG a score=1934.000000 s hg15.chr22 14838917 17 + 49476972 CATCAGGCCCCAGTTAA s mm3.chr11 77114257 17 + 122862689 CACCTGGCCCTATGTAT s rn2.chr10 42469261 17 - 106208427 CACCTGGCCTTGTGTGT a score=1758.000000 s hg15.chr22 14838934 17 + 49476972 ACACTTGACTAAAAGTG s mm3.chr11 77114238 17 + 122862689 ACACCTGGTTATGAATG s rn2.chr10 42469242 17 - 106208427 ACACCTGGACCTGTGTG a score=22127.000000 s hg15.chr22 14838951 243 + 49476972 TGCATCAAGACCCAGGTTGACTCCCAGGCTTCA-GTGCACACTAGGCCCAAAGTGT--------------ACACCCA---------------TGTCCAGGTGGGCATCAGGCCC---------------------------------AAGGTGTACACCAGAACCCACGTGGACATCAGGTTCCAGGTTGACACCAGTCTCT-----------------AGGTAGATCCTTAAGCCCCAATTGGTCATCAGGCCCAAGGTGGATACCTTGACCCCAGGGAGTCACCAGGTCCCAGG-------CCGGCCTCAGGTGGACACTAAGCCCTA s mm3.chr4 151352257 277 + 152921959 TGCCTCAGGGTCTAAGTTAATACCTAGACTTCAGGTAGAAACCAATTCCAATATATGACAAACGGGCTCCAAGCCCAGGCCTCAATAGACAGTGTCTAGGTGAGCATCAGACTC---------------------------------CAGGTATATAGGAGGCCCCAAGTGGATATGAAGCCCCA-GTGGACACTCGGGCCC-----------------AGGTGAATACTTATATAACAAGTAGATACTAGACCTCG-GTAGACACCAAG-TCTTAATTAAATATCAGGTCCCAGGAGAAATTCAGGCTGCACTTGGACATTCAGGCTCA s rn2.chr5 188219789 321 + 191625135 TGCTTCAGGGTCTAAGGTCACACCTAGACTTCAGGTAGAAACCAATTCCAATATCTGACAAGCAGGCTCCAAGCCCAGTCCTTGATAGACAGTGTCTAGGTGAGCATCAGACCCACAGGGAGACAGTGCCAGGGAGACAGCAGACCCCAGGTGTACAGTAGGCCCCAGGGAGATATGAAGCCCCA-GTGAACACTCAGGCCCGAGGTGAATGAGGCCTGAGGTGAACGCTTATATAACAAGCGTGTACTCGACCCCATGTAGGCATCAAG-TCTCAAGTGGACATCGGT-------AGAAATTCAGGCTGCACTTGGACATTCAGGCTTA a score=3015.000000 s hg15.chr22 14839590 288 + 49476972 CCCCAGGTGGATATAAGGCCTCAGGCAAACACCAGGCCCCAGGTAGACATTAGATACGAGATGGACACTCAGGCCACAAATGAACATCTGTCCCCAGGTGGACATCCATCCCAAGGTGGACATCAGGCCAGAGATGTAAACCCAGGCCCCAGGAGAACCCCAGGCCCCAGGAGGACACTGAAGTGCCAGAAGGACACCCAGTCCCTAGGTAACTACAAGGCCTCAAGTGGACATGATGTTCCAGATGAATATGAGGCCCCAAGTGGATACTAGGCC--CAGGTGGACCCC s mm3.chrUn_random 115326909 284 + 117911829 CTCCAGGTGGAAATAGGCCTCCAGGTGGGAGTAGGTCTCCAGGTGGGAGTGGGCCTCCAGGTGGG-AGTGGGCCTCCAGGTAGGATTGGGTCTCCAggtgggagtggacctccaggtggaagtgggcctccaggtgggagtg-ggtctccaggtgggattgggtctccaggtggg-agtggacctccaggtgggagt--gggctccaggtgggattgggtctccaggtgggagtgggcctccaggtgggagtgggcctccaggtggg-agtgggCCTCCAGGTGGAGAGT a score=11296.000000 s hg15.chr22 14839878 131 + 49476972 AGGTCTCAGGGGCACACCAGGCCCCAGGGGAACACCAGACCCTAGGTAAGCATGCAGTCCCAGGTGGACATCAGGTGCCAGGAGGACACCAGGACCCAGTTGGTCATCAATCCACAGCTGAACACCAGTTC s mm3.chrUn_random 115327193 118 + 117911829 GGGCTCCAGATGGGCATGGGTTTCCAGGTAGGCATGAGACACCAGGTGGGAATGGATCTCCAGGTGGGCATGAGGCACCAGGTGGGCG------------TGGCCATGAAGTTCCAAGTAGACA-CAGTTC s rn2.chr10 101887990 112 + 106208427 GGGCACCAGGCGGGTGTGGGGCACCAAGAGGGCATGGAACTCCAGGTGGG------CCTCCAGGTGGGCATGGGCCTCCAGGTGGGCA------------TGGCCATGAGGTTCCAGGAAGACA-CAGTTC a score=16623.000000 s hg15.chr22 14843726 131 + 49476972 CTGGGAGAGGAGCATCCATCCATCTTGTGTGCATAGCTTTCTGCTCCATTTTCATGAGTTTTGTCTCCTTGGCAGAAATGCCCATTTGGTGATCCTGAGCCTGTGCTGGCTGTTCTCTAAGTGCCAAAGTC s mm3.chr5 117737875 120 - 149719773 CTGGGAGCTGAGCATCCATCCAAAC----AGCAATACTTC----TTTATTTCTGAGA---TGACCTCCTTGTTAGAAATACCCAGTCAGGAATCTCAGGCCAGTGTTGGTTGTTCTCTGAACCCCATGGCC s rn2.chr14 79490182 121 + 107821284 CCGGGAGCTGAGCATCCCTCCAAAC----GGCAACACTTC---TTTTATTTCTGAGA---TGACCTCCTTGTTAGAAATACCCAGTCAGGAATCTCAGACCAGTGCTGGCTGTTCTCTGAACCCCACGGCC a score=18099.000000 s hg15.chr22 14846323 529 + 49476972 CAAGCTATTTGCACATATAGCTTTCATACCAATGACACTAAAATGTATAGCACAAAGATTCATATACATAAAAATTACA-ACATTGAAAATAATATTAGGTGACACTAAAACTGTCATAGAAATACACATTT---ATATAAAACATAAAGTA-ACATCAAGTATTAAATAAATTT--TAGAAACTTTGATTACTAATCAGATGAACAAGTGATTAACCTTTTTATCCAGTAAACAAAGCATACATCTTATTTTCAAATTCCAGAGACAAATATTTTAAATATTGAGGTTTAAGACCTAAAAATGTGTCACTGACTTCATGGAAGTAGATATTCACAAGGTGATATTTTCTAGGCTCTCTGAAATTACATCAGAAAAATGGGAATTAGAATATAACCCACAAATAATATCTGGCCACATACAAA-GTAATTGAAGATCAATTTAAATAGCTATTGGATTAA----GAAATAGAGACTGAGGTAAATTTACAGGGTCAGGGAGGATCTAAGGAGGAAGCATTGACACTGGAGCCCAAGGACCT s mm3.chrUn_random 80236640 528 - 117911829 caagacatttgCATGTATAAATTTAATATTTAAGAGATTAAAATGTATAACACAAACATTCATATAAATGAGAAATGGACATATTAAAAAGCATATTAGATAGCATTAAA-CTATTATAACATCAAACTTCTGGTATACAACAAATAATGAATATAGAGAGTGTTAAATACCTTTATTAGAAAGTTTGATGA-GAATCAGGTAAAC----GAACAGAATTTACGACAGGTAAACATAGTGTACATGTTATTTTTAAATTCCAGACAAAAGCATTTAAAAGA--AAAATTTTAGGCCTAAAAATGT--CAGTAACTTCATGAAAGTAGAAATCTAACAGACCATATTTTCTAAACTCTGTGAAATGACAGTAGAAATGTCAG---TGAAATGAAATCAACAAGTAATATCTAGCCACATGCAAGTTTTATTTAAGATCAACTTAAATAACTATTGGGTTAATGTGAAAATTAAAGCAAAGAATATTTTACAAAGTCATGGAAGTACTTAAGAGGAAGTCTTGTGACTGGAGTGAAAAGACTT a score=33244.000000 s hg15.chr22 14859871 190 + 49476972 AATCAAATATGGACTTTATACAGAGTATCAATTAGAGAATGTAT--------------------GAAGAAGGC--AAGGCAATCTTCTCAACTTATGACTTTAACACGTTCAAAGGTAACATCTTTTATCTGGACAGGATCTATTGCAGAATCAAGCCCCATTGTTGTCTGGAAGCAGACTAAAGGGAAGAAAAGAAATGCTTATATTTGAT s mm3.chr2 157990587 212 - 181423755 AACCAGATGGAAGCCTAATGCAGAGTATCAATTAGACaaaatataagaaaacaacaaaaaaagaaagaaaagcaaaagaaaaaaTTCTTAACTTACCCCTTTAACATGTTCAAAAGTGACATTTTTCATCTGGACAGGGTCTACCGCAGAATCAAGTCCTGTAGTTGTCCGAAAGCGCACTAACAAGAAGAAAATATTCGAGCATATTTGAT s rn2.chr17 560836 192 - 93540836 AACCAAATGGAAGCCTAATGCAGAGTATCAATTAGACAAAATAC--------------------AAAGAAAGCAAAAGAAAAAAACCTTAACTTACCCCTTTAACATGTTCAAAAGTGACATTTTTCATCTGGACAGGGTCTACTGCAGAATCAAGTCCTGTAGTTGTCCGGAAGCGCACTAACAGGAAGAAAGTATGTGAGGACATTTGAT a score=35246.000000 s hg15.chr22 14861501 218 + 49476972 AGAATCATGTA-TTTAAAGGAATAAGAAACTAACAAGTTAGATTAATAAAAATACTTTTACCAGAT-AAAATGGGTTTTTTAAAAGTCCGTAAATGCCGAATAGCAGCAGAAAGAAGAGAATCAGACAGGTTCGTCTTAGGGAATCTAGGAGAGAAAGAAAAAGCCTTACATCAAATAACATTAATGAAATATGACAGCTCAATGAAATGCAAATATTAG s mm3.chr2 157996484 208 - 181423755 AAAGCCAGATG-TTTAAGGAGGAAATAAATTAAC---TCAGATATATGAAAGT--CTTTACCAGATAAAAACGGATTTTTTAAGAGTCCATAAATGCCAAACAGGAGCAAAACAAAGAGGATCAGACGAGTTCGCCTTAAGGAATCTGAAAGAG---GAAAAGGACTTGAATTAAATGACAACAATGAAATATAACACCTTTATGGC---CAAGCATTAG s rn2.chr17 563336 208 - 93540836 AAAGCCAGATGCTTTAAAGAGGAAATAAATTAAC---TCAAATATATGAAAGT--CTTTACCAGATAAAAATGGATTTTTTAAGAGTCCATAAATGCCAAACAGGAGCAAAACAAAGAGAATCAGACGAGTTCGCCTTAAGGAATCTGAAAGAG---GAAAAGGCCTTGAATTAAATGATATCAATTAAATATAACACCTT-ATGGT---CAAGTATTAG a score=38714.000000 s hg15.chr22 14862288 254 + 49476972 AGAAAAGTTAC--TTAAAACTTAAATGTAGGACTATGACTTCCTTTCAGTTATTCTTCTCAAACATGGACAGTTTCAAATCAACTTACTACTGTTTTTTTTTTGAGAGTGCTTGAGCTTTCAGAAAACCTTCTGCAAACCCAGTTTTCAATGCATTTTGGTGAGCTTCAGGTATGTTTTTGGTTTTCATGAGTCTGTCCAAACTCTCAACATCTGATCCTCTGTCCCGCAAAAGAAACCCGTGAATACACAAACAA s mm3.chr2 157998614 238 - 181423755 AGAAAAGTTTTTGTTAACACTTTAAGGAGAGGACTAAGCATCTTTCCAACTCTCCTTC-----------------CTATTCATCATACCATTG-GTCTTCTGTGTAAGAGCTTGAGCTTTGAGAAAACCCTCTGCAAAACCAGTTTTAAATGCATCTTGGTGAGCTTCAGGTATGTTTTTAGTTTTCATAAGTTTGTCCAAACTCTCAAGATCTGTTCCTCTGTCCCGCAAAAGAAACCCCTAAAAATGTAAGAAA s rn2.chr17 565494 203 - 93540836 -----------------------------------aGGTGTCTTTCCAACTATCCTTC-----------------CTATTCATCGTACCATTG-GTCTTCTGTGTAAGAGCTTGAGCTTTGAGAAAACCCTCTGCAAAACCAGTTTTAAATGCATCTTGGTGAGCTTCAGGTATGTTTTTAGTTTTCATAAGTTTGTCCAAACTCTCAAGATCTGTTCCTCTGTCCCGCAAAAGAAACCCCTAAAAATGTAAGAAA a score=14957.000000 s hg15.chr22 14863240 122 + 49476972 GTCTTAAAGTTTTCAGTCTGTTGGAGAAACATATGTAAATAGCTAAATTTCTTAAATCATTTAGATATTATATTAGAAGTATTAGGTA---------------TGCTACCTCAGGAAGACAGGAAAGGTATTATAGA-------------- s mm3.chr2 157998891 133 - 181423755 GTCTGGAGATTTTCAATCTACTGGACAAAATTAAACAAATAGGCATACTTTACAAATAATTTTGATATTCTGCTAGAAGCAATATGTACGGCAATATAATGACTGCTAGCTATGGAAAACAGAA----TTTCTTACT-------------- s rn2.chr17 565734 147 - 93540836 GTCTGGAGATTTTCAGTTTACTGGACAAAATTAAACAAATAGACATACTTTACAAATAATTTTGATATTTTGCTAAAAGCAACTGGTATAGCAATATAATGACTGCTAGCTATGGAAAACAAAA----TCTCTTACTGAGAATGGAACCCT a score=33312.000000 s hg15.chr22 14863427 424 + 49476972 TGGAG-ATTCTGCTGATGGTTT---------------------------------------------------------------CCCTTTCTCA-------------AGAGAGAAAATAAACACCATG----AACAATTTGACAGGG--GTATGGAACAATTAGCCTTCAGTGCTCAAGATCTACCAGCAAACTTACATAAGACTTCAATGCCAAAAGAAGAGCAAGA------AACAGAGGGGCATATTGAATGGCGAGAAGAGAAACATGGCAGGTAGAGACCAAATGATGAAATTCCCAG-TATATCAGGTAGAGGTAAGAAATAAAGTAAAGTAATGTAACTAGATCATCAttttagaaggactgatgggtggcagtctggaggtgcgactgaatgcagcaagactagaggcaaggagactaaacaagtattcattagagtaatttaggcaacaaatggttatagcc---tatctatggcagtgggacagatttaa---gaaagatttaggagat s mm3.chr2 157999428 411 - 181423755 tGAAGAAAACTGT------------------------------------------------------------------------CACAGACACACACACAAATATGTACACAGGAAACAGACATCATGAGCAAACAATTTGAAAGAACAATATGAAATAA-----------TGTCCAAAAACTGTAAATAACCTG--GTAAG--CATAATGCCAAGAAGAGA-TAAGGGCATTT----AATAACCATATTCAA-GATGAGAACAGAAAAATGGTAAATAAAGTACA----ATAAAGCACTGTGTTATGTAAGGCTATGTTGAGTAATAAAGCGGAGCAATGCAATTAA---------TAAAAAGCAATGAT-GATACAAGTTTGGAGGCAAGACT-AAAGTAGCAAGAGTAGAAACAAAG-GATTAAACGAGTACTCAGTGGAGTAATCCAAACAATAAAATGTTATACTTGTCTATGAATGGCAGTGCAACAAAGAGGAAGGGAAAATTTTAAGAAAT s rn2.chr17 566261 488 - 93540836 tGAAGAAAACTATCACTCACTTacagagagacagacagacagacagacagacacagacagacacacacacacacacacacacacacacacacacatacacaAATATAAACACAGGAAACAGACATCATGAGCAAATAACTTGAAAGAGCAATGTGAAAAAC-----------TGTAC-AAAACTGTAAATAATCTG--GTAAGA-TATAGTGCCAAGAAGAGAGCAAGGGTATTTAATGAATGACCATATTCAA-GATGAGAACAGAAGAATCATAAATAAAGTACA----ATTAAACGCTATGTTATATGAGGCTGTGTTGGGTAGTAAAGTGGAGCAATGCAATTAA---------TGAGAAGCAATGAT-AGTCTAAGTTTGGAGGCAATACCGAAAGTAGCAAGAGGAGAAACAAAG-GATTAAATGAGTACCTAATAGAGTAATCCAGGCAATAAAATGTTACAGTTGT-TATGAATGGCAGTGCACCAAAGATGAAGAGAAAGTTGTAAGAAGT a score=23232.000000 s hg15.chr22 14864661 140 + 49476972 TTTTTTATTGTACCATTTAATCTAAAATCAGTCATGCTTGG-TACATGTTACACTTTCTTTCATAAATGTCAACAGGTCACGTTTTCAAAAGCATTGCTATTCAAATGTAGCCAATAAAATGCCTACTACTTTATTTGGCt s mm3.chr18 7421885 136 + 91041441 TTTTCAACTGCATCATTTAATTTCTAATCAGGCATACTTGGCTACATGATAAATATTTTCTTACACCTGTCAGTAGGTTATA-TTTCAAGGTTATTGCTATTAAAAAG----CAGTAGAATGCCTATTATTTTATTTGGAT s rn2.chr17 62278892 136 + 93540836 TTTTCAACTGCATCATTTAATTTCCAATCAGGCATACTTGGCTACGTGCTAAACTTTCTCTTACGCATGTCAGTAGGTTATA-TTTCAAGGTTATTGCTATTAAAAAG----CAATAGAATGCCTATTACTTTATTTGGAT a score=74808.000000 s hg15.chr22 14865104 698 + 49476972 CATT-TTCATTTTTCAATAGCATGTTCTTTAGACATCAATGTTCCATTT-CTTTTAAAATTTGAGAACATAGAGGAGGCATATTTCAAAAAGAGTTATACATGGTATGCAC-CATCAGATTGAGCCTCATCATGATATCTACTCATATCTGAGCAC------CAAAA----CTCACCAGTGGTTCTCTATTTTTGAACAAACCGATTATTTGTATTGAGTCTTCCTCATCGTCAATATCTTCAGGCATAGGAGGCAACATAGGGTCATAATTCTTCTGAGCCACACTACTACGTACAGAAAGCAAAGCCTGTAACATTCAAAGGTTGATTTAAATATATATATATGAAATATATCATTTCAAACACATCAAACTATAAAGAAAATCAAAACAGCATTACAGTTTTGACATAGTAGTGGTAATAAGGCAGTTACTTGAA--CAGGTGCCTCTTACAAATGGAAT-GGGAAAGAGTGCTTGTCC----AGAGAGCAGATGGCAGCTCTACTTAGCAGC-----CACCTCTGTCCCCAATGTCACTGATGTATGTAAAGAATTAACATATGATCTCCTCTAACCTGTACATTCTCTGTTTTATCCTTATAAGGGTATCAATTTGGGGCAAGAGTGCAGGGGATGTTATTTTTGGAGGAAGGGAGAACATGAGGGCTAAAGATGCACTGTCAATGAGAGTATGAGAATATTCGATATTTTT------TTCTTT s mm3.chr18 7422021 693 + 91041441 TTTTGTTAGTTCTTCGGAGTCATCTCCTTTGGATGAAGATGTCTTATTTATCTTTACGGTGTAGGGGCTCAGAAGAAGCATATCATAAACAGAAGTAT-AATGCTTTACGCTCATCTGATTTGG-CTCCCTGTGAGATCTACTCATGTCTGAAGAT-AGATGCAGAACAGTCTCACCAGGGGCTCGCTATTTTTGACCAGGCGGATTATTTTCACAGAGTCTTCCTCATCATCAATATCGTCAGGCACGGGAGGCAATACAGGATCATAACTCTTTTGAGCCACAGTATCATGTACTGACAGCAAAGCCTGCAACA-CCAAAGGTTCATAAAAC-----ATTCATCAGACATGAAACCACAAATACATTGAAGTACAAATAAAGACCAAACACTACTGTGCTCTTGTCATATTGATTG---TAAGGAAACCATTTGAAGCAGGGTGTCTTCAGCTCAGGGAGT-GGGGTGGGGCA---GTCCTGTGGGATTGTGGAAGGCAGACCTATTCTACTGCACCTGTACCTCCACTTCCAATACCACTGACATATAGCATCAATCTGCATTCCATTCTTTCTAACCTGTGTTTGCCCTA-GTAATTCCTAT-AGGGTAACAG-CTGGGGCAAA--TGTCATCAGTATTCCTTTTGGAAAAAATGAGGACAC---------AGACACATTGCCAATGTGTAGACAGAAGCTTGAGATACTGTC------TTCTTT s rn2.chr17 62279028 680 + 93540836 CTTC-TTAGTTATTCTAAGTCATATCCTCTGGATGCAGACGTCCCATTTACTTGTAAGGTGTAGGGACCCAGAAGAAGCATATCTTAAAGAGAAGTACAAATACTCTAAGCTCATCTGATTTGG-CTCCCTGTGAGATATACTCATGTCTGAAGACGAAATGCAGACCAGTCTTACCAGAGGCTCTCTGTTCTTAACCAGGCGGATGATTTTCACAGAGTCTTCCTCGTCATCAATATCGTCAGGCATGGGAGGCAATACAGGATCGTAACTCTTTTGAGCCACAGTATCATGCACTGACAGCAAAGCCTGTAAAA-CAAAAGGTTCATGAAGA-----ATTCATCAGATATGAA---------ACATTGAAGTACAAATAAACACAAAGCAGCATTGTGCTATTGGCATGTTAATTG---TAAAGAAACCATATGAGGCTGGGTGTCTTCGGCTCAGGCAGTGGGGGCGAGGCG---GTCC----------TGGAAGGCAGACCTACTCCATTGGACCTGCACCTCCACTTCCAGTACCACTGACATCTGGCATCAATCTGCATTAAATTTGTTCTAAAC-ATATATACTCTA-GTAATCCTTGT-AGGGTAACAG-CAGGGGCAAA---GTCTTGGGTATTCCTTTCGGAAAAAATGAGGACAC---------AGACACATTGCTGATGAGCTGACAGAGGCTTAAGATACTGCCCATGTTTTCTTT a score=15666.000000 s hg15.chr22 14865804 326 + 49476972 TACGATTTTTTCTCCTATTACCAGAAAACACAACAATGATCAATATGATGGATTCTTTTTTTCCCCCTCACTTTAATTGTTT-GTGTAATTGGTGACTACTATGTGTATAAAATAATAAAAGTAATTC----------------TGGACCAAAGATGAG-GAGAACACCAGAACTTTGACATGTCAATATTCACTATTCACTATTTTAGATGAGTGGGTTTTGGACTTTCAATGAACTTGACCCCtaataagcaacaccactcatttttcataaattactcaaaccaaaaac---ctagaa--------atcatccttgattcctctcctcttactgacattcccaacatccaat s mm3.chr18 7428881 258 + 91041441 TACATTTTTTTCTCTTATCAACAGAGAAT----------------TGGTCAATGCCATCATTCACTGATTTGTGACTTTTTT-GTGTAATGAG---------TACATATTAAAGAATAAAAGTATATTATAACATTGTCTCATATAGATCAATGAAGGTAGAAAATGCTGGAACTCTG-CACATC---------------ATATTTCAGATTAATGCATTTGAGAGGT--------------------------------CTCACTTT--CTGCACTATCCATACTGGATTCTAGCTAGAG--------ATCA--------TGTTCTCCTCT-----CCAGTCAGAATATCTAGT s rn2.chr17 62280298 263 + 93540836 TACATTTTC--CTCCTGTCAACAGAGAAT----------------TAGTCAATTCCATTATTCACTGGTTTCTGACTTTTTTTGTGCAATGGG---------TACATATAAAAGAATAAAAGTATTTCATAACATTGTGACATATAGATCAATGAGGCGAGAAAATGCTGGAACTCTG-CATGTC---------------CTACTTCAGATTAATGCATCTGAGAGGT--------------------------------CTCGCTG---CTGCACTGCCT------GACTCTAGCTAGAGGCCCAGAGATTC--------TGTTCTCCTCTTCCCTCCAGTCAGAACATCCAGT a score=21089.000000 s hg15.chr22 14866613 187 + 49476972 CATATCCTATTAAATCTACTTCCAAAATATACCTAA-----ATTT---TTTCTTTACTCTAGATCAGAGATTGGT-AACTACAATATctgtttttgtaaatcaggttttactggaacacagccatacttgttcattcatgcattgtttatggccgctgtcatgctacaatggcaaagtttagtagGTAGAACACAC s mm3.chr18 7429140 188 + 91041441 CATAGCTTACTAAATATACTTCTCAAATATATTCAAAACCTATTTCAATCTTCCTAATCCAACTCAAAGATGAACAAACTATACCACCTGTTTCTGTAAA----GTTTGATGGGA--GTTATAATACTATTGATTTCATATA--GTCTGTGGTAAATGTCATGCTACAAAACCAAGGTGGATAAGATGGGATAGAC s rn2.chr17 62280562 190 + 93540836 CATAGCTTATTAAATATATTTCCCAAATATATTCAAAACCTATTTCCATCTTTCTAATCTAACTCAAAGCCAAGCAAACTATACCACCTGTTTCTGTGAA----GTTTGATGGCA--GCTATCATACTATTGGGTCCCTGCACTGTCTATGGTTTCTGTTATGCTACAACACCAAGGAGTTTAAGATGGGACAGAC a score=10239.000000 s hg15.chr22 14867098 66 + 49476972 tcaACTTGAACAACTCTTTCTCATAGAGGTCTGGCCAAAACATC--TCATAAAAGCAGATCTCTCAGT s mm3.chr18 7429398 68 + 91041441 TCATCTTAAATAATTCGTTTTCATTGAGGCCTGGCCAAAACATCCATTACAGAAGGATGCTCCTTGGT s rn2.chr17 62280826 68 + 93540836 GCATCTTAAATAACTCCTTTACACAGAGGCCTGGCCAAAACATCCACGACAGAAGGATGCTGCTTGGT a score=2294.000000 s hg15.chr22 14870500 63 + 49476972 ctcaatagtg---------------------------gaaaaaataagcccaagatttaatgctgctatgatctcacctaaaaaataggt---------------------------------- s mm3.chr18 7430436 62 + 91041441 CTCATGACTG---------------------------TTAAAAATAAACCAAAGATTAAAAGCTGTGAC-ATGCTAACTGAACAAAATGT---------------------------------- s rn2.chr17 62281857 123 + 93540836 CTCATGACTGGGTAGGGTTACCTGAAATATAGCATTTTTAAAAATAACCCCAAGATTAAAAGCTGGCAC-ATGCTAACTGAATGAAATGAAAAAGTAAACCAGGGGGGATGGAAAAAAAAAGTA a score=6801.000000 s hg15.chr22 14870884 75 + 49476972 agcctctgaaagatcaaaa-----tgtttccaagtaatttaactgtataacaaaatgaagctcaacaataCTATCTATAG s mm3.chr18 7430498 74 + 91041441 AACCTCAG-AGGGCCGAAA-----CTTGCCCAAGTAACTTAATTGTATGACAGAAAAAGAATCACAGATATTGACTATAA s rn2.chr17 62281980 77 + 93540836 AACCTCAG-AGAACCAAAACTCATCTCATCCAAGTAACTCAATTG-ATGACAGAGAAAGAACGACAGG-ATTATCTATAA a score=1129.000000 s hg15.chr22 14871464 220 + 49476972 aaacacaaaaattcccagcatccaacaagataaaactcatggttactggtagtcgatcaatataaaactcacaatgattcagaattactaggtatgcaaagaaaacagaaaatactgctcctaatgaaggaaaaaa-aaaacaatgaaaccaaaccctgaaattacacagatgataaaccagacaaaaccaaaccctaaaattacacagatagcagacaag s mm3.chr18 7430572 157 + 91041441 GAACACTACTGTGCTCAATATCAAGCA--------CACATG-----------------AATATAGACC-------AATCAAAACGTACCAGACATGTCAAAAAAA------GCATTACTCATAAGGATCAAAAAACTGAAGAAACAGAACAAAATTCTGAAATTACTCAGAGGTATAATCAGCTAAAAACAAT--------------------------Ag a score=3576.000000 s hg15.chr22 14871686 21 + 49476972 tactaaaacttattattataa s mm3.chr18 7431477 21 + 91041441 TATTAAAAGCTATTAATGTAg s rn2.chr17 62282802 21 + 93540836 TATTAAAAGCTATTACTGCAg a score=108764.000000 s hg15.chr22 14871937 1180 + 49476972 ggcttagtgatc-tggggaactactttaaatggcctaatatatgtgttaactggcatctccaaagaaagggggcagttgctgaaaactatttaaagaaatatggcagaaaatagtccaaatatgatgaaaaaactataaaaccacatgttcaagaaactcaatgtacccacacacac---agaaaacatacaataccactaaattgcttaaaaccaggaagaaaatattaaaatcat---ccaaaggaaaaaaaca-------catta--tatataaaagaataaggattaaaaactacagcacacttctcatcagaaacaatg-tgggccacaaaacaatggagcaatatctttaaaatactcagagaaaaatactgttgacttagaattctatacctagcaaaaatatcttttagaaatgaaggggtattgaaaactttttaaagatatgcaaaagctaaaagaattcatcaccagcagacttgcattgcaagagatgtcacagaaagacttcagatgggaggaaaatgttgacagatggaaatgtgagtacatacagaggaataaagaacactgggaatgCCTACTATCTTTGTATCTATGGCAACTATCTTGTACATAGTAAAATAGAGATAGCTGAATAAAATGTTTTTAAATAAAGCAATTTTGATAATTGACAGGCAATATTAAGAACATCAGCTAAATATTTTTTTCT----CCTTAGCTTTGTTCCATGTCTACATTCCAAAACAATTTCATAGGCattattttcataattttaa-----tttattttacaattattGTTGAATAGCAACATTTTTAATTTTGG----ACAACTAAAACAAATTTTTCATTCTATTATCCTGTTTTAACTGAGTTGATTTTATTCTTTAATATACAGACTTGCCTTTCAAAAGGCAATACTTAAATGGAAATTTTATTTCCGCATGCCAGAACCA------CCAATCACAACTGACG-GTTTACCTGTTGCTCACA--AGAATCTGCAGGAAATTGAACCCTAGGCCTTGCAACTCATTGGACTCACAAACACTCACTGCACTGGACCCCCTGGGGTCAACTTTATGTCATAAGTATCTGTCAGGTTCACAGAATTAAGTGTCCAGCTTATAAGGATGAGTAACATTGATTTATCCCTCCAGAAGGAAGCTTAACTTTTTCCTTCAGTTTGCTTTAATGAAGCCTCATCC s mm3.chr18 7432134 1060 + 91041441 GGAATAATAGAC-ACGTGTGGGATTTTAAATAGTCTAAAATAGGTACT---TAGACTCTCTGAAGAAGTA----------TGAACTatgtttcagaaaatatgg-aaaaaatgtcccaaatttagtaaaaaaataataaactcacatgttcatgaagctcaa-gtacctgaatacatgtaaagaaacattaaata-----aaactgcttaacatatga--gaaaattctaaaatcatgtaccagaaaaaaaaaacaaacagcacatta--cacataaaggagtgaagatgaaa---------gtaacttctatcagacataaaa-taatgtatagagcaacagcacaacacctttaaaatacct-gaaaagaatactgtgaagctagcatcctatacccagcaaaaatatctctcaGCAGAGAAGA------------CTTTTGATAAGATGGGAGTTTTTAATGA----ATCAGCAGCAGACCTCCTTTAGAAGAAGCT-------AATGCTCTGCCCAG------------AACAG--TGAAAGATGAGCAA----------------------TGAAATGCTCACT------ATCTCAATGTCAACGACATCCTACATTGAGAACAATAGATGACTAATTAAGACATGTTTAAATAA--CAGTTACAATA--TTATAGGTAATATTAACAACACCAGCTACCTATTTGGGGTG-GGAGTTGGACTTATTTCCATGTCTAAATTCAAACACAAGTTTGTAGATTTCAAGTTCATCGTGCTTAACAGTTTTGCTTTAGAAATATTGTTGCTTAGCAATATTTTGTACTTTG-----ACAATGAGAAGGCATTTGACATTCCATTTTCCTGCTCTTACTGAGGTAATTTTATTCTTCATCATATAGATTTTCCTCTCAAAGGGCAGACGTTAAATAAGAATTGTGTTTCCATGTGCCATCATCA------CCAATCACAGCTGATGCGTTTGCCTGTTGCTCAGA--AGCATCTACAGGAAATTGAACACCAGACC-TGTAATGTG----------------CCACTGCTGTGGA-CTCCTGGAGTCAGGTCTACGCC-TGAGTGTCTCTCAGGTGCACAGA------TG-CCTGTTTATTAAGAAGAATAG-------------ATCCAGAAGGAAGCTCAAC-TTTTCCTCCAACTTCCTTTAGTGAAGCCTCATCc s rn2.chr17 62283376 1061 + 93540836 ggaataaCAGGTTAAGTGTCGGATGTTAAATAGCCGAAAATAGGTACT---CAGACTCTCAGAAGAAGTA----------TGA-CTATTTTTCAGAAAGTATGG-AAAAAACGTTCCAAATTTAGTGAAAAAATAATAAACTCACATGTTCATGAGGGTCAA-GTACCTGAATACATGTAAAGAAACATTAAATA-----AAACTGCTGAAAACATGA----------CAAAATCATGTACCAGGAAAAAAAAACCCAAAACTCATAAAATACATAAAAGATAGATGATGGAT---------GTGACTTCCATCAGCCAAAAAAATAAC--ACAGAGCAGCAGTGCGGCACCTTTAAAATATCT---AAAGGACACTG--AAGCTAGCACTCCATCCCCAGCGAAA-TACCTCACAGCAGAGAAGA------------CTCTCAGTAAGATGG-AGTTTTTAGTGA----ATCAGCGGCCG-CCTCCCTTGGAAGAAGCG-------AATGCTCTACCCAG------------AGCAG--GGAAGGACCAGTG-----------------------TGAAATGCTCACT----CTGTCTCAGTGTCAGCCACACCCGGCACTGAGAACAGCAGACGACTCATGAAAACATGTTGAAATA------TTACAATA--TTATAGGTAATATTAACAACGCCAGCTACTTATTTTGGGGGCGGGGTCAGACTTATTTCTATGTCTAAATTCAAATACGAGTTTGCAGATTTCAAGTTCGTTACTCTTAACAGCTTTGCTTGAGGAATATTTCAGCTTAACAGCGTTTTGTACTTTGGAAGTACAATGAGAAGGCATTTGGCACTCCATTTTCCTGCTTTCACTGATGTGATTTTATTCTTCAACATAAAGAGTTTCCTCTCAAAAGACAGAACTTAGGTAAAAATTGTGTTTCCATGCGCCATAACCATAACCACCAATCACAGCTGATGGGTTTGCCTGCTGCTCAGAGAAGCATCTACAGGAAATTGAACACCGGACC-TGTAATTTG----------------CCACTGCTGTGGA-CCCCTGGAGTCAGCTCTAGGCC-TGAGTGTCTATCAGGTGCACAGAATTAAACG-CCTGCTCATCAGGAAGAATAG-------------ATCCAGA-GGAAGCTCAAC-TTTTCCTCCAGCCTCCTTTAATGAAGTCT-ATCC a score=25636.000000 s hg15.chr22 14873180 214 + 49476972 ACAAATCTTC-------TCATTTTATTGCCTTTTAAAAAAATCTACCAAATTTTCCCTGACTTCCAAAATTATAATGCTGTATTCTAGAGATGATGTCACTTCATTGTTTCATCAAAAGTGAGCCCCTGGAATGATGACTCATACAGGTTAATTTGCCTTTAATGTGGCAATTTG---ATGCTTAGAAATGGTTCTGATTTATTAATGACT--ATCTTTGTTTCCC s mm3.chr18 7433252 204 + 91041441 ACAAATCtttttattttttattttagtttttttttt--taatCCTCCCAATTTCCCCTGACATCCTAAATTATAATACCATGTTCCAGAGTGTATATCACATTACTGCTTTACCAAAA-TGAGCACCATGA--------TAATGCAGACTAATTTGCCTTTACTGGAGTCATGTGTACATGCTTG-----------CATTCACTAATGACTTTGCCTTTGTTTGCC s rn2.chr17 62284510 199 + 93540836 ACAAATCTTT--ACTTTTTATTTTAGTTTTTTTTTC---AATCTGCCCAATTTCCCCTGACACCCTAAATTATAATGCCATGTTCTAGAGCGGGTAGCACATTACTGCTTTACCAACA-TGAGCACCAGGA--------TGATGTAGACTAATTTGCCCTTACTGGAGCTGTGTGTGGATGTTTG-----------TATCCACTAATGACT--GCCTTTGTTAGCC a score=21038.000000 s hg15.chr22 14873659 288 + 49476972 CTGGGTATAATCTTTCAATTTTT--GACAGTTCTCAGGTGACACTATTGTTACAGAATATCAAGTCATTTTCTAACTATTAAAGACTTGATGGTAACAGGTTATACAAAAGAAGTGTTGGCATTCTTCTGAACAGAGCAAGAGATTCCTAAAGAGTAAAATGAACAAAATCGCAATCTTATACTATTATGACTTAAAGAATATGAAAGAAAAGTTTGAATGTCATATAAACGTACAGAATTGTCTTATATGAAGAGACAAAGGCTATAATGGAATAAAAATTTCATCAAA s mm3.chr18 7433494 223 + 91041441 CTGGACATAATCTTTACATTTTT--GACAGTCCTCAAGTAAAGTTAATGCTGCAGAAGAACAAACCATTCCCTCGTTGTGAAAAGCTC-ACAGCCATGG-----------AAAGAGTGAGCACTCTTCAGAA---AGTGCGAGATTACAAAAG-GCAAGGTTAACT-TGGTACAATTGTAGGC---TATAAATGAGAGGACCTGAACAA---GTTTAA--------------------------TTATATGAGCAGAT----------------TAAAAAGCATGTAAAg s rn2.chr17 62284747 239 + 93540836 TTGGGCATAATCTTTACTTTTTTTTGACGGTCTTCAGATAAAGTTAATGCTGCTAAAGAACAAACTATTCCATCACTATGAAAAGCTC-ACAGCCATAGGCCACA-GGAGAAAGAGCGAGCACTCTTCAGGA---AGTGAGAGGTTCCAAAAG-GCAAGATGAACCAGGGTACAGTCATAGGC---TATAAATGAGAGAACATGAATAAAAAGTTTAA--------------------------TTATATGCGCAGAT----------------TAAAAAGAATGTCAAg a score=2126.000000 s hg15.chr22 14874649 62 + 49476972 TAACTTTAATGATTATCTTATTTTAGGAATAGTCACTTTGAATATTTAAGTTTATCTATAAA s mm3.chr3 19650287 62 + 160674399 TACTTTTACTTACGAATTTATTTTGGAAATAGGTATGCTGAATATAGAAATCCATGTACAAA a score=8745.000000 s hg15.chr22 14879305 169 + 49476972 ATCTTATTAAGGA-CAAATATCATAAATCATGTATATTAATAAATGATTCCTTCTAACCTCACTTAAGGATTTTAAAATATTACTTCCTTTATGGGTGCGT----------------GTTTGTGTGTCTGTATGTGTGTATTCCTGTCTTTGTGTTTCAAATGCTTTTCTATTCCATATTCACATA s mm3.chr18 7434182 138 + 91041441 ATCTTACTAAGAA-TAAATATC-TAGGCCATTTGC----ACAATGTATTCACCAC--------------GTTTTAAAA----ACTGCTGGGgtgtgtgtgtgtg-------------gtttgtatgtgtgtttgtgtgtgtatgtgtTTTTAGGTATCA-----------ACTCCCAGGCCACAAA s rn2.chr17 62285364 148 + 93540836 --CTTACTAAAAAGTGCACATC-TAAGCCATTTG-----ACAGCATATTCATCAT--------------GCTTTAAAA----ACTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtTTTTAGGTATCA-----------ACCCCCAA-CCGCAAA a score=12366.000000 s hg15.chr22 14880143 198 + 49476972 -CAATAATATTCTTATGGTTCAACTTTTTACACTTAAATTTTTAATATATTTGGAGTTCACTCCAGTGGCAACTGTTCTA--TTTTTATCCGAAAGTAT-TAGTTATTCCAAGACCACATATTGAAGTTGTCCCTCAAGCTGCCCATCCCCCATGCTTCCTTCCACCCATCCCATACTCTTTCATTAGGACCTCAATCGTGT s mm3.chr18 7434363 169 + 91041441 -CACTAATATTTTTGTGGTTTA-----TTATAT--ATTCCTTGAATTTATTTGGAATTCATTGCAATGTGGATTTTTCTTACTTTTTGCCTC-GATTATACATTCATCTCAAGAATATGTGCTA-ATTTATGCCTTAAA-----CATGACCCTCG---------GCCCACCTCA---------ACCAGGGCCACAAGCATGT s rn2.chr17 62285556 167 + 93540836 CCACTAATATCTCTGTGGTTCG-----TTATAC--ATACCTTGAATCTATTAGGAATTCATTGTAATACGGATTTTTCTGACTTTTTGCCTCTGATTATGCATTCATCCCAACAATATGTGCTG---TTATGCCTTAAA-----CATGACTCATG---------GCCCACCTTA---------ACCAGGGCCATA-GCAGT- a score=16521.000000 s hg15.chr22 14880651 502 + 49476972 TGTtctatcatctgaattatttctacaggct-cctattggccttccttcattcagcattgcatt---tctcccattctacaccttccaatgcctcaaaaggctggtctacatatggagtgacatgtcacttcttccttcaaatcctt-----tgaatcactttccaC-------------------TTTTTAATAAGCTTACGATTTCAGGTgtggccatataatttatcctccaaatagggaaacaattgaaagtgggagaaaggctatttatttgtaataatgctggaactgcaggcatgaaacagacggtcctggacataccCTACTCAAAAGGCTCCAAACTGTTACCACTTCCTCCTTCGCAATCCAACCATTCTGAGGCTGGTTTTGCATTTCTACATCTTCAAATTTAAAGTTTTCTTTACGGGACTTTACATGCTCTTC-CCTTTACCGAAATGGTTTCTTTTTCACATCGCACCCCCAACCCA-TTTCCCACTTCTTTGTGCCCTTCTCGTTCCCTCAAACTC s mm3.chr18 7434532 406 + 91041441 TGCCC------CTGAGTCCTCCCAACAGACTCACAGCAGGGTCTCCTC--TTTAGTAGGACTTTTGTTGTCTCACTGCACTCCACAGA-------AGGAGAGTG-----------------CCtgtcacttttctacttaaatccttgtcatggagtccccctgcactcagaataaaaatccaaatttcttaaaatgcttacaGCT---AGGGTGGTCTTCTCGTTCATCTCCTTCATAGAGTAGACATGGAAAGTAAAAGAAAGACCACTGA----CAGCAGCACGGGAATTGCAGGT----------------------CACACTGGGCAAG-----------------------------CTCAGTGC------------------TATGCTTTACAACCTCTTCA----TTAAGATTTC-------------ATGTACCATTCAACTTTACCTAAAACATTTACTCTCCACCCTCCACCCCCAACCTAACTATGAATATCTCTGCCC-CTTCCCTCTACCTCATACCC s rn2.chr17 62285723 348 + 93540836 TGCTC------TCGAGTCCT---GACAGAC--ACAGCTGGCTCTCCTC--TGCAGTAGGGCTTTCGCTGTCTCACTGCACTCCACACA-------AAGAGGCTG-----------------CCtgtcactttgctacttacatccttgtcaaggacttctcctccactcagaatgaga-tccaaatttcttaacatgcttacaGCT---AGGGTGGTCTTATCGTTCTGCTCCT--------------------------------CTTGTGA----CAGCAGCACTGGAACTGCAGGC----------------------CACCCAGGGCAAG-----------------------------CTCAGCTC------------------CTTGCTTTACAACCTCTTTA----GAAAGATTTC-------------GTGTACTATTCAACTT--------------------CACCCTCCACCCCCAACCTA-CCATGCTCATCTCTGCCCGCTTCTGTCTACCTCACACCC a score=12185.000000 s hg15.chr22 14881153 220 + 49476972 CATGATGAGGTCTCAACTTATATGGCACTTCCTCTGTAAAGATTTATTTAACACTCTCCCCCTGCCCAACT---TTGGGTTTAGCACAATTC----CTATGTATTTCATATCATTTCCATG-CACTTCCT----CTTTTAAATCCAGTATTTCTCCTA--TCA------CCTT------------CACCAGTGTACATATATCTTCTATAATCTGCATCCGTAGGTCCTGACACACAGTAGGCATT-AATAGA s mm3.chr18 7434829 232 + 91041441 TTCATTAAGATTTCATGTACCATTCAACTTTACCTA-AAACATTTACTCTCCACCCTCCACC--CCCAACCTAACTATGAATATCTCTGCCC-CTTCCCTCTACCTCATACC----CAAAGCCACTTCCTCAATTATTTATTTCCCTTACTGCTTCCAAGCCAAATTGGCATT------------CATTA-TTCAAACAGATCCTCTACAAGTTATATCCAGAGAATCTGGCATAAAACAGGCATTGAATAGA s rn2.chr17 62285982 220 + 93540836 TTTAGAAAGATTTCGTGTACTATTCAACTT---------------------CACCCTCCACC--CCCAACCTA-CCATGCTCATCTCTGCCCGCTTCTGTCTACCTCACACC----CAAAGCCACTCCCA----TATTTATTTCACTTACTGCTTCCAAGCCAAACTGGCATTTCCTACCATCTTCACTA-TTCAAACAGATCCTCTACAAGTTCCATCCAGATAATCTGGCACAAATCTGGCACTGAGTAGA a score=2000.000000 s hg15.chr22 15007600 50 + 49476972 CCTGAGAAGAAATTCTAGAGAAGGATGATGAAGAGAAAAATGGCTTTTTT s mm3.chr10 48386779 50 - 130738012 CCTGAGACAGAAACTCAGAGAAGAATGACAATAAGAAGGAACGCTTCTCT a score=4895.000000 s hg15.chr22 15008473 39 + 49476972 GAAAAA-----------------AATAATTAGGAGATACTCGCTTTCTAGAATGCT s mm3.chr17 21260779 39 + 93529596 GAAGAA-----------------TATAATTAGAATATACTCACTGTCTTGAATCCT s rn2.chr1 222219910 56 - 276301343 GAAGAAAAAAATTTATGGAACTGTAGAATTAGAAGACATTCACTGTCTTGAAACCT a score=111629.000000 s hg15.chr22 15008975 1414 + 49476972 TCTTggaccagaaagattggtgtcacttgggagcttgttagaaattcagaaactcaggttttacctcaggtttcttgaaacaaaatctgcat---aaaaagatctccagtttattgttgtacacattaaaatttgagaggtaCTTTATAACTAAGCCTGAATTTTTTATCTGAGAAATATACAGAACTTATACTGTATGATTAAATCAAGCACTCAAAAATGTACATGTCTATGTTCCTGTTGTTAATTTTGT----ACTTTATCATTCAAAAAATATCATCAATACACTACACTGGTATTGTGAATCTTATGCTCTCTTTTCTCAGAGATAGAGAATACAACAGAATATTTTTTGT-TGTGAGTTATTTTATAGGACATTTTCAGTCGTATAAGTCAGAATCAGTTCTCT-TCACTCATTTTATCTTGAGTCAATTTAAGAATTCTGTCCATGGCCAC---------------------------TTGAAGTGTGT-------GTGTGTGTTT---TCAGGGACTGTTGACATTCAGGGATGTAGCCATACAATTCTGTCTGGAGGACTGCCAATACCTGGATGCTGCTCAGCAGAATTTGTATAAGGATGTGATGTTAGAGAACTACAGAAACCCGGTCTTCTTCGTTGAGGATAACTTCAATATA-GAATTCCTAATTTACCCTAAAGGTTTCATTTTCTTCCTTTGTAGGATGTGTTTTGGTAA-TTTCTGCTTTGCATGAGTGAATTTCAGATCCCTGTTTTCAAGACAATCTTGAGGATTTTTTGGTGTGGAAAATAAATTCTTCAAGTTGTTTCATTTTGACCTGAATTTTCCCCTTTCCTGAGCTTATCTATAATATTCACTCTAGATA--AGTGGTAATTTCAGAAATTTAGTGGCATAAAATAATGTTGTCCACAA--CTTAAAATTCAATTGccaccaccagtttttgattcagtaatactgaggag-tgaaacagaggacccagatatttaatgtactttctgaatatgctaaaggttctgTCAGTAAAAAGTATTTTG-GAATTAATTTTCTAGAATCCTCTATTATGTCCTCTTTTCTCTGCTTAGCACAGTATTAGGTTGGTAA-ATGGAGAATCCCAGGAAAATT----CATGCTCATGCTGCTTTTTAAAATAAAACAGGTATTGTCTTCTCTAAGCCAGACCTGGTCACCTGTCTGGAGCAAAGGAAAAAGCCATGGAGTATGAA---------------------GCACCCAGGTAGGTGAAAGCGAATGAAGAAGAGGATGACATAGATGAGACATCCAAAGGCCGAGAGGAACCCGGACTTTTACATGTGATGTGGGAAGCTGTGCTCCAGTGGAAATCGTTTCTGAAAAGCCTGGGTTTTTTCACTTGTTCTCACATTGGGGCATCC------TCTGTCCCATGCTCTCTAATGACTCTACATTT---------TCTTCCATAATTTTTCTTCAGATTTGCAGTGAG s mm3.chr13 51925104 1405 - 116242670 TCTTGGTGCACTGGCATTAGCATCATTATTGAACTCTGTACACATTCAGAAATGTAGACCTCTGC-CAGAGCGGATACATCAGAATCTACATTTTCATTGCATTTCACATGCATGACTGTGCATATTAAATGTTGCTAAGTACCTTCTCTCTCGTCCTAACTTTCTCCTGTGAGAAATGTAGGATG--TGGGGTGTA----TAAAATCAGCGT-----AAGACAAATGTGTATGTTCCCGTGAATGCATTCATTGCCTTTTTATCTTTCTTAAA----AGTCAA---ATAGGAGTGGTAGTAGGATCTCTCCATTCTCTTTTCATGGAGACGGGTCAGGGATGAGGTCATGGACCATATCAGAAATATCTTAGGGG----TGCTACTCACCTGTGGCGGA---AGTATTCTAGCTCTCCTCTTACCCTGTACAAAGCTTGGAATTGTGTTCCT-GCAGTTTATGTTGTTAT-ATTATGACTTTAA-TTGATATGTAT----TTCATTTATTTTtatttcaggaaatgctgtcattcagggatgtggccattgatttctctgcagaggagtgggaatgcctggagcctgctcagtggaatctgtacagggacgtgatgctggagaattacagccacctTGTGTTCCTGGGTGAGGTTCACGTCCATAAATGAATTCGTATTTCACCACCAACATGTAATTGTCCCCACTTGTGGAACATTCCATTGGGGCTTTGTGCCATGCAGCAGTGACTTATGTA--CCTGCTT-----------TTGCTGATATTCT---------AATAAATATTGTA--TT------TCTT-CTTTTAATATGGCTATTTGGTTTGTTT-TTTGGAATATGCATCCATTATCCTGGTTGTAATTCTATAAACCCAGTAGCCTGAGGT-ATGGGGCACACAT--GTTAAAGTAATGTTTCACCCTTCAGCTTTTGTGTT-----TACTGTGTAA-TGGAGCTAAGGATCTTCAGATTAGAGATTCCACCTACATATTCCACATGTGCTTCT--CAGGAAACATTTAATGAAGTAATTTTCTACAGTTCT--------TCACCTTCTCTC-----AGAAGATCAATAGCGGAGTAGGATGTTAATTCCCAGGAGAACACACAGACATTGTTGTTTCCTTTTCCCAC-AAACAGGTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAGGTGTGTAGGAATTGCAGGGTCAGAGGGTA----GAATGGGAGATTAGAGATCCAACAGAAAGCCAGGCTTTCTCCC-------AAGATAACCTGCTCTGGTGGACGTCGTATGTCAAGATCTCCTTTTATGCCCTTTACTGTCACAGAAGGACATCTGCCAGGTCTCTATGGTACTTT---AAGTCTCTAAGCTTGGTTGGCCCCCTTCAGTGAGCTCTGCTTATGTTTGCCATGAG s rn2.chr17 88375585 1391 - 93540836 TCTTTGTGCACTGTCATTAGCACCACTATCGAATGCTGGACAAATTCAGAAATCTAGACCTTTGC-CAGAGCTAATAGGTCAGAATCTG--TTTGCATTGCATTGTACATTCATGATTATTCA-GTTAAATGTTGATAAGTACCTTCTCTCTCAT---GACTTTCTCCTGTGAAAAATGTATGTAA--TATGGTGTA----TAAAATAAGCAT-----AAAACAAATGCATATGTTCTTGTGAGTGCATTCATTGCCTTTTAATCTCTTTTAAA----CATCAA------GAAGAGATAGTAGGATCTCTTCATTCTCTTTCTATGAAGATAGGTCAAGGGTGAGCTCATGGACTCCATTAAAAGTATATTAGGAA----TGTTACTCACCTGTGGCAGA---AGTATTCTAGCTATCCTCTTATCCTGTGCAAAACTTGGGATTGTGTTCATAGCTGTTTTTGTTGTTGTTATTATGGTTTTAAATTGATATGTATAATATTCATTTCTTTTTCTCTCAGGAAATGCTGTCATTCAGGgatgtggccattgatttctctgcagaggagtgggaatgtctggaccttgctcagtggaatctgtacagggatgtcatgttggagaattacagcaacctTGTGTTCCTGGGTGAGACTCACTTCCATACATG--------TTTTACCACCAACATGTA----------------GAACATCCCATGGGGG-TTTGTGCCATGTAGCAGTAACTTTTGTATACCTGCTT-----------TTGCTGATATTCT---------AAGAAATATTTTA--CTGTATTCTCTTGTTTTTAATATGGCTTTTTGGGTTGATT-TTTGAAATACACATCCTTCATTCTGGTTGTAACTCCATAAACCCAGTAGCACGAGGC-CTGGGGCACACATTAATAAATATAATGTTTCATCCTTCAGCTTTCATGTT-----T-CTGTTTAAATGCAGCTAAGGATCTTCACATTATAGATTCCACCTACATATTCTATATGTGCTTCT--TAGGAAACATTTAATGAACTAATTTTCTACAGTTCT---------CACCTTTTCTT-----AGAAGATTAATAATGGAGTAAGATGTCAATTCCCAGGAGAACA----GACATTGTTGTTCCCTTTTCCCAC-AAACAGGTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCACCAGCAGCTACCATGCACCCAGGTATGTAGGAATTAGGGGGTCAGAGGACA----GAGCGGGATATTAGAGATATGATAGAAAGCCACGCTTTCTCCTGATCATGGAGATAACATGCTCTGGTGGAAGTCATATATAAGGATCTCCTTTTATGTCCTTTGCTGTCACAGAAGGACATCTGCCAGATCTCTACGGTGCTCT---AAGTCTCTAAGCTTAGTTTGTCCCCTCCAGTGAGCCCTGCTTGTGTTTACCTTGAG a score=2000.000000 s hg15.chr22 15007600 50 + 49476972 CCTGAGAAGAAATTCTAGAGAAGGATGATGAAGAGAAAAATGGCTTTTTT s mm3.chr10 48386779 50 - 130738012 CCTGAGACAGAAACTCAGAGAAGAATGACAATAAGAAGGAACGCTTCTCT a score=2201.000000 s hg15.chr22 15008473 39 + 49476972 GAAAAAAATAATTAGGAGATACTCGCTTTCTAGAATGCT s mm3.chr17 21260779 39 + 93529596 GAAGAATATAATTAGAATATACTCACTGTCTTGAATCCT a score=15965.000000 s hg15.chr22 15008975 1414 + 49476972 TCTTggaccagaaagattggtgtcacttgggagcttgttagaaattcagaaactcaggttttacctcaggtttcttgaaacaaaatctgcat---aaaaagatctccagtttattgttgtacacattaaaatttgagaggtaCTTTATAACTAAGCCTGAATTTTTTATCTGAGAAATATACAGAACTTATACTGTATGATTAAATCAAGCACTCAAAAATGTACATGTCTATGTTCCTGTTGTTAATTTTGTA----CTTTATCATTCAAAAAATATCATCAATACACTACACTGGTATTGTGAATCTTATGCTCTCTTTTCTCAGAGATAGAGAATACAACAGAATATTTTTTGT-TGTGAGTTATTTTATAGGACATTTTCAGTCGTATAAGTCAGAATCAGTTCTCT-TCACTCATTTTATCTTGAGTCAATTTAAGAATTCTGTCCATG-------------------GCCACTTGAAGTGTGTGTGTGTGT------------TTTCAGGGACTGTTGACATTCAGGGATGTAGCCATACAATTCTGTCTGGAGGACTGCCAATACCTGGATGCTGCTCAGCAGAATTTGTATAAGGATGTGATGTTAGAGAACTACAGAAACCCGGTCTTCTTCGTTGAGGATAACTTCAATATA-GAATTCCTAATTTACCCTAAAGGTTTCATTTTCTTCCTTTGTAGGATGTGTT-TTGGTAATTTCTGCTTTGCATGAGTGAATTTCAGATCCCTGTTTTCAAGACAATCTTGAGGATTTTTTGGTGTGGAAAATAAATTCTTCAAGTTGTTTCATTTTGACCTGAATTTTCCCCTTTCCTGAGCTTATCTATAATATTCACTC--TAGATAAGTGGTAATTTCAGAAATTTAGTGGCATAAAATAATGTTGTCCACAACTTAAAATTCAATTGccaccaccagtttttgattcagtaatactgaggagtgaaacagaggacccagatatttaatgtactttctgaatatgctaaaggttctgTCAGTAAAAAGTATTTTG-GAATTAATTTTCTAGAATCCTCTATTATGTCCTCTTTTCTCTGC---TTAGCACAGTATTAGGTTGGTAAATGGAGAATCCCAGGAAAATTCATGCTCAT----GCTGCTTTTTAAAATAAAACAGGTATTGTCTTCTCTAAGCCAGACCTGGTCACCTGTCTGGAGCAAAGGAAAAAGCCATGGAGTATGAA---------------------GCACCCAGGTAGGTGAAAGCGAATGAAGAAGAGGATGACAT---AGATGAGACATCCAAAGGCCGAGAGGAACCCGGACTTTTACATGTGATGTGGGAAGCTGTGCTCCAGTGGAAATCGTTTCTGAAAAGCCTGGGTTTTTTCACTTGTTCTCACATTGGGGCATCCTCTG---TCCCATGCTCTCTAATGACTCTACATTT---------TCTTCCATAATTTTTCTTCAGATTTGCAGTGAG s mm3.chr13 51925104 1405 - 116242670 TCTTGGTGCACTGGCATTAGCATCATTATTGAACTCTGTACACATTCAGAAATGTAGACCTCTGC-CAGAGCGGATACATCAGAATCTACATTTTCATTGCATTTCACATGCATGACTGTGCATATTAAATGTTGCTAAGTACCTTCTCTCTCGTCCTAACTTTCTCCTGTGAGAAATGTA--GGATGTGGGGTGTATAA---AATCA-GCGT-----AAGACAAATGTGTATGTTCCCGTGAATGCATTCATTGCCTTTTTATCTTTCTTAAAA----GTCAA---ATAGGAGTGGTAGTAGGATCTCTCCATTCTCTTTTCATGGAGACGGGTCAGGGATGAGGTCATGGACCATATCAGAAATATCTTAGGGGTGCTACTCACCTGT----GGCGGAA---GTATTCTAGCTCTCCTCTTACCCTGTACAAAGCTTGGAATTGTGTTCCTGCAGTTTATGTTGTTATATTATGACTTTAATTG-ATATGTATTTCATTTATTTTtatttcaggaaatgctgtcattcagggatgtggccattgatttctctgcagaggagtgggaatgcctggagcctgctcagtggaatctgtacagggacgtgatgctggagaattacagccacctTGTGTTCCTGGGTGAGGTTCACGTCCATAAATGAATTCGTATTTCACCACCAACATGTAATTGTCCCCACTTGTGGAACATTCCATTGGGGCTTTGTGCCATGCAGCAGTGACTT--ATGTACCTGCTTT-----------TGCTGATATTCT---------AATAAATATTGTA---TTTCTTCTTTTAATATGGCTATTTGGTTTG-------TTTTTTGGAATATGCATCCATTATCCTGGTTGTAATTCTATAAACCCAGTAGCCTGAGGTA-TGGGGCACACATGTTAAAGTAATGTTTCACCCTTCAGCTTTTGTGTT-----TACTGTGTAATGGAGCTAAGGATCTTCAGATTAGAGATTCCACCTACATATTCCACATGTGCTTCT--CAGGAAACATTTAATGAAGTAATTTTCTACAGTTCT--------TCACCTTCTCTCAGAAGATCAATAGCGGAGTAGGATGTTAATT-------CCCAGGAGAACACACAGACATTGTTGTTTCCTTTTCCCACAAA-CAGGTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAGGTGTGTAGGAATTGCAGGGTCAGAGGGTAGAATGGGAGATTAGAGATCCAAC-------AGAAAGCCAGGCTTTCTCCCAAGAT-----AACC--TGCTCTGGTGGACGTCGTATGTCAAGATCTCCTTTTATGCCCTTTACTGTCACAGAAGGACATCTGCCAGGTCTCTATGGTACTTTAAGTCTCTAAGCTTGGTTGGCCCCCTTCAGTGAGCTCTGCTTATGTTTGCCATGAG a score=7153.000000 s hg15.chr22 15010389 133 + 49476972 AGCCAAAATTCTCTTTATGGCTTATAAAGGAGTGCACAATCT-GAC--TACTTTTATTGCTTTTGGGGATATACAAATAGCTGT--ATACTTTTTAGAAACCCTGTGTT---------TAACAATTT----------TTAAGTTCTCTTTCTGCATT s mm3.chr3 36023215 155 + 160674399 AGCTGATATCTTCCCCTTCACCTGTGG-GAGCTGTGTAAAGG-GACAGTTCTTTCGTGGTGTTTGGGGGCCTCCGAAAACCTTTGGATATTTCTTATGACCTCTTTGTTGGTATACTCTAATAATTTAATGTGATAAAGAAGTTTTCTCTTAACATT s rn2.chr2 118657295 137 + 246339213 ACCTGACATCGTCCCCTTCACCTGTGGTGAGCTGTCTAAAAGTGACAGTTCTTTTGTGACCTTTAGAGGCCTCAGAAAGTCCGTG-ATAGTTCTCATGACCT-------------------TAGATTAATGTGATAAAGAAGTTTTCTCTTAACATT a score=2064.000000 s hg15.chr22 15010587 41 + 49476972 CATATGTTGTATGTTTTCTGCTTTATAGTTTCTTATTTTAT s mm3.chr17 71967866 41 - 93529596 CATATGTTATATCTTTTAAATTTCATGGTTTCTTGATTTGT a score=2094.000000 s hg15.chr22 15013979 38 + 49476972 AAACACTTTT-----GTGATTTGAAGGTGATTTATATTTATAT s mm3.chr11 74426733 43 + 122862689 AATCATTTTTTTCAAGTGATTGTAAGGTGATTTATATTCATAT a score=7462.000000 s hg15.chr22 15018515 96 + 49476972 TTCAGAAATTTTGCTTCATGATTATGGTAGTAAACA--ATTGTATATGTGTTTATATATTTACATTTAACAGAAAGCTTTATAGTTTCATGTAGTTTT s mm3.chr13 51774843 96 - 116242670 TTTAGAAATTTGAATATAGGTTATCATTTATAAAAA--AATGCAACTATGAGTAAATGTTTGTTATTAAAAAGAAGCATTATAAATTTACGGAATTTT s rn2.chr17 88325634 98 - 93540836 TATTAAAAATTGACTGTAGCTTATCATTTATAGAGACCAGTGCAGGTATGAGAATATGTTGGTTTTTAAACAGAAGCATTGTAAGTTTACAGAATTTT a score=3168.000000 s hg15.chr22 15022347 35 + 49476972 TGATATCTTTA--TTATTGTTTAAAGACCTTTTTTCT s mm3.chr9 102279195 35 - 124467299 TGAAGTCTTTT--TTCTCTTTTTAAAACTTTATTTCA s rn2.chr8 106761030 37 - 127756414 TGAAGTCTTTTCCCCCCCTTTTAAAAATTGTATTTTA a score=1991.000000 s hg15.chr22 15022382 14 + 49476972 CTTGTGAATTTTGA s mm3.chr9 102279230 14 - 124467299 CTTATTGATTTTGA s rn2.chr8 106761174 14 - 127756414 TTTATTTAATTTGA a score=28113.000000 s hg15.chr22 15024659 294 + 49476972 TTGCTAATGTA-----CTTTGTATAATTTTATGTATTAGATTTGTAAACAATAGATTTGTATATTTACATGGGCCTAGTGAG----ATAATTTGTTATTTTTATTTCTTTCAGCCGTGTT--CTCATTTCACCCAAGACCTTTGGCTAGATCAGAACATAAAAAATTCATTTCAAAAAGTGATGATGAGAAGATATGGGAAATGCAGACATGAGAATTTACAAAT---AAAAGGTTGTAAAAGTTTGAATGCATCTAAGGTGCAGGAAGGAGGTTATAATGGACTTAACCAATGTTTGTTGATTACTC s mm3.chr3 36024258 297 + 160674399 TTGCTGATGTGCTAACCTCAGCACAGTTTTAGATGTTAGGTTTGTAA-----------GAGTGTTCTTGAGAGTCTAGTGAGTGAAATAAGTGTCTGTCTTGATTTCTTCCAGCCATGTTTTCTCATCATAGCCAAGACTTTTCACCAGAGCAGAACATAAAGTATTCATTCCAGGAACTCATCTGTGGACCTCGTGGACAGTGTGGCTTTGACGCTTTGTACTTCCCAGGAGAAAGGGACTGTGTTGAGGAGGGTGACATCCTGAGAACCTGCTATAACGGGCACAACCCATTTCTGACAGCTGGCA s rn2.chr2 118658317 278 + 246339213 TGGCTGATGTGCTAATCT-------------------AGATTTGTAA-----------GAGCATTCTTCAGAGTCTAGTGAGTGGAATAAGTTTCTGTCTTGATTTCTTTCAGCTTTGTTTCCTCATCATAACCGAGACTTTTCACCAGAGCAGAACATAAACTATTCATTCCAGGAACTCATCCATGGACCTCGTGGAGATTGTGGCTTTGACAGTTTGTACTTCCCAGAAGAAAGGGAACTTGTAGAGGACGGTGACATCCTGGGAACCTGTTATAACAGGCATGACCCATTTCTGACAGCTGACA a score=3574.000000 s hg15.chr22 15024955 23 + 49476972 AGCAAAATACTTCAAA-GTAATAC s mm3.chr6 36937630 24 + 149950539 AGAGAAATACTTGGAATGCAATGT s rn2.chr1 201896551 24 - 276301343 agagaaatacttggaatgcaatgt a score=4573.000000 s hg15.chr22 15024978 45 + 49476972 ATGTGTGAAAGTCTTTAGGAAATTTTCAAATTCAAATAGACTTAG s mm3.chr17 79478882 45 - 93529596 ATGTGGGCAATATTTCAGTGATAAGTCAAATGTCAATGAGCACCA s rn2.chr1 228475028 45 - 276301343 ATGTGGGCAATGTTTCAGTGATAAGTCAAATGTCAGTGAGCACCA a score=21347.000000 s hg15.chr22 15025025 182 + 49476972 GAAGACATACTGGAGAGAAACCTTTCAAATGTAAAGAATGTGGCCAATTCTTTCACAGGTTCTCACACCTAAGACAACATCAGATAATTCATACTGAAGAGAAACCCTACCAATGTGAAGAATGTGGCAAAGATTTTAAGCAGTCTTCAGATCTTACTATACATGAGAGAATTCATACTAAA s mm3.chr7 18071603 182 - 134401573 GAATCCACACGGGGGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCGCACCTGGTGCAGCACCAGCGCACACACACAGGCGAGAAGCCTTACAAGTGCCCCGACTGTGGCAAGTGCTTCAGCTGGAGCTCCAATCTAGTGCAGCACCAGCGCACGCACACGGGC s rn2.chr1 99257435 182 - 276301343 GAATCCACACGGGTGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCACACCTGGTACAGCACCAGCGCACACACACGGGTGAGAAGCCCTACAAGTGCCCTGACTGTGGCAAGTGCTTCAGCTGGAGCTCTAATCTAGTACAGCACCAGCGCACACACACGGGT a score=159887.000000 s hg15.chr22 15025207 1381 + 49476972 GAGAGACCCTACAAGTGTGAAGAATGTGACAAAGCCTTTAAACAATCTTCAAAACTGAATAAACATAAGAAAATTTATACTGGAGACACAACCTACAAATGTGAAGAATGTGGCAAAGCCTTTTCCTATTCCTCAACCCTTACTCAACATAACATAGTTCATACTGAAGACAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTGAAGTAGTCTTCAACTCTGACTATACATAAGATTATTCATATGGGAGAGAAATCCTACAAGTGTGATGAATGTGGCAAAGCCTTTAAAAAATCCTCAAAACTGAAAGAACATAAAAGAATTCATACTTGAGAGAAACCCTATAAATGTGAAGAATGTGGCAAAGCTTTTTACTGTTTCTCAGGCCTTACTCAACATAACATAGTTCATACTGGAGACAACCCCTACAAATGTAAAGATTGTGGCAAAATTTTTAAGTGGTCTTCAGACCTTACTATACATCAGATAATTCATAGTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAAACAATCCTCAAAACTGAATGAACATATGAGAGCTCATACTGGAGAGAAATCCTACAAATGCAAAGAATGTGGCAAAGCTTTTAAACAACCTTCAGGCCTTACTCTACATAAGAGAATTCATACTGGAGAGAATCCTTACAAATTCGAAGAATGTGGTAAAGCCTTT-TATTGATTTTTAAGCT-TTAC----TAAACATACGATAATTCATAGGGGAGAGAAACCCTACAAATGTCAAGAATGTGGCAA-AGCTTTTAAGTGGTCTTCAAACCTTACTATACACAAGATAATTCATACAAGAGAATTCATACGGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTGTAAGCAGTCTTTGGGGCTTACTATA------CAAAAGAGAATTCATACTGAAGAGAAACCCTACAAATGTGAAGAATGTGGTAAAGCCTTTTACTGTTCCTCAAACCTTATTCAAAATGACATAGTTCATACTGAAGAGAAACACTACAAATGTCAAGAATGTGGCAAAGCTTTTAAGAAGTCTTTAGACCTTAATGTACATAAGATAATTCATAGTGGAGAGAAACCCTACAGATATCAAGAATATGGCAAAGTCTTTAAACTATCCTCAAAACTGAATGAACATAAGATAACTCATAGTGGAGAGGTATCCTACGAATGTGAAGAA--TGTGGCAAAGGCTT--------TTACTGCTCCTCAAGCCTTACTAAGCATACGATAGTTCATACTGAAAAGAAACTGTACAAATGTGAAGAATGTGGCAAAGCTTTTAAGTGGTCCTCTGAGCTTCCTATA-CATCGGAGAATTCATACTGAAGAGAAACCCTATAAATGTGAAGA s mm3.chr7 18071533 1364 - 134401573 GAGAAGCCATACATCTGCAACGAGTGTGGCAAGAGCTTTAGCCAGTGGTCCAAACTGCTGCGGCACCAGCGAATCCACACGGGGGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCGCACCTGGTGCAGCACCAGCGCACACACACAGGCGAGAAGCCTTACAAGTGCCCCGACTGTGGCAAGTGCTTCAGCTGGAGCTCCAATCTAGTGCAGCACCAGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCACGGAGTGCGAGAAAGCCTTCACACAAAGCACCAACCTCATCAAGCACCAGCGCTCCCACACCGGGGAGAAGCCCTACAAGTGTGGCGAGTGCCGACGTGCTTTCTACCGCAGCTCGGACCTCATCCAGCACCAGGCCACGCACACAGGTGAGAAGCCCTACAAGTGCCCGGAGTGCGGCAAGCGCTTTGGCCAGAATCATAACCTGCTCAAGCACCAGAAGATCCATGCAGGCGAGAAGCCCTATCGCTGCACCGAGTGCGGCAAGAGTTTCATCCAGAGCTCGGAGCTGACGCAGCACCAGCGCACACACACCGGGGAGAAGCCCTACGAGTGCCTGGAGTGTGGCAAGAGTTTCGGCCACAGCTCCACGCTCATCAAGCACCAGAGGACACATTTGCGCGAGGATCCCTTCAAGTGCCCCGTCTGTGGCAAGACCTTCACACTGAGTGCCACCCTGCTGCGCCATCAGCGCACG------CACACGGGCGAGAGGCCCTACAAGTGCCCCGAGTGCGGGAAGAGCTTCAGTGTGAGC-TCTAACCTCATCAACC--------------ACCAGCGTATCCACCGTGGGGAGAGGCCGTACATCTGCGCCGACTGCGGCAAAAGCTTTA------TCATGAGCTCCACTCTGATCCGCCACCAGCGCATCCACACCGGCGAGAAGCCCTATAAGTGCTCTGACTGTGGCAAGAGTTTCATTCGCAGCTCGCACCTCATCCAGCATCGCCGCACGCACACGGGCGAGAAGCCCTACAAGTGCCCGGAGTGTGGCAAGAGTTTCAGCCAGAGCTCCAACCTCATCACGCACGTCCGCACACACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTTCCTGGAGGCGCAAGAGCTGGAGCAGCACCGCGTGATCCACG--AGAGAGGCAAGACACCTGCCCGGAGAGCTCAGGGTGACAGCTTGCTAGGGTTTGGGGATCCT---GCCCTGATGACTCCGCCAC--------CAGGAGCCAAACCTCACAAGTGTCTGGTCTGTGGAAAGGGCTTCAA-TGATGAAGGCATCTTCATGCAGCACCAGAGGATTCATATCGGAGAAAACCCCTACAAAAATGCAGA s rn2.chr1 99257365 1364 - 276301343 GAGAAGCCATACATCTGCAACGAGTGTGGCAAGAGCTTTAGCCAGTGGTCCAAACTGCTGCGGCACCAGCGAATCCACACGGGTGAGCGGCCCAACACGTGCTCAGAGTGCGGCAAGAGCTTCACGCAGAGCTCACACCTGGTACAGCACCAGCGCACACACACGGGTGAGAAGCCCTACAAGTGCCCTGACTGTGGCAAGTGCTTCAGCTGGAGCTCTAATCTAGTACAGCACCAGCGCACACACACGGGTGAGAAGCCCTACAAGTGCACTGAGTGCGAGAAAGCCTTCACACAAAGCACCAACCTCATCAAGCACCAGCGGTCCCACACTGGCGAGAAGCCCTACAAGTGTGGCGAGTGCCGCCGTGCTTTCTACCGCAGCTCGGACCTCATCCAGCACCAGGCCACGCACACGGGTGAAAAGCCCTACAAATGCCCGGAGTGTGGAAAGCGCTTTGGCCAGAATCACAACCTGCTCAAACACCAGAAGATCCACGCGGGAGAGAAGCCCTATCGCTGCACTGAGTGTGGCAAGAGCTTCATCCAGAGCTCAGAGCTGACGCAGCACCAGCGTACGCACACTGGGGAGAAGCCCTATGAGTGTCTGGAGTGTGGCAAGAGTTTTGGCCACAGCTCTACGCTCATCAAGCACCAGCGGACACACTTACGCGAGGACCCCTTCAAGTGCCCGGTCTGTGGCAAGACCTTCACACTGAGTGCCACACTGCTGCGTCATCAGCGCACG------CACACAGGTGAGAGGCCCTATAAGTGCCCCGAGTGCGGCAAGAGCTTCAGTGTCAGC-TCTAACCTCATCAACC--------------ACCAGCGCATCCACCGTGGGGAGAGGCCATACATCTGTGCTGACTGCGGCAAAAGCTTCA------TCATGAGCTCCACCCTGATCCGCCACCAACGTATCCACACCGGTGAGAAGCCCTATAAGTGCTCTGACTGTGGCAAGAGCTTCATCCGCAGCTCTCACCTCATCCAGCACCGCCGCACGCACACGGGTGAGAAGCCCTACAAGTGTCCAGAGTGCGGCAAGAGCTTCAGCCAGAGCTCCAACCTCATCACGCACGTCCGCACACACATGGACGAGAACCTCTTCGTGTGCTCCGACTGCGGCAAGGCCTTCCTGGAGGCTCAAGAGCTGGAGCAGCACCGCGTGATTCATG--AGAGAGGCAAGACACCTGCCCGGAGAGCTCAGGGTGACGGCTTGCTAGGGCTTGGAGATCCT---GCCCTGATGACTCCACCAC--------CGGGAGCCAAACCCCACAAGTGTCTGGTCTGTGGAAAGGGCTTCAA-TGATGAAGGCATCTTCATGCAGCACCAGAGGATTCATGTTGGAGAAAACCCCTACAAAAATGCAGA a score=5166.000000 s hg15.chr22 15026588 337 + 49476972 ATAT-GTCAGAGTCTTTAAACACT-------------------CCTCAAAACTGAATGA------ACATAACAGAAATCATACTGGAGAGAAACCCTACAAATATGAAGCATGTGGCAAAGCTTTTTAAGCAGTCTTCAGGCCTTACTATACATAAGAGAATTCATACTGGAGAGGAATCCAG-AAATGTGAAGAATGTTGCAAAGCCTTTTACTGGTCCTTAAGCTTTACTAAA----CATAAGAGAGTTCATACTGGAGAGATACCCTACAAATGTCAAGAATGTGGCAAAACTTTTTCTT-GTTCCTCAAGTTTACTCGACATAAGACAGTTCATACTGAAGAGAAATCCCACAAATGTAAAGAAT s mm3.chr17 21706610 354 + 93529596 ATGTAGTAAGTTTTTCTATACACTGTAATGATTGTGGCAAATCCCTTTCCACTGCCTTAGGTGTTAAAACACTGAGGTTTCACAGTAGAGAAACATCACAAATGTATTAAATGTGATGA--CCTTTTACCCAGAAAGTTAAACTTAAAACACATCACAGAATGCATACAGGAAAGAAATTTTGTAAATGTGAAAAATGT---------TTTGCCTGG----TGGACTTGTCTAAGAATCTATCAGAAACTTCATCTAGGAGAGAAAAACTACAAATATAGTAAATGTGTCAAATCTGTTTTTTAGAAACACTATTATAGAAGACATCAGGTAGTTTATACACGAGAGAAGCCTTAAAAATGTGAGAAAT a score=502.000000 s hg15.chr22 15026925 99 + 49476972 GTGGGAAAGCCTTTAACCAGTCCTTATGCCTTATTAAACTTATGAGAATTCATACTGGAAAAAAATCATTCAAATCATAAGACTGTGGCAAAATCTTTT s mm3.chr17 21706880 90 + 93529596 GTGTCAAATCTGTTTTTTAGAAACACTATTATAGAAGACATCAGGTAGTTTATACACGAGAG---------AAGCCTTAAAAATGTGAGAAATTCTTTT a score=11400.000000 s hg15.chr22 15027024 113 + 49476972 AAGTATTGCTCAAATAT-ATCCATC----CGTAATTCATACTAAAGATTATGCCTATGAACCTAAAAAAGTTTGGCAGAGCTTATGAATACACCTCAAACTTTCCTAAGCATTGGAGA s mm3.chr7 19443839 117 + 134401573 AAGCGTGAATCCAATCTCATTCAACATGGCGCTGTTCATGCTGGTGTGAAATCATATGAATGC-AGTGAGTGTGGGAAAGGTTTTATTCACCGCTCAAGCCTGTTCCACCATCGGAAa s rn2.chr1 201897011 117 - 276301343 AAGCGTGAATCCAACCTCATTCAACATGGGGCTGttcatgccggtgtgaaatcatatgagtgc-agtgagtgtgggaaagcttttattcaccgctcaagcctgttccaccatcggaaa a score=141.000000 s hg15.chr22 15027137 334 + 49476972 AATATCAGTGAGAAACCTCAGAAAACTGAACAATGTGGCAAGGCTTTTAAATGGTTGTCACATCTTACTGTAGGCAAAATAATTGATAGTGGAGAAAATCTCTACAAACAAAG--AATGTGTCAAAACTTCTGACATGCTCATACCTCATGACACATAAAAGCATTTATACTTGAAAAATTATACAGAGTGTGGAAAAGCCATTTCTATCTGCTCACATCATAGTCAACATCAGTAAGTTCATACTTAATAAAATTATTATAAATGT----AATTACTTTTGAAAGACCTTGGAAAATTTAAACCCTTAAAGAAAAAAGAGTATTCTGGAGACAAATATT s mm3.chr17 21706780 233 + 93529596 A---------AGAAATTTTGTAAATGTGAAAAATG---------TTTTGCCTGGTGGACTTGTCTAAGAATCTATCAGAAACTTCATCTAGGAGAGAAAAACTACAAATATAGTAAATGTGTCAAATCT----------------------------------GTTT----------------------TTTAGAAACACTATT----------------ATAGAAGACATCAGGTAGTTTATACACGAGAGAAGCCTTAAAAATGTGAGAAATTCTTTTCAAATGA-----AAAAGGCTCAAGTCTTAGAAA------------CTGTCAGAAAATGCt a score=4440.000000 s hg15.chr22 15027471 30 + 49476972 ACAAATATAAAGAGGGTTGTAATACCTTTA s mm3.chr5 22670698 30 - 149719773 ACAAATGCCCAGAGTGCGGCAAGGCCTTCA s rn2.chr12 27737356 30 + 46874691 acaaatgtccggaatgcggcaaggccttca a score=19.000000 s hg15.chr22 15027501 71 + 49476972 CTTGCCCTATATAATGTACAGATTTTATGGTAGAAGAAAACTCTAATGGAATTACTCAAACTTGTTCAGCA s mm3.chr6 36938990 32 + 149950539 ATT-------------TACAGAATT-------------AGCTC------AGCTCTTAAAGCTCA------- s rn2.chr1 201897914 32 - 276301343 ATT-------------TACAGAATT-------------AGCTC------AGCTCTTAAAGCTCA------- a score=902.000000 s hg15.chr22 15027572 17 + 49476972 TCAGAGAATTTATATTG s mm3.chr17 21707333 17 + 93529596 TCAGAAATTTTATACAG a score=13699.000000 s hg15.chr22 15027589 81 + 49476972 AAGGAAACCATACAAATGTAATAAATGTGGAAAAACATTTTTTCAGAAAATACAGCTTACAAAACACCACACAGTTTATAA s mm3.chr8 105892743 81 + 128923138 AAAGAAGCCTTATAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATAAACACGAGAAGATTCATAA s rn2.chr19 36008244 81 + 58130210 AAAGAAGCCTTACAAGTGTGATAAATGTAGGAAGTCATTTATTCATAGATCATCACTCAATAAACATGAGAAAATTCATAA a score=4752.000000 s hg15.chr22 15027670 135 + 49476972 ----TAAAAGATAT----TTTTGCAGAGGGAACACA------TGTGTAAAAATATTTAGTCAAAATTAAGTCTTTGTAAACTTTAGAAAATTCACAGTAGGTAGAACTAAGGCACTGGCACTTAAGACGTTACACTAAATCAGAATGTT s mm3.chr6 36939124 112 + 149950539 TCACCAGGAGTCATGTGCATGTGAAAGAGG---ACAAGCCACTGTATGAAAA------------------TCTTCCTGAACATCAGAAAACTCACATTGGGAAGACC----------------ATGACGTCACATAAAATGAGAACTTT s rn2.chr1 201898046 113 - 276301343 TCGCCAGGAGTCATGTGATTGTAAAGGAGGAGAACAAGCCATTGTATGAAAA------------------TGTTACTGAAGGTCAGAGAGCTCATATTGGGAAGAC------------------TGGCTGAAAAGAATTTGGGAACTTT a score=6861.000000 s hg15.chr22 15027805 115 + 49476972 CTGTATAGAAAGTAATCCAAAGCTAAAACTGTTGGATAATTTATTTGTATATAAGTTTAAGAGGAGTGGAAGATTAT----TTTTTGGAG------------------TTA------TAATTACATTCAAGGTATACGTTTTT s mm3.chr7 103138876 112 - 134401573 -------CATAACCATCTAAAGTCAAAACTGTTGCATAA--CATTTGTATA----TTTCAGTGGAACAGGATATTTT----TATATGATG------------AAAAGATTACTGT--TGATACTATTTGAGCTTTAAGTTTTT s rn2.chr1 84667639 127 + 276301343 -------AATAACCATCTAAAACCCAGACTGTTGCATA-----TTTGTACA----TTTCAGTGGAACAGGATATTTTAATTTATATGATATACCTTTGATGTAAAAGATTATTGTATCGATTAAATTTGAGCTTTAAATGTAT a score=2145.000000 s hg15.chr22 15028287 83 + 49476972 TAAAATGTAGGGAATTTTAAAATTCTTTTATAAGACTGTGATAACTTAGCTTTTAAATTAAATGAAATAGTTTTAAACTTTTT s mm3.chr7_random 158340 83 - 620591 TGAAATTTAATGAATACAAACTGTTCTTCATCACTGTTTGATATTCTTTCCTTTAAATTAAACAAAATATTTTTCACTTTGTT a score=6566.000000 s hg15.chr22 15030078 43 + 49476972 TTTAGTTTTGTTTGTGTGTCTACTTATGTTTATCCCAACTGTG s mm3.chr7 21643452 43 + 134401573 TTTAGAGATGTATGTCTATCCACTTATGTCTTTGCTAACTGTG s rn2.chr1 76466836 43 + 276301343 CTTAGAGATGTGCGTCTGTCCACTTATGTCTTTGCTAGCTGAA a score=5794.000000 s hg15.chr22 15030660 70 + 49476972 ATGGAAAATATAAAATTAGTTAGAAGATATGTCTTAGAAATT---------------AAACTTTTAGAAGAGTTAATGTTAAGTG s mm3.chrUn_random 15513905 80 - 117911829 ATAGAGAATATATAATTTATAAACAAAACTGTTTTAAACACCTTTTT-GCAGTGAGAGAACTATTTAAATA--TACTGT--AGTA s rn2.chr1 64163521 81 + 276301343 ATAGAGATTATCTAATTTATAAACAAAACTGTTTTAAACTCTTTTTTTGCAGAGAGAGAACTATTTAAATA--CATTGT--AGTG a score=50247.000000 s hg15.chr22 15030730 521 + 49476972 GAGAATGTTAAATTTAATTTTTTATTACATACTTACAGCTCAACTTAAGTTTTCATTCAGAATCTTTTATTTTGG-TGTGAATGTTAAATATTCGAAA--------------ATAATAGAATGACACCTGTGGATTTCACTTGTGAAATAATCTT----TTTCATATTAATGTTAAAATCTTGAGGAATTTCTCACACTTGT---ATAATGTACTTTTTTAT-----TGGGTGCAGTTTACAATTTAGAGGTTTCAGTCTTTGTCACCTAACT--AGTCAACTCCTTGGTCATTTTATCTCGAAAAATTTTAAAGATCATGGCATCTTTTGAGTTAAAAAATGTCTTCAGTGGTCTGGGATGCAAACTTATTTACTCTCTTCAGAG---TGGTTTAATCATGTGAAACACAGCAAGAGCTGCCCTTTTTGTGTCTTCCCTATCATTACCACCAGCACCAGAAACTCCAGTTGTCCCAAGCTCAAAATAAAAGCCCTAAGGTACATTGGCTTCTCCCATGCTCTGTGCTGGTTCCCGAACATGGTGGTAAATAT s mm3.chr17 19442684 543 + 93529596 GGGAATGTTCAGTGAAAGGTTTTATTGAA-----GCATGtttgttt--gttttgttttgttttgttttgttttgt-tttgttttTTAAATGACTTAAACAGAAAAGTGATGGATGACAAAATGGGGTCCAGGAACTTGGCAATAGGAATAGTGCTCTCACTTCAGGGTGTATTTGGAATTCTGGGAAACTTCTCTCTTCTTTTCCACTATCTACTCCTTTACTACAATGAAGGCAAGTTAAAGACCATAGACTTGATTCTTACACATGTGTTTACAGCCAACTCTTTGATCATTTTCTCCAAAGGAATGCTACAGATAACAGGAGCTTTTGGATGGAATCAGTTCTTCAATGATATTGGATGCAATCTTATTTTATATATTCTCAGACTTGGCAGGAGTATGTCTA--TCTACACCACCTGTCTTGTGAGTGTCTTCCAGGCTATCACCATCAGCCCCTGGAAATCCTATTGGAAGGATCTCATAGTCAAAATTCGAAGGCTCATGGGTTTCTTCATTTCACTCTGCTGGATCCTACACATGATGGTGAATAT s rn2.chr1 51334683 531 + 276301343 AGAAATGTTTAGTGAAAGATTTAACTGAA-----ACATTTTTTTTT--------------TTGGTTTTGTTGTTTGTTTGCTTCTTTAATGATTTTAACAGAAATGTGAGGCATAA-AAAATGGAGTCCAGGAACTTGGCAATAGGAGTAGTGCTCTCACTTCAAAGTGCACTTGGAATTGTGGGAAACTTTTATCTTCTTTTCCACTATATACTCCTTTACTACAATGAAGGCACATTAAAGACTGTAGACTTAATTCTTACACATGTGTTCACAACTAACTCTTTGATCATTTTCTCCAAAGGAATGTTATAGATAACTAGAGCTTTTGAATGGAATAAGTTCTTTAGTGATATTGGATGCAAACTTATTTTATATATTCTTAGACTTGGCACAAGTATGTCCA--CCAATACCACCTGTCTCATGAGTGTCTTCCAAGCTATCACCATCAGTCCCTGGAATTCCTGTTGGAAGAATCACATAGTCAAAATTCAACAGCTCATGGGCTTCTTCATTTCACTCTGCTGGGTTGTACACATGATGATGAATAT a score=2779.000000 s hg15.chr22 15031251 48 + 49476972 TAGAGTTCATATGGTCATGACTGACTAGGTGACAAAACAGCACAGAAA s mm3.chr17 18934514 39 + 93529596 GATTTTTCCTGTTTATATGTATAACAAAG---------AGAACAGAAA s rn2.chr1 50597728 39 + 276301343 GATTTTTCCTGTTTATTTGGATAGCAAGG---------AGAACAGAAA a score=5416.000000 s hg15.chr22 15031299 45 + 49476972 CTGTATCTTTCATACTATTCAGACAGGTTTACGACAAAAACACAG s mm3.chr17 19356187 41 + 93529596 TTTCAAACTCTATACTATT---GTAGG-ATATGACAAAAACACAG s rn2.chr1 51208286 41 + 276301343 TTTCAAGCTCTATACTATT---GTAGG-ATATGACAAAATCACAG a score=4530.000000 s hg15.chr22 15033820 69 + 49476972 tttattatgaggagatattgaattt---------tgttacactttcattatacatctatttgaatgTTACATTTGTGa s mm3.chr6 83375459 67 - 149950539 TCTTTTATAAGAGTACATAGAATGCCTTACTACATGTGACATTGACTTTATATATC-----------AAAACCTGTAA s rn2.chr4 90735316 65 - 183307734 TCTTTTAT--GAGTACATAGAATGCCTTACTACATGCGATATTGGCTTTATATATG-----------AAAATCTACAA a score=23721.000000 s hg15.chr22 15036629 202 + 49476972 AATAAAGTACTTTGTGATATAATGCCGTG--TTAGATTTCTCCAGTTTTG-GTTAATGGTTGGAATTAAGGGTGGAAGACATAGAATTTTGTCCCCTTTAGACATAGGGGTGAATGTTTCTATAACAGGTCTCCTGACATCCTATACGCTATTTTCTCTG-AAAGCCCTTGGCC------------------TTAGTCTTGAGTGTGCAGCTAAAATAAATGAC s mm3.chr6 83375526 220 - 149950539 ACCA---TGCATTGTGGTATAACCCAGAGGGTTGGAGTTCTTAAATTCTAAGCTAATGGTTGGATGTAGGAATTAAAGACTGAGTGTTCTATTCCCTTT-GGCATGGGAGAGTGCATTTGTAGTTCAGGCCCCATCGAAACCTCTCAGTTTTCATACCTGCAAAGCTTTTGGTCTGTAGCCCAACAAGTATTTTATTTTCACATTTTCAGCTAAAATAAATGGC s rn2.chr4 90735381 220 - 183307734 AATA---TGCTTTCTGGTATAATCCAGAGGAATGGAGTTCTTATGTTCTGAGCTAATGGTTGGATCTAGGGATCGAAGACTGAGCGTTCTATTCCCTTT-GGCATGGGGCTGTGCACTTGTACTTCAGGCCTCATTGAAACCTTTGAGTTTTCATACCTGCAAGGCTTTTGGTCTGTAGCCCAGCAAGTATTTTATTTTCACATTTTCAGTGAAAAGAAATGAC a score=74373.000000 s hg15.chr22 15037038 642 + 49476972 TCTACATCATTATTTTTCATCTATTTACAGTATGCTAGATGATAGTGTTAATTTATTAGTCTACTCCTTTGGGAAACAA-AGATGGTCAGTGGTTTAAGTTTTTTT-----AGAACCGTTTTTGAAAATATGAAGCTATGGTAATCATACCTAAGTGACATAATTAGGAAATAAAA-----TTTCTAGAAAAAGCATGAAAGCGTTATGGTTAAAGTTCAAGAACAATGAAAC---GGGAGTATTGGTTAT-TTAAGACAACCGTCTTGCA-AAGGCAATCATTTCATCACAACCATTTTGGTGAAAAAGAATAATGTGTCAGAAGGAATTTTTAGAATAATTTT-CTGATTATATGGCAGTGTTAAATTTTTATTTGTATTATTTGTCATATATAAGTCTGTAAATAAAAGAGAACATGGCCTGACTTTCAGATGCATCTTTTCACACATATATTCTCCCTAGAAGGGCACTGGTGTGCTTTTCAAAAGGGGTAGCATTGCTGGCTTTCGTTGTGCTGCTATGTTTGTGTGCTAAATGAAGGCAGAAAGTGAAGCAGAGTCAACCAGGACGTTTCTAGTTTCTACATCCACATCATCTGAAATCTAGTGTTATGTCAACTAGAAATAAT-CCTGGGGCTAAGTATTTTAAAACTGAAAA s mm3.chr6 83375746 626 - 149950539 TCTACATTTTAATTTCCCATCTATTAGCTGCACTTTAGGCTACAGAGTTAATCTGTTACTCTACACTTTGGGGACATGATAAATAGTT--CAGATGGATTTCCTTTCAGAAGAAATCATTTCTGCAAATATGAGACTGTGGAAATCTTGCCCAAGGGAGAGAATTAGGAAAAGGAAATATTTTTCTAGCAAAAATATCAAAGTCTTATGACTGTGGCCCAACAATGATGAGACAGAGAAAGTATGGGTTGT-TTAAGACCACCCTGCTGAGTGAGGCTCCTACTCTATCAGAGCCATTTCAGC-AGAAAGAATGATGGGTGGAAGAATGTTTTCAGAACACTTTTGCTGCATCTAAGTCTGCGTTAAATCTTCATTTTTGCCATTTGTCTTGCAGAAGTCTGTACTTTAAAAGAAAAATGGCATAACTCTCAAACATGTCTTCTACTTAATTTATTCTCTCTGCAGGG-CTCCTGTGGGCTC----------------TTGCCTCCTTCTGC--TGCTCCT-AGCATG-------GAACTGGACACAAGATAAAACTGA---CACCAGTACAGTTCTCATTGTTATGTTCATCATGTCTGAAATCCGGTGCAGTACCAATGAAAAGTAATATCTGGGAATAAAGGTTTCAGAACTGAGAG s rn2.chr4 90735601 603 - 183307734 TCTACATTTTAATTTCCCATCTATTAACTGCACTTTAGGCTACAGGGTTAATCTGTTACTCTACACTTTGGGGACATGACAAATAGTT--CAGTTGGATTTCCTTTCAGAAAAAGTCATTTCTGCAAATATGAGACTGTGAAAATCTTGCCCAAGGGAGAGAATTAGGAAAAGGAAATATTTTTCTAGCCAAAGTATCAAAGTCTTATGACTGTGGCCCAAGAATGATGAGACAGAGAGAGTAGAGGTTGCATTAAGACCACCCTGCTGAATGAGGCTCTTACTCTAT-----CCATTTCAGC-AGAAAGAATGATGGGTAGAAAAATGTTTTCAGAACACTTTTGCTGCATCTAGGGCTGTGTTAAATCTTCATTTTTGCCATTTGTCTTGCAAAAGTCTGTACTTTAGAAGAAAAATGGCATGACTCTCAAATATGGCTTCCACTTAATTTATTTTCCTCACAGGG-------------------------------------CTTCTGT--TGCTCCTAAGCATG-------GAACAGGAAACAAGACGTGACTGA---CACCAGCACAGTCCTTATTGTCATGGTCACTACGTCTGAAATCTGGCACAGCACCAAGGAAAAGTGGTATCTGGGGAGAAGGATTTTAGAACTGGGAG a score=368.000000 s hg15.chr22 15037680 32 + 49476972 A---AAATGCATTGataaatatattttttgtttat s mm3.chr6 83376372 35 - 149950539 ATACACATGTATATAGACAAATGCTTCCTGATTAT a score=60340.000000 s hg15.chr22 15043936 423 + 49476972 TAAAATGTCTTGCAGTTGATTTTCTAGGTAACAACGGAATCTGTTTTCTCAAACAGTAGCATGAGAATTCTTGATATACCACCTTCAGAGGTACTGAAAACAACCATATACTTTTGCTGAAATTTGGATTT-TTTCATAACCTCTTCAGAGGCTGAGTCATGGCAACATATGACAGCTTAATTTATTCTTCTTCTC---TAAA----TGTTGTGGAGCCACATCCACCTGTGTAAATAACACTAACTGGGTAAAAGCTTTTTTAT-ACTAAGCCAGAAATCATTATACCTGGTGGTTTTATTTTAAATGTATGAACAGTATTCTATAACATTCAAATAAGTAATAGAAATTTAATTCTATATATATGGAAAGAAAAGTTATACAGGCACACTGAGAATAAATTGGAATCTGGAACTGAATGCTGATTAGCAT s mm3.chr6 83252523 423 - 149950539 TACAATGGCATCAGGTTGATTTTATAGGTAACAGGAGAATCTCCTTTTCCAAACAGTAGCACAGATATTCTTTGTACACCTCTTTC-----TACTGAAAGCACTTAGTTAAATGTGCTGAAATGCGGTCTTTACTCACAAACTCACTA-AGGCTGAGTCAAGGTAG---ACATCAGTCCAAGTCACTGTTTCTTTCCTGTAAATCACTGTTGTCAAAGCCTACCCATCTGTGTATGTAACGCTAATTTGGAAATAGCTTCTTTTTTACTAAGTCAGAACTCATTTTACCCAGTGGTTTTATTTTGAGTGTATGAAGTGTATTAAATAACATTCAAGTATGCGATAGAAATTTAATTCAAAGAAGATGGAAAGAAAAGCCATGTGGTTGTATTGAGAACACAGTGGAATCTGGCACCTGACTATGCTCAACAT s rn2.chr4 90570546 408 - 183307734 -GAAATGCCATCAGGTTGATTTCATAGGTAACAGGAGAATCTCCCTTTCCAAACAGTAGCATAGATATTCTTT------------C-----TGCTGAAAGCACCTGGTTAAATGTGCTGAAAAGTGGACTT-ACTCACAAATTCACTA-AGGCTGAGTCAAGGTAG---AAATCAGTCCAAGTCACTCTTTCTTTCGTGTAAATCGCTGTTGTCAAAACATATCCATCTGTGTACATAACACTAATTTGGAAATAACTTCTTTTT-ACCAAGTCAGAACTCATTTTACCTACTGGTTTCATTTTGAGTGTATGTGCTGTATTAAATAACATTCAAGTGTGCAATAGAAATGTAATTCAAAGAAGATGGAAAGAGAAGCCTTGTGGTCACGTTGGGAACACAGTGGAGTCTGGCACCTGACTGCACTCAACAT a score=9782.000000 s hg15.chr22 15046027 89 + 49476972 TGTTTCTCTTGATTTGGGAGGGCAGTGTATTAAGCAACTTAAATCCTAGGCACAATTCACAATGCCAGCTCTCAATAAATTTGTTACTG s mm3.chr5 3374794 89 + 149719773 TGTTTCTTTTGGGTTAGGAGAGCAGTCTGCTAAAAGATTGAAAACCTATGTCCCCTCCAAAATCTCAACTCTCTATTCATGCATTTCTG s rn2.chr4 19190884 87 + 183307734 TGTTTCTTTTGGGTTAAAAGAGCAGTATATTGAAAGTTTGAAAAC--ATGTCTCTTCAAAAACGTGAACTCTGTATACATGCACTTCTG a score=22896.000000 s hg15.chr22 15046919 325 + 49476972 TATTTGTACCCTGTGCTA-AAACAGATTCATTTGCGGTATTTAAATGACAAAACTGGAATTATTTCAACCCGGAAATCATTG-TTTCAAATTTCCATGGTTAAAGGTTTGCTCAAGCAAATCTTAAAACACAGGTATGTATTTCAGAAGATCAACCAAATTCGAG----TTTGCATCCCATTTTG---GGTACATTGTAAATAGAAATTTCA-------AAATCTTCCTCAAAAATATCTGCATTTGTTTTCCAGATTCTTGCAACCCAAAACAAAACTTCACAGAAACTCTGCACAAGAGTTGGCAGACAGCTAAACCT-------------------------------------TCTCCAAATTGAGTTATGGAC s mm3.chr5 26906329 313 - 149719773 TACTTCCACCCTGTGCCGCGAGTAGATATGCCTAGAGCATCTAAACAACAAAATCGGAA-TGTTTCACATCACAAGTTGTGGATTTCCAATGTCTGTGG--AGAGATTTCCCCAG-------------------TACCGGTTCCAGAAGGG-AATGAAATTCAAGAAAATGAGAGTCCCATACTGCCTGTCACCTCGAGAACAGAGGTCTCTCTCGGCCACATCCTC-----AAAGACCCAAATCTGTGTGACAGATACCTGTAACCAAAGACAGAACTTCACAGACATACGGCACCAGAGCTGCCAT-CAGCTGGGTCCC------------------------------------CCTCCAAGCTCAAGTTGGGAC s rn2.chr12 31221979 321 + 46874691 TACTTACAGCCTGTGTTGCAAGCAGATTTGTCTAGAGTATCTAAAGGATAGAACTGGAA-TGTTTCACACCAGAAGTTGTGGGTCTCCAGTGTCTGTGA--AGAGATTTCCCCAG-------------------------------AAGGA-AATGAAATTCAAGAAAGTGAGAGTCCTATACAG----TCGCCTCAAGAACAGAGGTCTTACTTAGCCACATTCTC-----AGAGAGCCAAATCTGTGTGGCAGATA------ACCAATGACAGAACTTCACAGACACAC------AGGGCTGGCAT-CAGCTGGGTCCCTCCACCAAGGTCTGCCAGGAAAGCCGACAGGTGCCTCCACCAAGCTGAAGTAGAGAC a score=9261.000000 s hg15.chr22 15055134 543 + 49476972 ATATTAAAAGTAATATTGATG-------AAATAAAGTTAGAAATATAAAATTTTTACCAGCGATTGATTGAGCTGATTCAAATTACTTCTTACCATCTTCAATTCCATATCTTGTATATTCGGAGAGCGAGTTCAAGTTGCTTC---ACTTCTAACTTTTTCTTTTGCAGCTCTTCGAATTTTCCTAATTCTTTCCTATTTTTTCTTTTAATAT--ATTGGCATT-----TCTTCTCTTATTCTTGTTTTAAAGTCAATCTGCCATTAAATATACTTATCTTAAAATTCATTTTGTTAGA-AAATAGAATTCACTTTGAGATCTACTTCTTCCTATATCGG-----------TTTAT------TATTCCAATGAAATTCTTATATTCTTGAATACGTTTTTCCTTTCTAGTTCTGAGGTATTTTATTACTGAACTCTCTTCCAAATGACACACATGCT-TGAACAATAGTGAGAA--AAGAATATCTTCTAGTTAGAAAGATTCTGTTACTAGTAACTTCAACAACTGTTATGGAAAAGAATACTGGAAGCTATCCAGTAAAGTTATAAGTTGaaaattat s mm3.chr6 119205671 523 + 149950539 ATAATTAAAGTAACATTAAGATAACAACAAATGAAGGTAAGAGAG--ACACTTTTACCAGGGATTGGCATACCTGGTTGAGATGGCTTTTCACCGTCTTCAGCTCCATCTCCAGGGT--TCTGAGAGAGGCTTCAAGCTGCTGCCTGGCTTCCACCTCACTCTGACACTGCTCGCCTT-TCCTTCTAAGCTGCTCCGAGGTTTTCTCAGAAAGCTGGTCTGCACTCCTCCTCTTCTCTTCCTCTTGTTTCAGTGCAAATCTGAAATTAAATGTGCTCACCTTAAAATTAACTTGTTTATAGAAACAGAGATCACGTTGTGACCTGGACCTCAACACGTTGTGACCTGTGACCTTTATAAGGACTACCCTAATAAAACTTCTCTGCTGTTAA-------------------------------------------TCTCTTCTAAA--GCCCATATGCTCTTGATGATAATAAGGATGAATAAAAGCTT-TAATTAGCAAGTTTCTAG-------AAGTCTGGTAAGTGTTATTAAAAAGGAATTCTGAACTCATTCAGTAAAGTTACAAGTTGAGAATTAT a score=1893.000000 s hg15.chr22 15055677 90 + 49476972 tattttaaaaatataa--------------CAGTCAAAATTACTCCTCAATGAGGACAGATCATTTAGAGTTAACTAATTAAAATGACGTTACTTTTTA----TAAAC s mm3.chr6 119206397 107 + 149950539 TTTTTTAAAAAAGGAAATGATATCTTTACACAATTGTATTTACTTCTCAATCAAAACAGGCAATTTAAACTTAATTGTTTAAAA-GGTATTAGTTATAAGGATTAGAC a score=24020.000000 s hg15.chr22 15056592 188 + 49476972 TAAGTCAGCTAGT---ACAAAAAGTATCCTATATACTAGTATAT-----------CATACCTCAGACTGCAGAGCTCTTGTTCTCTTTTAACTTTTTGATTCTCTA----TGATTTTATTTCTTTTGGTTCTGATAGTTCATTTTGTAGTACACGAAGCTTATTTTTCATTTGTTTCATTTTTGCTGTAAGTTGTTCACAGGGAtt s mm3.chr6 119207605 205 + 149950539 TGAGTGAGTGAGTGTAACAGAACATTAAACAGTAATAAATAAAG-ACAGAGACAGCACACCTCAGCCTGCAGAGCTCCTGTTCCCATCCGACCTTTTCATGTTCCAACCGTGACTTCACTTCTTCTGTCTCTGACATTTCCTTCTGCAATCCCTTATATTTGTTTTCCATTCTTTTCAGTTTTCCTGTAAGTAGTTCACAGTGGCT s rn2.chr4 151590418 203 + 183307734 ---GTAAGTGAGTGTCGGAGAACGTGAAACATGAATTAGTAAAATAAGGAGACAGCACACCTCAGGCTGCAGAGCTCCTGTTCCCACGCGAGCTTCTCATGCTCCAGCCGTGACCTCACTTCTTCCGTCTCTGACACCTCCTTCTGTAGTCCCTTACATTTGCTTTCCACTCTTTTCAGTTTCCCTGTGAGTAGCTCGCAGTGGCT a score=55113.000000 s hg15.chr22 15057115 1035 + 49476972 TTTTTTAAGTTCCCTTGCTCTTTCACAAGAAAGAACTGCATCCAAGATTTTTGATAGGCTAGTTGAATCTGTCTCAAGGAGGAGA---TAGAA----ATAAAATGTATTAGTACTTTTGGGATAAAAAGAA--CTGCATATTTTAAAAATCACTAattcatacactgaacaaatatatattgattgcctaccaggtagaaggcattatactaagctctgcagattaaacagataaaagcaaaacctctgcctgtgtttaactt--aAAATGTGCTAAAAGACAAAGCTCCAGAAAAGTGACAGTTATAAAT--TCAGATAGATACTGTAAGAAAACAGATTGCTAAGAATTAGA----TCTATACTAGGCTCA------CGGAAAATTCCCCCGAGGGATGTATAGCTACACTGAGGAATGAAGAATGAAAAGGAAGCAGTTGAGCAAACAAGGAAGGAAAGCACTTTAGCCAGTCTGTGGCATGTGCTGAAACTCTAGTGTAGtctgcctctagccaagggagagcaacaggtat-gatttttcttcttagctaaaataactaaaatcaaaacacacaaaatacattaaac---aattttttagacactgtacattaggcaaagaagataataatccctgaaaaacagaaaaaaaaacacgaaagaaagcaaaccttatgaatgtttcagcttc--ctgccttgacagagattccgagacatgacacaggaagaaaaaactgaggtgggatctaccagactctcctggttacattgatgaagcttagagtctggtaaaaccaaagcagacagatattacagaacaaacactgaggaggagagagagatacagaatcaacggcaagaaaccccctgtcag-------------------tagttagcaaaattttgaaaattgcatgtgagctaggaaactaccta-----agaacaaaccgggtgggggtggggggtggcttataaaattagaggaagtcacacctggtgcccacacagtgccaagaagagcatctatttttatagatttgactgggaaaactcagacttcacaggaaaatgaatac s mm3.chr6 119207810 859 + 149950539 TCTTTTAAGTTCTATTAATCGTTTATATGAATAAACGGCATCCCGGATTTTCAATAGACTAGCAGTATCTG----AATGAGGAAAAATAAGAGACAGATAAAATGAGTGTGCAT-------ATTAGAAAAAGCCTGCATGCTT------GCGTTCACTCACTCAC-------------ACTAAGCGCCAACAATGAGGAACACATTACACTAGGCTCTGCAAATAACACAGGC--------GACCCTTGCCCTGGTTCAGCTTTAAAAA-----------------------AAAAGTGTAATTTATACACAATGGGGTTGTTCTTATA--AAACTGGAT-----AGAACTGGAGATCTTCATGTTAAACTAAACTCAGTCAAACATTCC--------ATGC-TAG----ATTTAAAACAGAAAAACAAGAA------------------------------------------------GCATTTAATGAGCCTCCATTTCAAtctgcttttagccaggatgaggtaacaattgtggagccatgttcccacttgaaacaacacaaacggagactgataaaatatcttaaat---aattctc-----------------------acgacaatgatccttaatagacaaatgaaa--------------------tttatgaacatcccaagcctgactctcttacc-----------------actcacggacaaagaactgaagtagagctccctagacttgctgagttgaggtgaatgagttcagagtctgat-aatcaaagacagcttgagatcacaggacag--accagagaggagccagccacacaga---------taaagaccctttatcaggtctatagagggcctggagtactcagcaaggaactgaacaagacacgaacagcaagaaactacattaaacaagaataaact-----------------atctgaaaagattagatgaaatctcatccaccgctc------ctataagaataatgtctattctgcttagtcaggctggacaaatacaa--tttacaagataatggacac s rn2.chr4 151590621 802 + 183307734 CCTTTTAAGTTCTATTAATCTCTTATAAGAATAAACAGCATCGCGGATTTTCAACAGACTAACAGTATCTG----GATGAGGAGA---CAGAGAC--ATAAAATGACTGCGC---------ATTAGAAGAAGCCTGCATGTT---------GTGAGTTCACTCAC-------------ACTGAGCGCCTACAAGGTGGAACCTGTTACAC---------CAGATAACACAGGT--------GACCACTGCCCTGGCTCAGCTT--AAGA-----------------------GAAACTGGAGCCGAGACGCCATGGGGTTGCTCTTAT---AAACTGGAT-----AGAACTGGAGATCTTCATGTTAAGCTAAAC----TCAAACATTCC--------ATGT-TAG----ATTTAGAACAGAAAAACAAAAT------------------------------------------------GCATTTAATGAGCCTCTATTTCAGtctgcttttagtcaggatgaggtaacaactatggagccacgttcccacttgaagcaacccacatgaag-cagataaaacagcttaaatgacaattgtc-----------------------atgacaACCATTGTTAACAGACAAATGAAA--------------------TTCATGAACATCCCAGGTTGGACTCTCTTACC-----------------CCTCACGGATAAAGAACTAAAGTCGAGCTCCCTAGACGTGCTTTGTTGAGGTGATTAAGT--------------------------CTGCGATCCCaggacag--accagagaggagatagcagcacaga---------ctaagaccct---gcaggactgcagagggtctagaacactcagccaagtgctgcacaatccacacagagcaagaaactacatc-aaccaggataagac-----------------agctgaaaagattagacgaagtctcgtccgctgctc------ctctaagaaga---tccgctctgctcagtcaggctggac-aatacag--tttacaggacaatggactc a score=76535.000000 s hg15.chr22 15242906 628 + 49476972 AGGCGCAGAGTGTCCTG-GGGGAGGCAGGGCCGGCCCTTCCCTCCATGGACACCCAGCTTTCCCACAGGCCCTACATGTCTGTGGGTTCCCTGCATGACCAGGTGATCTACCCGGACTCAGTGGAGGACATGCGAAGGAACGGCTACTCGGAGCAGGACCTGGAAGCCATCCTGGACATCGTGCACCCGCACCACACCCTGCAGCGGGAGGGAGGTAGGAGGCCTGGGGCTGGCAGCCGCCCTTTGTCCCA------------------------------CCCTGGCCTCTCCCTTGGCCTCCAGGGAGTGAAGATTATCTCAACATCCAGGAGTCTAAAGTGCCAGGTGCCACAGGGGCAGGGCAGAGGGTGCTACCTCTGAGGCCCGCCTACCAGGGAGGACCAACACCACACAGATGGCCCCAGGTGGCATGGGTGCTCTAGGGAAGGGGGCACCTAGCAGGGATGTGCACCTCATTGGGGGACCCAGGATACCCTCTCCCAGAGAAAAGGGGTCTGAGCTGAGCCCTGCAGAATGCTGAGTGGTTACCCCGTCCAGGAGCCAGG-GGCAGCAGGGCAGAGTGCGGCCTGCAGGCTTGGAGGTGTGAGAGGCTGGCTCACAGAGGGCCCTCTGGACCAGGCGGGAGCCT--AGGCTTT s mm3.chrX 57864668 558 + 149996094 AGGCACAGAGCA--CTGCTGGGAAACAGGGCT-ACCTTGCCCCTAGTGGACATGCAGCTTTCTCACAGGCCCTACATGTCCGTGGGCTCCTTGCGTGACCAAGTGATCTATCCCGACTCTGCGGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGCATCTCCGCCACATCCTGCAACGGGAGGGAGGTAGGGG---CAGGGCACACCCATGCCCTTTGTCCCAAGACTGATGGGGAACCTGTTGCCAACCTACCTCTAACTTCTATTCTAAGTCCCATAGGACAAGAGTTAACTCAGCATCCAGGAGTTCAAAGTGCC---TGCCAGGAAGGAAGGGTAAA--------------------------------------------------------CAGGTTGCTGGGGTG--CCAGGAAAGGGGACTTATAGCAGAG-CACTTACTTCATTGGGTG-CCTAGGAGACCCTCTGTCAAATAAAAGAG-------------------CAACCTAGGACAGTCACCCTATTGGGTATCCAGATGATACCAAGACAGGTTGCAACTGG--GGCTTGA------GAGATGTTGGCT--------GCCCTTGTGAAACAGTGGAAGTGCTGAGGCTTT s rn2.chr1 67964377 547 - 276301343 AGGCACAGAGCA--CTGCTGGGAAACAGGGCT-ACCTTGCCCCTAGTGGACATGCAGCTTTCTCACAGGCCCTACATGTCCGTGGGCTCCTTGCGTGACCAAGTGATCTATCCTGACTCTGCGGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCCATCCTGGGCATCGTGCATCTCCGACACATCCTGCAACGGGAGGGAGGTAGGGG---CAGGGCACACCAGTGCCCTTTGTCCCAA----CATGGGGAACCCGTTGCCAACCTACCTCTAGACTCTTCCCCAAGTCCCAGAGGATAAGAGTTATCTCAGCATCCAGGAGTTCAAAGTGCT---TTCCCGGAAGGAGGGGTGAA--------------------------------------------------------CAGGTTGCTGGGGTG--CCAGGAAAGGGAACTTGTAGCAAAG-CACTTGCTTTATTGGGTG-CCTAGAAGACCCTATGTCAAATAAAAGAG-------------------CAACCTAGGACAGTCACTCTATTGGGTAGCCAGATGATACCAGGACAGGTTGCAA---------TTGA------GAGATGTTGGCT--------GCTCTTGTGAGCCACTGGAAGCTTTAAGGCTTT a score=32646.000000 s hg15.chr22 15244145 249 + 49476972 CTCTGTGGCAG-CCTGAATGCCCAGGACCTGTGGCTGGCCAGCTTGAGCCGTTAGGATGGAGTTGAGCTGCAAGGAACAGAACCGGCCTCCCCGCAGTAGTGGTTAAGATCATCTGTGAGTTTATCCTACTGAGCTGTTAGGTCCCAAGAGAGCCAGGCCAcagttgccagggctggccctgctctgtgaaggccccaagtctctaggattttctaccatgtcactctgctgtgtgtggcctccattccc s mm3.chrX 57865449 247 + 149996094 CTCTGTGGTTGTCCTGAATGGTTCATATTTGTGGCTAATCATTGCAACCTTttaggattgaattcaactctaagtaacattatcatgctagtccccttagtggttcaaaacatttataggtttatcctactgtgcta-taaatcccaaaagaaacagaccagagttggaagg--cagaaatgttcactataggctcgagggatacaggctcttgtaccaagttatggtgctgtgcatggcttccaTTCTT s rn2.chr1 67965148 247 - 276301343 GTCTGTGGTTGCCCTGAATAGCTAGTATCTGTGGCCAGTCATTGCAACCTTttaggattgaattcacctctgagtaacagtaccatgctagtttccttagtggttcaaaacatttacagatttatcctactgtgtta-taaatcccaaaagaaacagaccagagttgggcag--cagaaacgttcactataggctccagggatccaggctctcgaaccaagttatggtgctaagcatggcttccattctt a score=332975.000000 s hg15.chr22 15244394 2812 + 49476972 aaagtcacctcatgatccaggagggctgctacagccctcacatcacgtccc-aggctgtagaatggaggaagta--gaagggaaggggcaaaaggtatgtgccttctatcttttaaggaaggttccagaagccaccatattgaatacttacagttatatctcattggccacaacttagtctcatgctcacacctcaccacaagaccacctgggaagcgtaatctctactctgggtggccatatacccTGTCGCCACTTCCAGCCCTGGGCCGCTGGGGAAGGCAGCATGGGCGAGAAGACAGGAGGGGCCACTTCTGCCGCAGCGCCCCGGCCCAATGGAGCAGCCGGCTCACCTGCTTGTTCAAGCAGCCCACTCGAGCCTTGCCAAAGTGCTGGCACGGGGCAGTGACAGGGGGCCCAACCCCTGTGGGTG------------------------------------ACAA-----GCCCCCGGTCTGGGGAGATCACTCAGGCCGCTCTGGA---GCTCTGTGCCAAGGAACTGTATGGGTGTCctggggctgcca-------------taaac--------cgcaggggtgga--tcatctcctgg-gtccagcagtcctagatcctggtaccagcaggttgggttccttccgggtgccatgacagaagtatgtgttccaggcctctgtcctcggctcgcagatggtccacttctccctgtatatcttcacctcgtgttccc-ctgtgcacgtc-ctctacccgcacaccccctttttatgaggaca-cattcatattgaattagggtccgctctgatgacctcatcttagtgtgatcacctctgcgaaggccctgtctccaaataaggtcacactgaagtgttggggcttggactccaccatgtctcttctgggggaaggcacgattccagtccCCACTCCTCCA-TGATTAATGC--CTGTCAGACAAGGACGCAGAGGCACAGGGGCCCTGTCCTCACAGCTAGCTCATTCCCG------------------CAGCTCCCCCAGCTCCCCGGCTGGCCCCCAGGTCTGGGTACTGGTGGAACTGAGCCAAGACCATTGCC-CCTGCCTAGGTTGGGAGGCTATGTGTGACTGGAAGGACGTCCTGCCGGGTGGCAAGAAGCAGAGAATCGGCATGGCCTGCATGTTCTACCACAGGTGAGCACTCCAGGCTGGCAGGCTCCCTGGGGTCCCC-------TGGA------AGGAGAA-------------------GTAGC--------AGCTGTGGGGAGG--------------------CCTGGGCTCAGTGGAGCCTGAGC--CGGGTTG-GGGTGTTGGGCC-----CTGGAGGGTGCACAG----------------ACTCTCCTCT----CGGCCCGGACCCCCAGGCCCAAGTACACCCTCCTGGATGAATGCACCAGTGCCATGAACATCGACGTGGAAGGCAAGATCTTCCAGGCGGCCAAGGACGCAGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTCCCTGTGGTAGGTGCCCTGTCTCCCTTCCTGGGGTGAGTGGGAGTGGCTG---CCTGAGGGGAGGAGGTGGCCTGTTGGGCCAGGCGGCAGCAGCAGGCGGCTGTCATCAGCAGCCCTCGTGCCGTGCCCCTGACCCTGTCCCTCTCCTGGCCAGGGAGTACCACACACACTTGCTACAGTTCGATGGGGAGGGCGGCTGGAAGTTCGAGAAGCTGGACTCAGCGGCCAGCCTGAGTCTGACAGAGGAGAAGCAGCGGCTGGAGCAGCAGCTGGCAGGCATTCCCAAGATGCAGCGGCACCTCCAGGAGCTCTGCCAAATCCTGGGCGAGGCCGTGGCCCCAGCGCATGTGCCGGCACCTAGCCCGCAAGGCCCTGGTGGCCTCCAGGGTGCCTCCACCTGAC----GCCACCCTCCCCAGCCCCTGCCCCGCCCCCAAG--CTCGAATCACATGAAGGAGACGGCAGTGCCCACCTGCGCACGCACCCC-GC--CCCTGCATGCCAGGCCCCTC--------------------------GTCCTAGAAGACCCTTCCCGACCTCGGGAAAGTAGATGTGGAGGGTGGCGCCCTGCGT--AACCCTCACCCTGTCCCTCCCACTCCCTGGGGGGTCTGTTCCACAGTGACTGGGCCCAGTCCAGGGCAGTGAGTCCTCTACTTTGCTCCGTGGAGGAAGCTGGGGTAC--AAGGGCCCAGTGCTGGCCACGCAGCAGCGCAGCCGAGCCCCAGGAG-----------------CCCCTCAGGCCA-CAGCC---------------CCTGACA-CAGCAGGTGGCCTCCCT--------------CCTCGTCAGT-CTCTCAAAGACCCCACGGT--CCATCTCCTGAGGGTGGCCAGCCAAGGCTCCCATCCCATGCGA-------TGCCATAAAAGCCGCCCAGTGGTACCCATGGTCACACAGAGCGCCTCACCTGCATCCTCTCCCCCACAGAAGCCCCGAAGATCCCACGGGAGAGGGACGCACAGCA-CTGCCTG---CAGAGTGAGAATGTAGGCCCCGCCCCCTCGGCCCCTCACCTCCTCTTTCTACAGCCTAATTTATTGGATTCCCTATTCGTAGCCATCTCCGTGGCCAATGTGACTACCCTGCCAGCAGCAGGGGCCGCCCAG------CCTCTGAGTCCCCTGGGGCCCCGGCTCCCACTGGTGCCAAACCCAGCCCCTGTGGCCGTCACCCCGCCAGCCTACACTGTCAGCCGCCACCTGGCCACACGGACCTCTGCTTGCTAGCTGGGAGTGCGGACACCATGTTCCCAGCTCAGTGCCAAACAGGGGTCACCAGGGGGAGC--TGTCTGCAGAGCCAGCGCCTGCCCGAGAGAGAG-----------CGCCTACCCACC-----GCCACCGTGTGCCTTTCCCGGGCCCTCAGCCCTCAGGC-CGGGTG---CCATCCCGA------GTCCCCCCAGTAAAAGCCTCCATTGGCAAATGCAGTCCTTCCTCCCTGCCTCAGAGTCTGGTGGTGTCTGCTGCGGGTCTTGGGGAGAGAT s mm3.chrX 57866094 2758 + 149996094 AAAGTTaccttataacccaatatgactgttgtagccatctcatccagtccctagactgtaggatggaggaagtgatgaaggaaagagacaaatgatacttaccttctgttttccca-gaaagttccatgggt--------------tctaca--tgtatgacaatgacaagaa-ttagcactaaggttaccctgcaccacagggcaagctaaaatgt-------------------TTCACATGCCCTAAGGACAAATCTAATCATG-------TAGAAACACAGGATGGTTGATAGAAAAGG-------ACTTCTGCCACAGAATCCTGAC-----AAATCACCTTCCTTACATGCTTACTCAATC------CTCTAA----GCCAGTGTAGTGGCACCAGGCTATGAGATGTGGCACATTTCCTCTGGTAA------------------------------------AGAACCTTTGCCCTCATCCCCTGCTGCCTGCTGAGGACAGTGTTGACAGGCTCT-TCCCTGTCAGCTCCTTAGGTGTTCTAGaactgcta-------------caggctcactagcttcaacagagaacttggtttcttggcattctggagtg--agattcgggtgtggcaatgctagctccctcacag--actatga-ggaaggatataccaagggactctg--ctcagctagtagtgagccaagttctcaatgtgtgccttcaaaacatcttccctctatccatgtctctgtatttaaatttccattttctataaaggtaccagttatactagattagggttcaccctcttgaattcaacc-----tgagcacatttggaaagattgtctctccaaa-----tcttactggggag-ggggggtaggactgtagcatgtgttttgtgggggag---aaaattTTTGTTCCAAGTCTTTCAGTTATTAATGCTATAGGCAGATGAGGACACAGA---ACAGAAGTC-------TGCAGCCAGACAAGTTCTGCCAGGGTCGAATGTGTCTCATTTAACCCTCACCCTACCCTGACTCCCA---TTGGGTTTCTGTTGAATTGAGCTGAGTCCTTCACCTCCTGCCCAGGTTGGGAGGCAGTGTGTGACTGGAAGGACGTCCTGTCTGGAGGTGAGAAGCAGAGGATTGGTATGGCGCGCATGTTCTACCACAGGTGAGCACTGCAGCTGCAGCGACTTTCAAGGACATTCAGTAAATTGGACCCAACAAGAGAGGAAAAAATGAGTTCTCCCAATAGGG-------AGCTACCTGAAGGAGTTTCACCTCT-CTCCCAGCTCTCCCCCAGTGCAGCA-GGGCTGTGGGTCACAAGTGTTTAGCCAGGAGCTGAAAGTTGGACAGTGATAGGTAATTCACAGCTTTCCCCTTTACCCACCCCCACCCTAAGGCCCAAGTACGCCCTCCTGGATGAGTGCACTAGTGCCGTGAGCATTGATGTGGAAGGCAAGATCTTCCAAGCAGCCAAAGATGCTGGTATCGCACTGCTCTCCATCACCCATCGACCCTCCCTATGGTAGGTGC-----------TCTTGGAATT-GTGGGTGAGGCTGCCACCTGAAGTGAGA------------------------------AAGCAGCTATGA----CAGCTTT------------------CTA-CCCTCTCCTGTTCAGGAAGTACCACACACACTTGCTGCAGTTTGATGGGGAAGGAGGCTGGAAGTTTGAGAAGCTGGATTCTGCTGCCCGCCTGAGCCTGACTGAAGAGAAGCAGCGCCTGGAGCAGCAACTGGCGGGCATCCCCAAGATGCAGGGGCGCCTTCAGGAGCTCCGCCAGATCCTTGGCGAAGCTGCAGCTCCAGTTC----------------------AACCCCTGG-----TCCCAGGAGTCCCCACTTGACTGGGGACCTTATCCCCAGCTCCCACCCT-TCTCCAGGCTCTCGGATCACATGAAGGAAGCT------CCTCCCCTC-------CCCC-ATTGCCCTGCATGCCTTACCCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGAC----CCCACTCTGGGACAGGTAGATATGAATGGGGACACACTGCATTCCACCTTCACTCT------------------GGGTTCTGCTC--CAGGAACTCTGCCCTGTTCAGGGCAGTGTGTCTTTTACTTTTCCCTGGGGAGGGATGGAGGGTTTGGAAGTCCCCAGTCCTGACTCTATACCAGTATGGCTGAGCCATAGGAAGTAAGCAGGAGCTGCCTCCCTTACTGCCAGCAGCCAGAATGTGTGGCAACCCTGGTAGTTGTGGGTTACATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCCATCCCCT-TGTGTGACCAGCCAATGCCCCTGTCCCACAGGATACCCCCTGCCATGAAAACAGCCTAATGGGGCCCAGGATTAGACAGGGC-CCAAA---GTGTGCCCTTCCCCATGGTTACCCA--------------AGAAGG--ACAGAGTT-CCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTCCACC-------TCTACAACCTAATTTATTGGACTCCCAGTTTATAGTTGTCTAAATTGCCAACATGAGTACCCTGCCAGCA-CAGGAGGTGACTGGGTGGTCCCTTCAATCTACCCAG-----------TCTCTGGTGCCAAACCTGGCCCTT-------------CACCAGCCTATACTGCCAGTTGCCACTGGG----GGTGCCCTCTGCCAGCTAGGCAGAAGTGAGGGCACCATGTTCCCAGCTCAGTGCCAAAGAGGGGTCA-CAGGAGGTGCTGTGTCTGCTAAACCAGC-CCTCACCAAGAGGGAGACGCCCC----CACACACACACCCTACTGCCATTGTGTGCCTTTCCTGGGCCTTCAGCCCTCCAGCTGGGGTA---CCCCCCTCA------GTCCTCTCAGTAAAAACCTc---tggaaagtacaatcctgcctcctgaact----------tggtgtctggtataagttctggggagtaag s rn2.chr1 67965395 2798 - 276301343 aaagtcaccttataacccaatatgactgctatagccatcatatccagtccctagactgtaggatagaagaaggggtaaaggaaagagacaaaggatacttatcttctgttttccca-gaaggttccatgggt--------------attaca--tgtacgacagtggctagaa-ttagtactatggttacccttcaccatagggcaagctaaaatgt-------------------TCCACATGCCCTAAGGACAGTTCTAGTCATG-------TAGAAACACAGGATGGGTGACAGGAGAGG-------ACTTCTGCCACAAAGTCCTGAC-----AAATCACCTTCCTTACATGCTCACTCAGTC------CTCTAA----GCCAGTGTAGTGGCACCAGGCCATGAGATGTGGCCCAGTTCCTCTGGTGAGCCTTTGTCCTAGAGAGAACATTCTAACCATCCCTGAGGATCTTTGCCCTTGTCACCTGCTTCCTGCTGAGGACAGTGTTGACAAGTTTT-TCCCTGGCAACCCattaggtatcctgggactgccatgactaagagccacagacttactagtttcaacagagaacttggttttctggcattctggtgtc--aaatttgggtgtagcaatgctatctccttcacag--actatga-gga----------------ctctg--cttagctagtagtaagtcaacttct----gtgtgtcttcaaaacagtttccctctatacatgtctctgtgtttaaatttttattttctataaagatatcagttatactggattagggttcaccttcttgaactcaaac-----tgagcacatttggaaagattgtctct--aaa-----tcctactaggg-------ggtagaactgtagaatgtgttttgtgagggag---aaaattTTTGTTCCAAGTGTTTCATTTATTAGTGTTACAGGCAGATGAGGACACAGA---ACAGAAGTC-------TGCAGCCAGACAAGTTCTGCCAGGGTCAAATGTGTCTCATTTAACCCTGACCTTATCCTACTTCCCA---TTGGGTTTCTGTTGAATTGAACTGAGTCCTTCACCTCCTGCCCAGGTTGGGAGGCTGTGTGTGACTGGAAGGACGTCCTTTCTGGTGGTGAGAAGCAGAGGATTGGTATGGCGCGCATGTTCTATCACAGGTGAGCACTGTGGT------GACTTTCAAGGACATTCAGTAATTTGGACCCAACAAGAGAG-AGAAGATGGTTGCTCTCAGTAGGAGGAAGACAGCTATGTGAAGGAGCTTCACCTCTACCCCCAACCCTCCCCCAGTGCAGCA-GGGCTATGGGTCATAAGTGATTGGCCAGGAACTGGAAGTTGGACGGTGGTGGGGAATTCACAGCTTTCCCCTTCACCCACCCCCACCCTAAGGCCCAAGTACGCCCTCCTGGATGAGTGCACTAGTGCCGTGAGCATTGATGTGGAAGGCAAGATCTTCCAAGCAGCCAAAGATGCTGGTATCTCACTGCTGTCCATCACCCATCGACCCTCCCTATGGTAGGTGC-----------TCTTGGAATT-GTGGGTAAGTCTGCCACCTGAAGTGAGA------------------------------AAGCAGCTGTGA----CAGCTTT------------------CTATCCCTCTCCTGTTCAGGAAGTACCACACACACTTGCTGCAGTTTGATGGGGAGGGAGGCTGGAAGTTTGAGAAGCTGGATTCTGCTGCCCGCCTGAGCCTGACTGAAGAGAAGCAGCGCCTGGAGCAGCAACTGGCAGGCATCCCTAAGATGCAGGGGCGCCTTCAGGAGCTCCGCCAGATCCTTGGCGAAGCTGCAGCCCCAGTTC----------------------AACCTCTGG-----TCCCAGGCATCCCCACTTGACTGGGGACCTTATCCCTAGCTCCCACCCT-TCTCCAAGCTCTCGGATCACATGAAGGAAGCTGCAGCTCCTATCCTC-------CCCTTACTGCCCTGCATGCCTT-CCCCTCCCAAGCCTCCTAGCCAATTACCTGCTTTCCCTGAAGAC----CCCACTCTGGAGCAAGTAGATATGAATGGGGACACTCTGCATTCCACCTTCACTCT------------------GGGGTCTGCTC--CAGAAACTGTGCCCTGTTCGGGACAATGTGTCCTTTACTTTTCTCTGAGGAGGGATGGAGGGTTTGGAAGGCCCCAGTCCTGACTCTATACCAGTATGGCTGAGTCATAGGAAGTAAGCAGGAGCTGCC-CTCTTACTGCCAGCAGCCAGAATGTGTG--AAGCCTGGTGGTTGTGGATCACATCCCTCTTAAAACCCAAACCCTCGTCATTGCTTTGATCCATCCCTTTGTTGCCATCCCCT-AGGGTGGCCAACCAATGCCCCTGTCCTATAGGACACTCC-TGCCATGAAAACAGCCTAATGGAGCCCAGGATTAGATGGGGC-CCAAA---GCGTGCCCTTCCCCATGGTTACCCC-------------CAGAATG--GCATGGTTACCTCCTGAGCCATGAGAAGAATGTAGCCCTGGCCCTCCCACTCCTCCACC-------TCTACAACCTAATTTATTGGACTCCCAGTTTATAGGTGTCTAAATTGCCAACATGAGTACCCTGCCAGCA-CAGGAGGTGACTGGGTGGTCCCTTTAATCTACCTAG-----------TCTCTGGTGCCAAACCTGGCCCCT-------------CACTAGCCTATACTGCCAGTTGCCACTGGG----GGTGCCCTCTGCCAGCTAGGCAAGAATGAGGGCACCATGTTCCCAGTTCAGTGCCAAAGAGGGGTCA-CAGGAGGTGCTGTGTCTGCTAAACCAGC-CCTCACCAAGAGGGAGACCCCCCCACACACACACACACCCTATTGCCATTGTGTGCCTTTCCTGGGCCCTCAGCCCTCTGGCTCTGGTGACCCTCCCCCCACCCCACGTCCTCTCAGTAAAAACCTC---TGGAAAGTACAATCCTGCCTCCTGGACT----------TGGTATCTGATAGAAATTCTGGGGAGTAAg a score=4708.000000 s hg15.chr22 15247206 69 + 49476972 GGAGGAGAGGGAGTGGGTTGCCTGTGGGGGAAAG----AGTGAGTTTGGGAAAGGAGTGGGCCTG-ACCCCCAA s mm3.chrX 57869001 67 + 149996094 CAACAACAACAAAAG------TTCTGAGGAGAGGTCACAATGTTGTTGGGAGAAAAGGAGACCTG-CCCCCAAA s rn2.chr1 67968335 68 - 276301343 caaCAACAACAAAAG------TTCTGGGGAAAGGTCAAAATATTGATAGAAAAAGAGGAGACCTGCCCCCCAAA a score=8580.000000 s hg15.chr22 15247470 82 + 49476972 AGAGAAGGGATGTCTAAGCTGCCACACA-GGGTGCTGCTGGCCCTTCTAGGGAGAGGAGGCCACTTGTGCAGGGGCCTGGGGG s mm3.chrX 57869297 83 + 149996094 AAAGAAGTGATTCCTGGATTGAGTTGCACTGGCGCTTCTGAACCTTCTAGGAAGAAGGAAAAACGTATCCAAAGGCCCAGGGG s rn2.chr1 67968648 81 - 276301343 AAGGAAGTGATTCCTGGATTGAGTTGTACTGGTGCTTCTGAACCTTCTA-GAAGAGGGAAAAGTGTGTCC-AAGGCTCAAGGT a score=15771.000000 s hg15.chr22 15260183 189 + 49476972 TAAAGTATATTTTT----GTTTTCAAAAATTGTGTGGTATGCATGAGTTTTATAGCAAGAAAAAATTATAACTTATTTTGAATTAAATTCCATTGTTTTAAAATTAAGCAATAGGTGAGCTCGAATTTTAAGCTCCAAAAATGACCAAGAACTT-CTTTGATTCCCTTTTAAACCTGTTGTCTGTTTTAGTCAC s mm3.chr3 24644436 168 - 160674399 TATATCACATCTTTTAACATTTTCACGAACTTTACTGT----ATGAGTTTTATAACATTGTAAAAT------GTACTT-GCAC----GTACATTTTTTT--ATTTAAATGAGAAATTAGTTCCAATGTTGAGCTCCACAGA-AATCAAAAGCTTATTTTGAGCCCTTTTTAAAGTT--------TTATAGTCAC s rn2.chr2 222420065 168 + 246339213 TACAGCACACCTTTTAATATCT-CACAAACTTTACAGT----ATGAGTTTTATAACATTGTAAAGT------TGACTTCGCAT----GTACATTTTTTT--ATTTAAATGAGAAATTAGCTCAAATGTAGAACTTCATAGA-AATTAAAAGCATATTTTGAGCCCTTTTTAAAGTT--------TAATAGTCAC a score=119788.000000 s hg15.chr22 15260387 1107 + 49476972 CATAGGTTTTTACTTAAAATC---TAAACCAAATAATGAAGTAA-CTGTTTAAATTGTTAGATTGTGAATATGGCTCAGTTGGATGTAAAATGTAACTATTACTTAGGAAAACGATCTGATTTTTTTTAGCAAGCGATATTCTTTCTTTCTGAGAGCATTTCACAAATGTTTCTACCTAATGAATCATACTTTAAAAATAACACTTGTAATTCTTTTTTCTTTTTAGTTTCCTGCCTGCGATGGTTCACATAATAAACACAATGAATTGACAGGAGATAATGTGGGTCCACTAATACTGAAGAAGAAAGAAGTATAATAATAATAA------------------C--AATATTTTCTCATTCTTTGTGTATAGAAAA---TTTTAAAATGGTGGTCTTAATTATTACTACTGGTTGAAAAATTATTTCTTCCAATTTATTTTCTTCCATCACTACTGTTTGTATTTGATCCTTTGTCTATTCAGTCACTTAATTAGAAATTAAATTGTCAAGCCTCTTATTCTGACTTCAAAGGATTAATGTATCTTCCAACAATAAAAT---CACTTCTGATTTTAATCTA-GGAAAACCTAAATTGTGGCTATGGATCCAAAGCTGTTTGTTTCTTTGAATATCAATATTTTCAACAGGAT-CTTGTTTTT----AAAATTCCCGCTTACATTGTTAAATATGTTATTTTTTCATATCTCTTTTGGTTTTGATAATCTGAAGTGTTTTTTTCTCCTTTTGGCCTTCC---AAACTGCATT-TGTTTAGGTGAATTAAGAAAAAT-ATTGCCATCAAGAATTACTTGTGTTTTCACAGAGATAGACTCTTTGCTTTACAGAGATTGTTGGGTATTTAATATGAATATCCCAGCTTTAGAAAAGAAGTAAACTGGATACAAAAAGTTCCATTGAGGAACAGTTATTTACAGTATAAAAGATTTGTTTACTTTACAAAAGGC---TTGTGTCTGTT------------------------------TGTGTGTGTGTATA----------------T---------TTTAAACTGTTTGACTCAGTGGCAGCTGGGGTGGAATGGCAAGAACACTTACAACCAAGCTCATGGGCTGCTGCAATTTGAAGGTCAATTGGTAATAAATATAAG--ACATATTAATTCATATTAAA-------ATAGTTCTGTGTTCAAAATTGTGGTT s mm3.chr3 24644678 1102 - 160674399 aagagttttctattttcctTCA--TTGCCTGGTGCATGGGGTGG-GGGTGGGGTCTGTCAG-----GAA----GCTCTGT--GATG--------AACT----------------------TCTTTTGTAGTAAGTGGCACACTGGC--TCCAAGAGCATTTCACAGATGTCCCTACTTCATGAATCTTGCTGT-AAAATAACATTTACAATTC-TCTTTCCTTTTAGTTTCCTGCCTGTGATGGATCCCATAATAAGCATAATGAATTGACAGGCGATAACGTGGGTCCTCTCATCCTGAAGAAGAAAGAAGTATAGCAGTGGCCATTTGAGATGAAACTCTGACAGAGTGTTTCCATGTGTGTTGTGCATAGAAAA--GTCTT----TGGAAGTTTTAACTCTCAGTACTGGTTGAATAATTATTTCTGCCAG-TTATTTTCTTGCTACACTACTGCTTATATTTGGTACTTTATATAGTCAGTCATTTCTATAGAAATCAGATGGTCAAG--TCTCATTCTGAAATTAA--GTTTAATGTGTCTTTCAACAATAAAGTCAGCACTTCAGATTTTAATTAATTGGGAATTTAAAGTTTGACTGTGGGCCAAAAG----TTATTTCTTTGTATATCAGTA-TTTCAACAGAATACATAGTTTTAAA-AAAATTATCCTTTGTTCTGTTAAATGTA-----TCTTTATATTGTCTT--GTTTTGCTCATTTGAAGTCATTTGCCATTTTTTTGGCCTTTTGTGGAACTCTGCTGCTTTTAGAAGAATTATGAAAAATAATTGCCATCAACAA-------TATTTTGAGGCAGTAAAACCCCTTGTTTTATAGAGACTTTCATCTTATTACCATGATTATCCCAATTTC---TAAAAAGTAAATCAGATATAAAAATTTCCAATTAGAAACAATTATTTTCATCATAAAAA--TGGTTCACCTTACAAAAGCCTTGTtgtgtgtgtgagggtgtgagggtgtatatgtgtgtgtgagtatgtgtgtgtgtgtgagagagagagagtatgtgtgtgtgtgtgtgGTGCTTAACTTGGAGACTGCTGGG------TGGCAAGAGCACTCATGA---------------ACTAGAGTTTGAAGATCAGTTAG------ATATTAA--ATAACTGAATTTGCATTAAAATGATGCATAGTTCATTGCTCAAAATTATGTTT s rn2.chr2 222420297 1031 + 246339213 acGGATTTTCCAGTTTTCCTCACATTGCCTGAGGCATGGGACAGTGGGTGTGGTCTGTCAG-----GAA----GCTCTCT--GATG--------AACT----------------------TGTGTGGTAGTGAGAGGCACACTGGC--CCCATGAGCTTTTCACAGACGTCTCTAGTTCATGAATCCTGCTGT-AAAGTAACATTTGCAATTC-TTCTTCCTTTCAGTTCCCTGCCTGTGACGGGTCCCACAATAAGCACAATGAGTTGACAGGCGATAACGTGGGTCCTCTCATCCTGAGGAAGAAAGAAGTATAGCAGTAGCCA-CGGAGACGAACCTCTGGC--AACGTTTCCGCCCTTGTTGTGCATAGAAAAAGATCTT----TGCAAGTTTTAACTATTGGTACTGGCTGAATAATTA-TTCTGCCAG-TTATTTTCTTGCTACACTACTGCTTATATTTGGTACTTTATATATTCAGTCATTTGTACAGAAATCAAATGGTCAAG--TCTGATTCTGAAATCAA--GTTTAATGTGTCTTTCAACAATAAAGTCAGCACTTCAAATTTTAATTAATTGGGAATTTAAAGTTTGACTGTGGGGCAAAAG----TTATTTCTTTGCATATCAGCA-TTTCAACAGAATGTATATTTAAAAAGAAAATTCTCCCTTGTTCTGTTAAATGTAT--CTTCTTCATATTGTCAT--GCTTTGCTCATTTGAAGTCATTTGCCA-TTTTTTGGCTTTCTGTGGAACTCTCCTGCTTTTAGAAGAATTGTGGTAAAT-ATTGCCATCAAGAA-------TACTTTGAGGCA-TAAAACCCCTTGTTTT------------ATCTTATTACAATGATTATTCCAATTTC---TAAAGAGT-------------AAATTTTCAGTGAGAAACAACTATTTTCATCATAAAAA--TGATTCACCTTACAAAAGCTTTGTTgtgcgtgcg--------------------------------tgcgtgcgtgcg----------------tgcgtgcgtgtgtgcgGTGCCTAACTCGGTGACTGCTGGG------TGGCAAGAGCACTTATGA---------------GCTACAGTTTGAAGATCACTTAG------ATATAAAGCATATCTGAATTTGCATTAAGATGATGCATAGTTCATTGCCCAAAAT--TGTTT a score=18572.000000 s hg15.chr22 15261793 124 + 49476972 TACAAAAAAGTTTATGAAATAAACGTATCGGAGAATCTTTAAAATTTTTGTGCTTTTTAATCCTACTATTATGAGCCTTTTTAGTTTCATCTTACATTACTACTCTCATAATAGCTATCCTTAg s mm3.chr3 24647191 117 - 160674399 TACAAGAAAGTTTTCCATATAGGTTTACTG--GAATTTTTGAATTATTTGTGATTTT--AGCCTACTATCAGAAGTCTCTTTAGTTTTATTTTAC---AAGTCTCATGTAAGAGCTATTCTTAA s rn2.chr2 222422861 117 + 246339213 TACAAAAAGGTTTTCCATATAGGTTTACTG--GAATTTTTGAATTATTTGTAATTTT--AGCCTACTATCAGAAGTCTTTTTAGTTTTATTTTAC---ACATCTCATGTAATAGCTATCCTTAA a score=125520.000000 s hg15.chr22 15262190 1582 + 49476972 AATTTATTCAGTTC---ACTTTGCTTTCTTTTTATAAGAAGGTACAAGAGGCAGAGGTAATCCTTCTAGAaataaaactaactgttattgagaacttgtatgtaccagacgctacaataagcatggtacttgggtttttaatttaTTACATGTAATGTCAGTAGGTTAAATTATATGATCAGAACAACTTCATGACCAGCAGCATGTATTTTAGAGTTAGAAATGTAGTCTG---GTTTTTGAGAAGTTTTACAAGGTGTATG-TCCAAAATTATTGTTCTTTCCTCACATGTCAGTGGG----------GGATAAATACAGCATTGCTCTCACTTCTTTGACTCTGGGTACTTTTTCATATACATTTTCTTCAACACTGTTAAGGGGCCTC----ACTGTCAGATTAACCAATTATTTTTCCACAGTTGGTCACCAGACTTTGGAAAAAATCCACCTCACCAAAATTTTGGATATCCTGGTCTGTG---------GTCATGAAATGCTTTTCTTTTTGTAAAATCTGTCACTGCGTCTCACAGCAACTTGTTTTCACACA---TGTTCTAGTGGTTCCCATAACTT--AGATTTTACAGGAGGCAAATATGCTAAAAATGAGGAGACTAAAATGA-ATGACCAACTTTGAATTTTGTCAAAT---AACATTG---AAAATGAATTATCTCATAAAAGGTAATTTTA-ATACCCCAAAAGTAAGATGGTTATACTCTCAGAATAAAGACTTTTTCCCTGCCACATTTTCAGTTGTTAAAATATGCTAAGAGCTATGCCCATATCTTTTCCCACCTGTGCAAATTTTTCAGAAGCCTAGGGTTGGTAGTAAGCTGTTGCTTTAATAACTCTTTTAAATAAGCATTATTAGCAGTTTCCATTACTTCTTGTAAATTTACACAATTTTATCTTGTCCATCTTTAAAAAATAGCCATCTAATAACCAAATGTATTTCAATTGATACAATATAACTAACTTGTAGAACTTGAGGATAAGTGGTAAAGGGAAAAAAAAGTAACTTGGCTTTTGAAATACGTCTTGGGTTTCTAGAGCCTTCAAAATACAGCCCTGTTGTTACTGTGTCACATTATGATTGTTTTGAGGGCTACTT---CTGCTTACCTAGGAAACTACTCATGCCTTACTCAGCAAATGAACACCACCATTACATAAACATCAGGTATCC-AAAAGTGTTAGCAGGCTTGAGGTATGAATGATTCATTCATATGGGTAATTAAG-CAAGTTGAATTATGAAAAGCACCTCACAATTCACACAATTCAGCTTTGAGTTGAAGGCCAAATATGATGAT----TCATTAAGTTGCCTTTGTATTTTGTAACCTAATTTGTTAATAAG-TTACAGGAAGCCAATTAAGCCAGCTGCTCATCTATATAGTACTACCTTCCTCATTGTGATTCCATAGTCTTCCAATAGAAATGTGCTATCAGAATCTGTA----TAAAGAGTTTGTAAATTCCACTATTTAACAAGGTTCTTAAGAAT---------TTAGGTGGA---TGTTTTGTTTGATACCTACCAAAGAAACTTAACTAATTGTATAACACTTAACCCATTTAGAATTCAGTTGTGGCAGCATAACCAATCTGGAGAGACCAGGGGA s mm3.chr3 24647927 1379 - 160674399 gATCTGTCCATCTCCTGAACCCGTAGTCTTCCCAT--GTAGGTGTAAGAAAC--ATTCCATCTTTGTagtaataaggctaagaattattgagtatttatgtgtaccagacattacatcaagcATGG-ACAGGGCCCATAAATGTATTTC--ATAATGTCAGTGAATTCCTCTATGTGATTTTACCTTTCTTGTGACCAACAGAAAG--ATCCAAAATTAGAGTTGGAAAATATCTGTGCTGAGGGAGTTTTACAAGGTCTGCACTCCAAGCTCATAA--------CTGCCTATAGGCAGG----------GGAGAGGTAGAGCCTTTCT----CGTCTGTGGCGGTGGGGTG---TTCAGAGACTCTTGATTCAGTGCCCCCAAGCGCCTGCCTTCACCATCAGATTAACCAGGTACTTTCCCACAGATGGTCA-------------------AATCCCAGCATGAGTTCGGATG-CCTTGTTTGTG--------------GAAGCCATTCTGCT-CTGTAAAACCA-TTGCTACAATGCACAGCAACAGTCATTGAAAAA---TATTCCAGCTGCTGCCATCCTTTTTGGGCTTCACAGAAGGCACATTTATTGGAGATTGGTGGTCTAGAATGAGATGGTCAACCTTTAATTTTGTCAAATAAGAACAGTGAGAAAAGTGAAAACTGTCTCAGAATGTAATTCTAAGTGCCCTGAGAAGAAAATAGT--------------------TCCCTCCCCTCCACATTTTCCACT-TTAAAACATACT----GTTA-------------------CTCTGC-------CCAGACGTCCACGTCTGGGCGCAGGCTGGGGTTTTAGTAA-GCTTTCACAGGAGCATAAG----AATTGCCATCC---TCTGTAAATTCCCAGAGTTCTATCGTGTGCTGT------ACACAGGCACTGAATAACCACACACACATGAATTGATA----------AACC------ACTTGA----------------------------------------------------GTGTTGTAGAACCTTAGAGAAACAGCTTTCTTA-------GCTTCCTCACGATTGTTACGGGGGTCACCTAAGCTGCTGAAGTAGAGCACTACTCATTCCTTACTCAGCAAACAAGCACCAGCCTTACA-AAATACCAGGTATCCTGGGAGCATTAGCAGG-GTGATGGGCTAATGACTCACTGGTGTGGATAATTAAG-CAAGATGTGTTGTGGAAAGCACGT---------CACAACTCAGCTGCGAGTTTGCTGCC--TCCTGGTGATTCACTCACTGAAATGCTTTTGTGTTTTGTAACCTAATTTGTTAATAAGTTTATAGGAAGCCAATTAAGCTAGCTGCTGATCTGTA--------------TCATTTTTGTTTCATAGTCTTTGATTAGAAATG-----GCAGA--CTGTATTCCTAAACTATTTTAATGCTCCACTCCAAAACCAAAC-----CGAAC----------CAGGTGAC---TGTTGTACTCGATACCTGCCCAACAAGTTTAACTAATGAGAT-----TTTACTCATTCAG-ACTCATCAGGGCCTGCATCACCAATCTGAAAAGGCCTAAGGA s rn2.chr2 222423575 1356 + 246339213 GAGCTGTCCATCTCTGGAACC-ATAGTCTTCCCAT--GTAGGTATAAGAAAC--ATTAAGTCTTTGTGGTAATAAAGCTAAGAATTACTGAATATCTATGTACACCAGAC--TACATCAAGCATGGTACTGGGACCGTAAATATCTCAA--GTAAAGTCAGTGATTTCCACTGTGTGATTTTACCTTT------------------------------------GGAAATTATCCGTGCTGGGGGAGCTTTACAAGGTCAGAGCTCCAAACTCAGAATTCTT--CCTGCCTAAAGCCGGGAGTTGGGGGTGGGGGAGTAGAGCCTTGCT----CTTCTGTGGCCGTGGGGAC---TCCAGAGACCCTTTATTCAGTGCACCTAAGCGCCTGC----ACTATCCGATTAAC--------------------------------------------AGCTCAGCACAAGGTCGGGTG-CCtttttttttttttttttttttttGTGGTCATTCTGCTTCTGCAAAACCC-TTGCTGCAATGCACAGCAACAGTCTTTGAAAACAATTGTTCTAGTTCCTGCCATACTTT--AGGCTTCCCAGAAGGCACATTTATTGGAAATAGGTAGTCTAAAATGAAATGGTCAACCTTTAATTTTGTCAAATAAGAACAGCGAGAAAAGTGAAAATTGTCTCAGAATGTAAGTCTA-GTGCCGTGAGAAGAAAATAGT--------------------TCCCTCCCCTCCACATTTTTCACT-CAAAAACACACT----GTTA-------------------CTATACTA--TTCCCAGAAGTCCATGTCTGGTAGCAGGCTGGGGTTTTAGTAA-GCGTTCCCATGAGCGCTAG----AGTTGCGATCA---TCTGTAAATTC--AGAGTTCTGTCGTGTCGTTT------ACACAGGCACTGAATAACCAAACACACAGGAACTGATA----------AACT------ACTTGA----------------------------------------------------GCGTTCTAGAACCTTCCAGAAACAGCTTTCTTA-------CATGACTCACGGCTGTTATGAGGGCCACCTAACCTGCTGACTTAGAGCACTACTTATTCCTTACTCAGCAAACAAGCACCAGCCTTACA-AAATACCAGGTATCCCAAGAGCATTAGCAGG-TTGGCGGGCTAATGACTCATTTGTGTGGATAATTAAGCCAAGTCGTGTTGTGGAGAGCTCGT---------CACAGCTCAGCTGCGAGTTTGCTGCC--TCCTGATGAG----TCACTGAAGTGCTTTTGTGTTTTGTAACCTAATTCGTTAATAAGTTTATAGGAAGCCAATTAAGGCGGCAGCTGATCCGTA--------------TAATTTT--TTTCATAGTCTTTGATTAGAAATG-----TCAGA--CTGTATTCTTAAACTATTGTAAAGCGCCAGTCTaaaacaaaac-----aaaacaaaacaaaaACAGGTGACTGTTGTTGTATTCGATACCTACCCAACAAGTTTAAGGAATTGGAT-----TTCACTCATTTAC-ATTCGGCCGGGGCTGCATCGCCAATATGAAAAAGTGTAAGGA a score=12286.000000 s hg15.chr22 15264477 82 + 49476972 AGTCTACTTATTCTTACTTCACATTGAATTCTAACAAGTTAGGTTATCTGATTTCTGCTTCCTAACAAATCACAAGTATCGA s mm3.chr3 24649358 81 - 160674399 AGTCTACTTAGTTTTCCTTCATAGCAAAATCCAATTAG-TTGGTTATCTGTTTTCTATTCCTAAACATAACACTTGTATTAA s rn2.chr2 222424983 82 + 246339213 CTTCTGCTTATTTTTCCTTCATAGCAAATTCCAGCTAGTTTGGTTATCTGTCTTCTATTCCTAAACATAACACTTGTATCAA a score=15676.000000 s hg15.chr22 15264568 309 + 49476972 GCAGAAG-GGGTGAACTATAAAATGTGACAGCTG-ACAGCAAGGCAGGGGAACAAAAATAAATTTAAGGTGAACATTAAAAGCA------TAGCAGCTTGAGACAATTCATAGGATTCTGCATGCAACCGTCTCTGAGGACATCACTGTGATCAAATTATACAAGTGATGTTTAGTGATGAATTGGAATCAAGATAAGTAGTATGTGTTATTTAAAAAGGCAGGATATGTGTTGCATTCGGTGGCAACAATTTCCCCTTAGCTATTTAGTTAAAAGCTTAGTGCTTAACTT----------GTTGGAAAACTTATGCATGAAATATA s mm3.chr3 24649776 219 - 160674399 CCAGAGGCAGGTGAACAATAAAATGTGAGTGCTG-AC-------CAGAGAAATAACCAAAAAAA-CAAGTGAGAATTGAAAATGAAAGGCGAGCAGCTTGAGA-----------------------------------------------------------------------------AATTTGCATC-----AGGTAG--TGTGATAGTTGAGAAGGTAGGA----TGTTACATTCACTGAT-ACAGTACCCACTT----------TTGAAAGCTTAGTGCTAAACGTGGTATATCTAGGTGGAAAAGGTACCCAGGGTGTTCT s rn2.chr2 222425076 290 + 246339213 CCGGAGGCAGGTCACCAATAAAATGTGACGGCTGCAC-------CAGAGAAATAACCAAAAAAAACAAGTGAGAATTGAAAACAGGAGGCGAGCAGCTTGAGATTTAATGGAGAACCCTGCATCT--CGGCTCCTGGGGACATCTCAGCGTCGGAATTCTACAAGTCACGTTTCATGATAGATTTGCATC-----AGGTAG--TGTGAAAGCTGAGAAGGAAAGA----TGTT-----CACCCAT-GCAGTACCCACTT----------T-GAAAGCTTAGTGCTTAACACGGTACAGCCAGGTGGAAAAGGTATCCGGGGTGCTCT a score=30510.000000 s hg15.chr22 15264887 405 + 49476972 ---------CCTTGATGACTGGAGGCTTTATCACAGGAAGTTTTCCCATTCAATTGAAACATTTTTCAAGCTTAATGACTATAATTTACTACATAATTTATTTTGTTAAAGTTTGAGGAAAACTAAATAAAGAAGTAGCAATTTAAGTCATAATAAATTTTGTTAGATGACTTCTTCCACTTTAGGGGGAATTAAAAATCTTGTTTAAAAACCACATGTGCAGCAG-TTCTGTGACTGCCTCAACACCTAGTTGGCCATATAGTCCCTTTGCACCACAGAGGTTGGAGTATAGAATATG-CCCAAAGCTGTTTTGTTTTGTTTTAACTATGCTGCATCATCTGAGGTTGTGTTAACATAGTTTGTCC-TAATAGTCTTTTACTGGAAAG---------------------TTGCTATATTTGATTATGT--------TCAGCAAGT s mm3.chr3 24650153 341 - 160674399 CCGAGATGTTCTTGGTATGTGAGGGCTTCACTGCAAGAAGTTTCCCCATTGGGCTGGAACA-TTTCCAAACTTAATTGC--TAACTTACTGC-----ATAATTTTCTA----------------AAATACGACAGGTGGTGTTTGAATCGC-ATAGATTGTGTTAGA-GAATTTGCCCGCTACAGGGGCAATTGA-------------AAGCCAAATGTGCAGCTG-TGCCGCGACTGCCTCCACG-------------------TCTCTGGTGCACACAGACTGGATGAAGGAGGACA-CCTGTAGCTGCTTT-CTGTGTTTAA------CTGCTGCATCTGCCCCCAGGCT-------TTTGTTCATAGTGGATTTTGACTGGAAGC-----------------------CCTATTTTTCATTTTAC--------TCAACAAAT s rn2.chr2 222425354 392 + 246339213 CCGGGGTGCTCTCGGTATGTGAGGGCTTTATTGCAAGAGGTTTCCCCACTGGGCTGAAACA-GTTTGAAACTTGATTGC--GAACTCACGGCATGATATGATTTTCTA----------------AAATACGGCAGGCGGTATTTAAGTCAC-ACATATTATGTTAGA-GAATTTGCCCACTGCAGGGGCAACTGAAAGCCCTGTTTTCAAGCCACGTGTGCGACTGTTACTGTGATTGCCTCCACG-------------------TCTCTGGTGCACGCAGACTGGATTAGGGAGGACATCTTGTTTCTGCTTT-CTTTGTTTAA------CTGCCGCATCTGACCCCATGCT-------TTTGTTCGTAATGGGTTTTGACTGGAAGCTTGACttttttttttttctttttctttttttttATGTCACTCAGTATGTCAACTAGT a score=3188.000000 s hg15.chr22 15275219 45 + 49476972 TGCTGTTACACAACGGAAGTAGCCAGGAATGTGTTTGGCAGCCAA s mm3.chr1 128352279 45 - 195869683 TGCTGTTACATAACAAAAGTAGGCAAGAATATGTTTGGCACCCAA a score=12546.000000 s hg15.chr22 15275482 94 + 49476972 GCTATTGTTCCCTCC--ATGAATGTTA----CTTTCACGTTTCCCCAGCAAAAGAAACCAACCAAAATCCTGGAGGAGCTATTCCTAGATGGAGAGAAGT s mm3.chr13 101050880 97 - 116242670 GCTGTGGCTTCCTCCTACTGGCTTTTAT---CTTATAAGTTTCTGCAATAAATTAAACCAACTAAAATTTTGGAACAGCTATTCCTAGGCAGTGGTAAAT s rn2.chr17 55862260 100 + 93540836 GCTGTGGCTTCCTCCTACTGGCTTTTATTTTCTTGTAAGTTTGTACACTAAATTAAACCAACTAGAATTTTGCAACAGCTGTTCTTAGGCATTGGTAAAT a score=95529.000000 s hg15.chr22 15278611 612 + 49476972 CCCTTCTCCCAAGCAGTTAGCGCTGAGAGTGTGGAGTGTGCTCTCCAGGATCAGCACATATGTATTATCTTGAAAAATACATTCCCCTGAAAAAAATCCCATGAAAAAAACTTAAAAAAAAAAAAAGGTTTCTGTTTTAACACCCGTCACCCCTGCAAAACACTTTACAAAAAAATCCTTGTCTTCACTACCAGAGAC-----ATTTTCCTTTTCTTCTTATATAAGATTACCCGGTGAGGCAGCCGAGAGTGACCCACCCGCCCCCTCGCAGCTCCGAAGCAGCTTCAAGAAGGAACA--GGATCCCGAGGCCTGGATG----CTGGACCCTACACCGCCACCCTCATCCCAGCCCGCTGCGGGCAGCAGTTCCTCGGCCGTGGAGTAGTTTTGGATTCCAGGTG-ATTTTGTCTCTCTGCGCTGGCCAAGGCT---------------------TCCGCCCCAGCCCTTACT---CTCCTTTCAC-GGAAAGGTCGCAGCCTGTGGCCCTACCGGCAGACAGGTGCAGAGGTGAG-CCCAGCG-TCCCAGCCATCCTCTGTCCTC------------------GCACCGC-ACGTGACCAGGCC--TGCT-----------------------GGCCAGTCTTCTCTATCCCGGGCTACAGGAACCACATCA-CCGGCGCTCCTTGGGAAACGC s mm3.chr15 67470608 631 - 104111694 CCCTTCTCCCCGGCGGTTAGTGCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCGGAACACACATTTATTATTAAAAAATCCA--------AAAAAAATC---TAAAAAATCCTTTGAAAAA---------------------ACCCA----------AAAAAAATTTACAAAAAAATCCGCGTCTCCCCCGCCGGAGACTTTTATTTTTTTTCTTCCTCTTTTATAAAATAACCCGGTGAAGCAGCCGAGACCGAcccgcccgcc----cgcggcccc---gcAGCTCCAAGCAGGAACCCCAGAGACCGAGGCCTTCCTGCCGCCCGGACCCAGCACCGCCAGCCTCGCTCC--CCCG------------GTTCCACGGCCGTTGAGTACGCGTCGATTCCGGTTGAATTTTGTCcctctgcgctcgcccccgctcccctccccccggctccgtcccccggccccgcactcgctctcctcctcTCACGGGAAAGGTCGCGGCCTGCGGCCCCGCGGGCAGCC--GTGCCGAGATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCTCTGTACGTGGGGGACCTGCACCCCGACGTGACCGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCTACGC s rn2.chr7 69457366 628 + 139049774 CCCTTCTCCCCGGCGGTTAGTGCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCGGAACACACATTTATTATTAAAAAATCCA--------AAAAAAATC---TAAAAAATCCTTTGAAAAA---------------------ACCCA----------AAAAAA-TTTACAAAAAA-TCCGCGTCTCCCCCGCCGGAGACTTTATTTTTTTTTCTTCCTCTTTTATAAAATAACCCGGTGAAGCAGCCGAGACCGAcccgcccgcc----cgcggcccc---gcAGCTCCAAGCAGGAACCC-AGAGACCGAGGCCTTCCTGCCGCCCGGACCCAGCACCGCCAGCCTCGCTCC--CCCG------------GTTCCACGGCCGTTGAGTACGCGTCGATTCCGGTTGAATTTTGTCcctctgcgctcgcccccgctcccctccccccggctccgtcccccggccccgcactcgctctcctcctcTCACGGGAAAGGTCGCGGCCTGCGGCCCCGCGGGCAGCC--GTGCCGAGATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCTCTGTACGTGGGGGACCTGCACCCCGACGTGACCGAGGCGATGCTCTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCTACGC a score=26437.000000 s hg15.chr22 15279223 185 + 49476972 -----------------------AGGATGTGGAATGTGCTTAAGACCCCATGAATTTTGATGTTATAAAAGACTAGCCAATACACACTAAGTGGTCTCGGTGTGATCCATCACTCCGCAAAAATGGAGTGGGCAACATGTTCATTAAAAAAATTGGACAAATCTATTGATTATAAAGCATTGCATGATACA---TCTGCTTCTGGTAACAt s mm3.chr3 59725137 178 + 160674399 GTATGTGAACTTCCCCCAGCAGGTGGACGCGGAACGTGCTTAAGACACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTATGCATCTCGTGG--------------------------------AGTAGGCAACATATTCATT-AAAAATTTGGACAAATCCATCGACAATAAAGCACTATATGATACGTTTTCTGCGTTTGGTAACAT s rn2.chr18 31222847 210 - 82509072 TTCCGTGAACTTTGAGCAGCCTGCTGATGCAGAGCGTGCTTTGGACACCATGAATTTTGATGTCATCAAGGGCAAGCCAGTCCGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAGGAGTGGAGTAGGCAACGTGTTCATT-AAAAATTTAAACAAGACCATTGACAATAAAGCGCTATATGATACATTCTCTGCTTTTGGCAATAT a score=286474.000000 s hg15.chr22 15279808 1948 + 49476972 -CTTTCACATTAGGTGCTCTGTGGTGAAAACGGTTTCAAAGGTGATGGCATTGTACATTTTGAGACACA-GAAGCAGCTGAAAGATCTATTCA-AAAATGAAATGGATGCTTCTAAATGATAGCAAA--GTCTGTTGGA----TTAAGTCTTGTAAACAATGAGAAGCAGAACT------CAGAGCTAAAAAGTTCACCAATGTTTACAGGAAGATTTTTGGAGAAGACATGGATGGTAGGTGCCTTAAAGATC-CTTTGGCAAGTTGGGATCTGTCTTAAGTGTGATAGTAGTGGTTAATGAAAGTGGAAAACCCAGAGGTTTTGGATTTGTCAGCTTTGAAAGGCATAAAGATGCGCA----------GATGAGATGAAC-AAAAGAAGCTCAATGGAAAGTAAATTGATGTTGGTCAAGCTCAGAAAGAA-GTAGAATGGCAGATGGAACTTGTGTGCAAATTTGAAAAGATCAAGCAGTATAGGATCATCAGATAACAAAGTGTTAACATTTATGCAAAAAATCT---TGATGGTAT---TGATGAATGTCTCTGGAAAGAACTTTCTCCACTTGGTACAATCACCAATGCAAAGGTTATGAAGGATGGTTGTCATAACAAAGGGTTTGATTTGTGTATGTTTCTCCTCTCCAGAGGAAGCAACTAAAGCACTTTCAGAAATGAATGGTAGAATTGTGGGCACTGAGCCATTGTATATATATAGTGTTAACTCCATGGGAAGAAAAGCAATGAAGAGCACCAGGCTCAGCTCATTAACCAGTACAGTATGTGCAAAGAATGGCAAGTGTAAAAACTATGCTCAACCTGGGAATCAGTCCCTATCAGCCAGCACCTTCTTCAATTGACTTCATGGCAGTTATCCCACAGAGTGAGAGCCATGCTGCAAAGTATTCTCCTAGCCAAACTGCTCAACTAAGATCAAATCCTCCCTAAATTGCTCAGGGTGCCAGACCTCATCCATTGAAAAATATGTCTA-------------AGCCACTCCTAGCTCACTACATTTAGTAGTAAGAGAACAGCTTCTTCACAGATTCCACAAGTCATGTCAACACAGC-TGTTG-TAACACATCGACACAGAAAATAGGAGCACATCCTGCAGTTGCCGCTATGGCTACTACAGATACTCCTGCTGTTTGTACCATTTCACAGTATAAATATGCTATGGAAGCTCACAATCCTCAATGGCATTTTCATGCACAGCCCCAGATTACCATGCAGCAGCCTACTGTTCATGTAGAAGGTCAAGAACCTTTGA---CTTCCATGATGGCATCTGCTCCTCCTCAAAAGCAAAAGGAAA---TGAGTGAATGGCTGTTTCCTCTTCTTCAAGCCATG--CCCTAGTCGTGCTGGTAAAATCATTGGCAAGTTGTTGCAGATTGGTAATTTAGAACTCCTTCATATGCTTGAATCTCCAGAGCCTCTCTATACTAAGGTTGACAAAGGTATAGCTGTACTACAAGACCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAATGGTGCCACTGGTGTTCCAATTGTTTAAAACTGATCAGGGACCAC-AGAAAGAAACTTGAGCATCACTGAAGAAAAATATC-TCAATATCAAAAACCTTAAATACTAT---GGAAAAAATTTGTAA--------------------------------------AGTATAAAAT-------------AAATTTAA----AAAGGAAACTTTGAACTTTACATACCAAGCAAATGTCAGATCTAACAAATGCAATGATAGTCCTAGATTACTTATTGATTTGAAAAGAAAAA-------ATCCTC---------CCAAAATAATAAAATATAAAAACACTGTAATG-CTTTTCAGACTCTGTGATAAATAATTTTCAGCAAAGTATAAAAATTTAAAGCA----TTCCTTTAATTTTGTAATTCATTAGTGTGGAATAGCTAAGAATGTCACTTCTGTTTTAAGTAACAGAATTGATAACTGAGCAAGGAAAGGTAATTTGGATTATAAAATT-TTGCTTTAATAAAAATTCCTTAAACAGTGAAAAAAA s mm3.chr3 59725315 2019 + 160674399 CCTTTCATGTAAAGTGGTTTGTGATGAAAATGGCTCCAAGGGCTACGGATTTGTTCATTTTGAAACACAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGGATGCTTCTAAATGACCGTAAAGTGTGTGTTGGACGATTTACATCTCAGAAGGAACGAGAAGCAGAACTTGGAGCCAGGGCAAAGGAGTTCACCAATGTTTACATCAAGAACTTCGGAGAAGACATGGATGATGAGCGCCTTAAGGAACTCTTTGGCAAGTTTGGGCCTGCCTTAAGTGTGAAAGTAATGACAGATGAAAG-GGAAAATACAAAGGATTTGGATTTGTAAGCTTTGAAAGGCATGAAGATGCGCAGAAAGCTGTTGATGAGATGAATGGAAAGGAAATCAATGGAAAACAGATTTATGTTGGTCGAGCTCAGAAAAAAAGTGGAACGGCAGATGGAACTTAAGCACAAATTTGAGCAGATGAAGCAAGATAGGATCACCAGATATCAGGGTGTGAACCTTTATGTGAAAAATCTTGATGACGGTGTTGATGATGAACATCTCCGGAAGGAGTTCTCTCCGTTTGGTACAATCACCAGTGCAAAAGTAATGATGGAGGGTGGGTACAGCAAAGGGTTTGGTTT-TGTATGTTTTTCATCCCCCGAAGAAGCCACTAAAGCAGTTACAGAGATGAATGGTAGAATTGTGGACACAAAGCCTCTG----TATGTAGCTTTAGCTC----------AACGCAAAGAAGAACGCCAGGCTCACCTCACTAAC-----CAGTATATGCAGAGCATGGCAAGTGTACGAGCTGTGCCCAACCCCGTGATCAACCCCTACCAACCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCATGCTACATACTATCCTCCTAGCCAAATTGCTCAACTAAGATCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAGAATATGTCTGGTGCTATCCGTCCAGCTACTCCTAGACCAC--CATTTAATACAATGAGACCAGCTTCCTCACAGGTTCCACGAGTCATGTCAACACAGCGTGTTGCTAACACATCAACACAGACAATGGGTACACGTCTTGCAGCAG------------CTGCAGCCACTCCTGCTGTCCGCACCATTCCCCAGTAAAAATACCCTGAGAGAGTCCGCCATCCCCAGCAACATCTTAATGCACAGCCACAAGTTACCATGCAACAGCCTGCTGTTCATATGCAAGGTCAAGAACCTTTAACTGCTTCCATGTTGGCATCTGCGTCCCAGCAAGAGCAGAAGCAAATGTTGGGGGAATAGCTGTTTCCTCTTATTCAAGCCGTGCACCCTTCTCTTGCTGGTAAA---------ATGCTGTTGGAGATTGATAACTCAGAATTACTTCACATGCTTGAGTCTCCAGAGTCTCTCCACTCAAAAGTTGATGAAGCTGTAGCTGTACTACGAGCCCACCAAGTGAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACTGGTGTCCCAACTGTCT-AAATTGATCAGGGACCAT-GAACAGAAACTCGTTCTTCACCGAAGAAAAATATCTTAAACATTGAAAAATTTAAATATTAT-----GAaaaaatagcaaaatataaaataaaaacataaagtataaataaatataaaaatataaaatataaataaatataaaataaaaaAGGAAAGGAAACTTTGAACCTTATGTACTGAGCAAATGCCAGGTCTAACAAA--CAGTGCTAGTCCTAGATTAC---TTGATTTAA-AACAACAACCACAAAAACCCC---------CAAAAATAGTAAAATATAAAAACAAATTAATG-TTTTATAGACCCTGGGA-AAAGAATTTTCAGCAAAGTACAAAAATGTAAAGCATTTCTTTCTTTAATTTTGTAATTCTTTACTGTGGAATAGCTTGGGACATCAGTTCTGTTTTAAGGAGCAGAACTGATGACTGAGCAAGGAAATGTAATTTGGATTATAAAATTCTTGCTTTAATAAAAATTCCTTAAACAGTATAAAAAA s rn2.chr18 31223057 1936 - 82509072 CCTTTCCTGCAAGGTGGTCTGCGATGAGAATGGCTCGAAGGGCCATGGATTTGTACATTTTGAGACAGAGGAGGCAGCGGAAAGAGCCATCGAGAAAATGAACGGGATGCTTCTGAATGACCGCAAAGTGTTTGTTGGACAGTTTAAGTCTCGGAAAGAACGAGAAGCAGAGCTTGGAACGAGGACCAAGGAGTTTACCAACGTTTACATCAAGAACTTTGGGGACCGCATGGATGATAAGACCCTGAATGGCCTCTTCGGCAGGTTTGGACAGGTCCTAAGTGTGAAAGTCATGACCGACGAAGGTGGAAAATCAAAAGGATTCGGGTTCGTCAGCTTTGAAAGGCACGAAGATGCGCAGAAAGCGGTGGATGAGATGAATGGGAAGGAACTCAATGGAAAACACATTTATGTGGGCCCAGCTCAGAAAAAG-GTGGACCGTCACATAGAACTTAAGCGCAAATTTGAGCAGGTGACCCAAGACAGGGGCATCAGATACCAGGGCATTAACCTTTATGTGAAAAATCTCGATGATGGTATTGATGATGAACGTCTTCAGAAAGAATTTTCTCCGTTTGGAACAATCACCAGTACAAAGGTTATGACAGAGGGTGGTCGCAGTAAAGGATTCGGTTT-TGTGTGTTTCTCCTCCCCAGAAGAAGCCACAAAAGCTGTTTCAGAAATGAATGGTAGAATTGTGGCCACGAAACCACTT----TATGTAGCTTTAGCCC----------AGCGCAAAGAAGAACGTCAGGCTCATCTCACTAAC-----CAATATATTCAAAGAATGGCAAGTGTCCGATCTGGGCCGAACTCTCTTATCAACGCTTACCAACCAGCACCTTCT---GGCTACTCCGTGGCTGCTGTCCCACAAACTCAGAACTGTGCCCCATGCTG---CCCTAGCCAAATTGTTCAACCAAGTCCAAGTACTCGCTGGACTGCTCAGGGGGCCCGGCCTCATCCATTCCCCAACGTGTCTGGTGCTAGCCACCCTGCTGCTCCTAAATCGT--CGTTTACTACGGTAAGACCAAGTTCTTCACATGTTCCTCAAGTCATGGCAGCACAGCGCATCACTAACACATCAGCACAGACAACGGGTCAACGTCCTGCCCTAGCCTCT---TCACCTGCAACTACTC---CTGTTCGCTCGATTCCACAGTATAAGTATGCCACAGGAGTCCGGAACTCCCAGCAACATCTTAATGCCCAGCTG---------GTGCAACAGCCTTCTGTTTGCATACAGGGCCAGGAACCTTGGACTGCTTCCACATTAGGAACTGCTCCT---CAAGAGCAAAAGCAAATGTTGGGTGAAAGGTTATTTCCTCTCATTCAAGCCATGCACCCGACCCTGGCTGGTAAGATCACGGGCATGTTGCTGGAGATTGATAACTCGGAACCACTTCATATGCTCGACTCTCCAGAGTCTCTGTGTTCTAGAGCTCAGGAAGCCGTGTCGGCACTCCAGGCCCACCAAGCTAACGAGGCTGCCCAGAAAGCTGCTGGCAGTACCTCTGGTGTCCCAACTGTTT-AAACTGACCAGAGACCTCAAAAAAGAAACTCACACTTTGCAGAAGAAAGATATC-TAAACATTGAAA-----AAACattatttttaaaaaaaatagtaaaatataaaat---------------------------------------------------aaataaaaaaGGAAAGGAAACTTTGAACTATACGTACTGAGCAAATGTCAGGTCTGGTA--------TCTAAGCCTAG----C---CTGACTTAAGAACAGCAAGC-----AACCCCCACCCCCGACAGAAATAGTAGAACCT----ACAAACCACTGTTTTTGTAGACCCCAAGA-AAAGCATTTTCAGCAAAGTAGAAACATTTAGAGCA----TCCTTTTAATTTTATAATTCTTTATTGTTGAATAGCTCAAAA---------TGTTCTAA-TAGCAGAATTGATAACTGAGCAAGGAAACATAATGTGAATTATAAAATT----CTTTAATAAAAA---CTTATGCAGTGAAAAAAA a score=963.000000 s hg15.chr22 15281756 30 + 49476972 TAGGCAAAGATACAAAAAAAATTTATAAGA s mm3.chr3 59727334 29 + 160674399 -AGAAAAAAAAAGAaaagaaatacaggaga a score=2018.000000 s hg15.chr22 15281786 24 + 49476972 AGCAACAATCTTGTATTTATTTGt s mm3.chr11 12840500 20 - 122862689 ----CCAACCTCCTTGGTATTTAT s rn2.chr10 12493873 20 - 106208427 ----CCGACCTCCTTGGTATTTAC a score=6014.000000 s hg15.chr22 15282141 182 + 49476972 TTATTTGTTTAAATACTATAAACACTAATATCATACACATGGTTAACTGGTTGtaatttt-taaattatattaataaatttttataaa--------aactttttataaataaaaact---tataatttcaaataaataaCAACATCTGCCACACTACCTTAAAATGGC---GACTATTTCAGTATAATAAACATATA s mm3.chr17 5494837 152 + 93529596 TTTTTCTTTTTTATATTAT----------------------TTTAACTACATGTAATTTTGTGTAatatatgtatatatatatatataACACATGTAGCCATATATAAACATAGTAT--------------------AAAAATATATGTCACTATA---TGaaataattatatttatttatttatattaattatata s rn2.chr1 36598896 142 + 276301343 TTATTCCTGTTTATATTAT----------------------TTTAACTACATGCAATTTTGTGTATTATATTT----------------CACATGTAGCTATATATAAATATAATATTCCTTTTACGTTACATGGGGaataatatttatcactataa--tgaaataat---------------atattaattatata a score=9503.000000 s hg15.chr22 15282347 147 + 49476972 ATAAATAAAGAATAAAAAGA-ATAGGTACAACAATTTTCCTCCTAATCAAAAACACAGTTCCTCATTTTGAAAATTATTTCTTATCTCTCTTTTATTAAAATAAACTTTCTACTTTGAAATCTAATACTCTTGTGAATGTAAAATAAT s mm3.chrX 50429000 108 - 149996094 ATAGGCAAAGAATAAAAACACATAGG-----------------------AAGACA-------TTATTTTGAAAATTATGTTTCATTTTTTTCTGACTTAAGCAAA--------TCTGAAAGGAAAGAATACCAC--ATGTAAAATAAT s rn2.chrX 83620108 105 + 133900917 ATAGGCATAGAATAAAAACA--TTGG-----------------------AAGATA-------TTATTTTGAAAATTATGTTTCATTTTTTCC-AACTTAGGCTAA--------TCAGAAAGGAAAGAACACCAC--ATATAAAATAAT a score=5746.000000 s hg15.chr22 15282950 29 + 49476972 TGGAGTCTGTACTTTGTTGTAAAACTATA s mm3.chr17 5496457 29 + 93529596 TGCAGTCTATATTTTGTTATAAAACTATA s rn2.chr1 36600461 29 + 276301343 TGCAGTCTGTATTTCATTATACAACTGTA a score=10917.000000 s hg15.chr22 15283894 77 + 49476972 ATTCAAAG----TTTTTCTTTCTGCCATTAAGTTTGTTTAATTTTATATTAAGCTCAGTTTGTATTATGATATCAAATTCA s mm3.chr3 24655586 77 - 160674399 ATTCAAGGGAATTTTTTCTTTCT--CTTTAGGTTCATGTAGTTT--TACTATGCTTACTTTGTATTACAATATAGAATTCA s rn2.chr2 222433219 77 + 246339213 ATTCAAGGGATTTCTTTCTTTCT--CTTTCGATTCATTTAGTTT--TATAATGCTTACTTTGTATTACAACACAGAGTTCA a score=84196.000000 s hg15.chr22 15283976 684 + 49476972 AGGGATTACTTTAAACTTTCCTAGGGTATTTGCAGATTTAATTTGTTCTTACAGTATGTAAATACCA-----AGAGAGCATTCCatttaatatta---tttttattaaa-ttaaCTTTGGAGTAAAAAGTCCAAGAAAAGCCCTGTACTGAAATCACATGTTTACTAAATCCTGGATTTTCTGTACAGTCCCTACATATTTCTACTTTAAA--------ATTCTTCTGTCTTGTGAAATAATTCATTAAAAGCAGCAGGCAGATGATGACAGGTAAACTTTTTAATGAT----GTTCTAATGTTGA-----CAATTGCAGTTTTATTTTGCTTGGATCATAATGGCGTGTAAGCAGTTTAGGCCCCAGAATGCCCATAAGTAGAGCTCCATTTGGAGCTGTGATCAAGATGGCTAAAAATGCTACTGTCATCACATCCTTCACATATGGTTCCAAGTGGGGTGCGGAGACTCTTGCTGTTTCTAGAGCCAGAGGACCTAACACAGCCTACATTTAGGGGTAAAAATGGGGCATAAAGAAAAATATTAAACTGAGTTAATATATAAT----GTAAATGGCTCTGTCAAAATA---------AACAAAATCTAGTACTAGACTATTAGAAAAAAAAGTACTCAG--TAATTTTCATAAGTTACTCATCAGTTCCATGTTCTTCCTAGCAGATATATGTGGAGGA------------AGAGTACAATAGTGACAAATCAG s mm3.chr3 24655673 686 - 160674399 AAAGACCACCTTGCATTTTTCTAGGGTATTTACTGACTGACTTGATTCTTGAACTATGCAGGTATTAGACTGAAGGACCACTGCAGTTG--ACTGCAGTTTTTATTAAAATTTACTCTGAACCAAGAA-CCAGAGGAAAGCCCAGTAGAGAAATTGTG--TTTAGCGAATCCTGGTTTTTACAAACAATCTTTAAACTTCTGTACTGTAAC---TTTTTTTTTTTTGGTCAGGTGAGATAAATCATGAGACATAGCAGG----TGATGAT-GGCAAGCTTTTTAATGATGGAAGTTCGAGAGCTCAACTTTCAAAGGGAATGTCACCTCACTCTGTTC------------AAGGATTTTGGGTCCCAGTATGCCGATGAGGAGGGCTCCATTTGGAGCTGTAATCAGGATGGCTAGGAAGGCCACTGTCATCACAGCCTTCGCGTATCCTTCCAAGTGGGGTGCCATGACCCTTGCTGTTTCTAGAGCCAGAGGTCCTAAGACAGCCTGCAGTTGGGGATGATACAGGG-------GAAAAATGTTGCTCAGAGTCAACACTTGATAAAAGTAGATGGCTGTT-----ATAGATGCACACAATGAAACTGAGTGATAAAGTACTGGAAGGAAAAAAACC-AGGGTAATTTGTATCATTTAGTCATTAATTGTGTATTCTTCCTAGCAAATCTATCTGGAAG-------------AAATCAGAATAGGGGAGAAGCAG s rn2.chr2 222433500 697 + 246339213 aaaGATCACCTTGCATTTTTCTAGGGCATTTGCTGACGAACTTTATTCTTGAAATTTTCAGTTACTAAACTGAAGGAGCAGTGTAGTTA--ACTA---TTTTTATTAAA-TTCACTTTGAACCG--------GAGGAAAGCCTTGCAGAGAAATTGTGCATTTAGTGAATCCTGGGTTTTATGAACAGTCTTTAAACTTTTGTACTGTGATGGTTTTTTTTTTTCCCGTCATGTGAGATAATTCATTAGACAAAGCAGG----TGGTAAT-AGCAAACTTTT-AATTATGAAAGTTTGAAAGCTCCACTTTTAAAGGGAATGTCTCCTCACTATGATC------------AAGTACTTTGGGTCCCAGTATGCCAATGATGAGGGCTCCATTTGGAGCTGTAATCAGGATTGCTAGAAAGGCCACTGTCATCACATTCCTTGAATATCCTTCCAAGTGGGGTGCCATGACCCTTGCTGTTTCTAGAGCTAGAGGGCCCAAGACAGCCTGCAGTTAGGGAGGACACAGGG-------GGAAAATGTTACTCAGAGTTAACATTTAATAAAAGCAAATGGCTGTTAT-AAATAAATGCACATAATGAAACTGAGTGATAAAGTTCTGGAAAGAAGAAAACCAAGGATGATTTGTATCATTTAATCACTAATTGTATTTTCTTCCTAGCAAATATATTTAGAGGAAAGCAACTTGACAAATCAGACTAGGGACAAAGAGG a score=4114.000000 s hg15.chr22 15285295 45 + 49476972 CTTGTGTTTAATAACTAGGCATGAAATTGCCTTAAAATTTGGGGG s mm3.chr18 40465922 45 - 91041441 CCTATGATTGGTATATAAATATGAAATTTCATTAAGATATAAAGG s rn2.chr18 40783887 43 + 82509072 CTTATAATTGGTATATAAATATAAATTTT--TTCAGATTTAAGAC a score=5848.000000 s hg15.chr22 15285340 46 + 49476972 AATTAAATACCAATATGTAACATATTTTCTATGGAGTTGCAAAGTG s mm3.chr18 40465967 46 - 91041441 AAATAAATACTAACATGTACTATATTCATTATATATTTTTCAAGTG s rn2.chr18 40784029 44 + 82509072 aaaTAAATATTAGCATATACTATATTCATTATAT--TTATCAAATG a score=3850.000000 s hg15.chr22 15286134 20 + 49476972 TGACTCTACTTGtataaata s mm3.chr3 24656411 20 - 160674399 TGCCTCTACTTGTGTAAAAA s rn2.chr2 222434247 20 + 246339213 TGCCTCCACTTGAATAAAAA a score=60992.000000 s hg15.chr22 15286154 780 + 49476972 attaattttttatGTCTTGCCAGTTCCTGGAACCAGCTTGATATTCTTTGTGTAGAAGCTAGCCTGGA-GCCAGCAGACATGAATAGGCAGAAGCAGAAT---AATACTGCAGGACTCGAGTGAGT-----------GGTCTCTTTCCTCATACCTGCTTTTCTTTTTTC---CCTGCTTTATGAAAATTATGAAATAATGAAACAAAATTGCAAGAGTATTGTTGGAAGGAGAGAGAACAGATA-------------------AGCCTTTTGTAGATTTATTATTCCCTACAGTAGatattaaaaataaaaagttattatttatattaCTTGAAGG---TAAGATAAAATAAC---AACATTGTTTGttaactgagcaccaccatatgccagagagagtgctaagcactttaagtggattatctcattgaatcctgacaacactgctaagaaacagatacagtcatagacttcattgtaagatgagaacactgaaggactgagagactagaaaata---attttcctgaggttat----aggcaagtaacatggtattcaaaacaggtagtctggccctaagaacctgcttttCTAACATGATAATAGGGGTTTTTTTGCATGAAAATTTAGGAGCTTCTGTTTTGGAATAACAA-----CTAAG--AAAAGAGCCACAGGAAATTAAGGTATATTATGCTGCCAAGTTAAACAGTCTAACAAGAAGTAGCAATATATTTTAGTAGGAGGAGAATATCCTTGAATAACAGGGCAAAATTACAAGGTTTCCCTTTCCGTTCATTCATCCTTGCAGGCATGCAATACGTATTTgcctc s mm3.chr3 24656501 780 - 160674399 ATTGATACATTG-GTTTTTCCAGTTCTTAAAATTTGCACA---------GAGTACAATGTAGGCCAGATGCCAGGAAGAGGGGACAAGGAGAAGCAGAGTAAACAAGCTGCAAACTGGGGGTGGGGTGGGGTAGGGAGAGGCTCTTCTGCACAACTGCTTGCTTCTCACTCTGCCTGCTTTAGGAAA-TGACG-AATAATG-TGCAAACCCACCAT-GTATCACTGGAAGTGGGTGTAACAGACAGACAGAGAGGCA-------TTCTCTTTATAGACCTAGTGTTTCCTAGAAT--------AAAGCAGGTTATTACTGTT--TATGACTTAAAGG---TAAGATAAAGTAACTATAATATTGCTCGTG----GATCAGCactatatgacagaaattatgctgagagttttacaggaattctttcacccactccc-accacaccaccttttagtaaatatggtcctaggcccttatataaaatgagcaaatcaatgagctgagagatgaaggagta---acc------agctaatgaccgagcacgcaacagagcattcaacacca--agtctggcctTAATGCCTTCAGTTCTAATCCTAATCATTTTGGGTTT----CACAGAAATGTACAAGCTTCAATTTTGTAACAGCAAAATGGAGAAGAAAAAAAAATCCCAGGAAAGCAAGG--TCTTAAGCTGCTATGTT-AACAGTTGAACAATAAGTAACAATACCGCTTTATATTAGGAAATTATTGCAGAATTGGATGACAAAACTACAGTCTTCATTAATTCAGTCATTTGTTTGTGTAGGCATGCAGACCACGGTAACCTC s rn2.chr2 222434339 745 + 246339213 ATTG----ATTA-GCTTTTCCAGTTCTTAACATTTGCACA---------GAATACAACTTCGCCTGGATGCTAG--AGAAGGGACAAGTAGAGG---------CAAGCGACAAGCTTGGGGAGGAA----------------TTCTCTGCATGACTGCTTGTATCTCAC----CCTGCTGGAGGAGATTGATG-ACTAATA-CACATAACCACAGT-GTATCACGGGAAGCAGGTGTAacagacagacagacagacagacagacTTCTTTTTATAGATCTATTGTTCCATAGAAT-------AAAAGCAGGTTATTACTGTTTATATGGCTTGAAGGTAATAAGATAAAGTAACTATAATATT-TTCGTA--ttattcagtactatatgccagaaattatgctcagagttttacaggaattatttcactcactccc-acaataccgcctttcagtaaatatggtcacagaccctgatagaaaatgagcaaatcaaggagctgagagatgaaggagtactgacc------agctaatgaccaagcaggcaacagagcattcaacacca--agtctggccgTAAAGCTGTGAGTTCTAACCCTAATCATTTCGTTTT--------------------GTTTCTATTTTGCAACTGCAAAATGGAGAAG--AAAAAAATACCAGAAAAACAAGG--TCTCATGCTGCCATGTT-AATAGTTGAACAATAGGTAACAATGCCTCCTAAGGGTAGCAAATTGTTACAGAATTGGATGATAAAACTAGGGTCTTCATTACTTCAATCACTTGTTTGTGTAGGCAGGCAGGGCATACCGACCTC a score=15124.000000 s hg15.chr22 15286934 231 + 49476972 ttg----catgtcaggcactgtgttaagtgccagggagaaataatgaa--aaacaactgcaacaacc-----agacactgtccctgtccttacatagcctatcaagggggcgggggcagGGATTTAGCCATTAACCAAATAGTATACAAATAAATGTGTAATAAAAAAATATATGTGCATTTGTGTGATGGAGTGAGTGGCAAGGTAGGAAAAG-TATTTTTTAAAAAATCAATGTGTCTCTA s mm3.chr3 24657657 194 - 160674399 CTT----TTTATCAGGTATGATGACAAGCAGTAGGG-GAAATGAAAAAGGAAACAAGTAAAATGACCCCCAAAAACAC--TCTCTGTCCTT------CCTG--------GCAGTGACAG---------------TTATGTAACATAAAAAC-------------AAATATCTGCATGTGCTTGTGTGCTGGAGGGAGTGTCAGGATGTGCAAAGATGTACTTACGAAAACCAGTGTGTCTCCA s rn2.chr2 222435542 191 + 246339213 CTTTCTCTCTATCAGGTATGATCCCAAGCAGTAGGG-GAAATGAAAAAGGAGACAAATAACAT--TCTCCCAAAACA----CTCTGTCCTT------CCTGT-------ACAGTGACAG---------------TCACGTAGCACAAAAAC-------------GACCATCTGTATGCGCTTGTGTGGTGGAGGGAGTGTCAGGGTGAGGAAAG----ACTTACAAAAACCAATGTGTCTCCA a score=6736.000000 s hg15.chr22 15287485 65 + 49476972 AAATCATAACATTTAGCTTTGTTATATTCAGCAAAATATAA-AAACTCCAATTTTCAGATATATTC s mm3.chr3 24657851 65 - 160674399 GAGTCATAACACTTACCTCTGTAGCAGCCAGtaaaataaaa-aatcatatattatgatatatactt s rn2.chr2 222435733 66 + 246339213 AGGTCACAGCATTTACCTCTGCAGCCGCGAGCAAAATAAAGTAGTCGCATATTATGATGTAGACTT a score=14435.000000 s hg15.chr22 15287550 123 + 49476972 TTATTATATATTTTAGGAAAAT----AAAAAACATATTTTCATAAACTTAGGAAG----TACTTATTGAAAGAATGCTTTTTGATTTCAAAATAATTGCTTTTAAAACTGAGATTTCAAAAGGT---------------------------------TACATTg s mm3.chr3 24658080 149 - 160674399 TTATTTTATACTTTAGGGAAGTAGAAAAAGAAAGCATTTTCATAAAATTTAGAGA----TTGTTATT-------TTCTTCTCAATTTCAGAGTAATTGC-TTTAAAATAAACCTTTTAAAATTTTGTATTAAgtgtgcatgtgtgtacatgtgt---tacatgt s rn2.chr2 222435950 156 + 246339213 TTATTTTATACTTTAGGGAAGTAGAAAAAGAAAACATTTTCATAAAATTTAGAGATCACTTGTCATT-------TTCTTCTAAATTTCGGAGAAATTGC-TTTAAAATAAACGCTTTTAAATGTTGCATTAAGTATGCATGTGTGTACACatgtgtgcacctgt a score=53994.000000 s hg15.chr22 15288498 420 + 49476972 ATCAAACATTTAAAAAGTAAGGA-TAATAGCTCATATTTTGTGATTGGAGTAACATTTTTCATTTTAAATTTTAAAAGC--ATCAAAACGAAAGCATTAAGCAATAGGCTTAATATGTTCTTACCTGTACTGTAGCTTTGGGCATCCATGCTAAAGCAATAAATATTTTCTCCTTAAAACTAAAACCAGCAAAGCACATCAATAGATATGTGGTTAAAATTCGAACACATAATGCCAAACTCAGAGTAGCAACAGATATGCCTAC----------AACAGATGAAAACAAACATAAATAACAAA---ATATTTG---TGAAGAAGTGTTCTTTATGCCCAGGAATATGTTTTCTAAAACTTTTGAAAGCATTTTAAGGCTATTGTCTCTTCATGTGTTTAATTTTTACAT-AAAACAATGATAATAA-------AAAATGAATATGA s mm3.chr3 24658649 418 - 160674399 ACCAAACATGACAAAAGTTAGGTAAATTAGAGGATAATTTGTGATTTGAGAAATATTTTTCATTTAGAACTTTAAAAACTTGTCAAAACTAAA--ATTATTATAATGACTTTTA-TGTTCCTACCTGGACTGTAGCTTTAGGGATCCATGATAAAGCAATAAATACTTTCTCCTTAAAACGGAAGTTAGCAAAAGACATCAGTACAAAAGTGGATAAAATTCGAACAGATAGTGCCAAACCCAAGGTAGCAAGGCACATGCCTAT----------AACACATATAAACAAATGTAAAAAACAAAGCTATTTTTGCAATGAGAGAGGAATTTC------------TCTGAATTCTAAAATTTCTGAAAATATTTTGAGGCTGTTGCTTCattatatct---atttttaatt-aaaatagtaattataaCGAGTATAAAACAAAGATGA s rn2.chr2 222436529 417 + 246339213 ATCAAACATGACAGAAGATAGGT-AATTAGATGATAATGTGTGGCTCAAGAAATATTTTTCATTTAGAACTTTTAAAACTCGTCAAAACTGAA--ATTATTATAAGGACTTAGAGGGTTCCTACCTGGACTGTAGCTTTAGGGATCCATGATAAAGCAATAAATACTTTCTCCATAAAACGAAAGTTAGCAAAAGACATCAGCACGAAAGTGGCTAAGATTCGAACAAGCAGTGCCAAACACAGGGTAGCAATGCACATGCCTAGaacacacataaacacacataaacacaTGTAAAAAACAAAGCTGGTTTTGC--CGAGAGAG----------------------GAGTCCTAAAACTTCTGAAAATATGTTCAGGCTCTTGCTTCTTTCCATCT---AGTTTTAGTTAAAAACAGTAACTATAAAAAGTCTAAAGTAAGAACGG a score=4004.000000 s hg15.chr22 15288918 136 + 49476972 TGGAGGATTCTCTGTAAAGTGCAAGACAGTATCTGATGGTGGAGGTACCATGAAAAATAAGACAGATGAC